Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 3.6e-94 348.2 170 100.0
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 1.6e-86 322.8 162 95.1
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 6.3e-83 310.8 171 88.9
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 8.2e-83 310.5 170 87.6
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 9.1e-82 307.0 176 86.4
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 2.0e-81 305.8 175 86.3
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 2.6e-81 305.4 175 85.1
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 2.6e-81 305.4 176 84.7
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 4.5e-81 304.7 172 85.5
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 4.5e-81 304.7 177 85.3
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 5.9e-81 304.3 177 84.7
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 5.9e-81 304.3 176 84.1
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 7.7e-81 303.9 172 85.5
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 1.3e-80 303.1 176 85.2
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.3e-80 303.1 177 85.3
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 1.7e-80 302.8 174 84.5
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 2.2e-80 302.4 177 84.2
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 2.9e-80 302.0 176 85.2
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 3.8e-80 301.6 174 83.9
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 3.8e-80 301.6 172 85.5
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 3.8e-80 301.6 173 84.4
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 5.0e-80 301.2 177 83.1
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 1.1e-79 300.1 173 85.0
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.1e-79 300.1 176 83.5
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 1.1e-79 300.1 176 83.5
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 1.1e-79 300.1 176 83.5
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 1.5e-79 299.7 166 88.0
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 2.5e-79 298.9 176 83.0
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 3.2e-79 298.5 174 83.3
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 1.2e-78 296.6 173 84.4
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.2e-78 296.6 176 83.0
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 1.2e-78 296.6 173 83.8
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 1.6e-78 296.2 177 82.5
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 1.6e-78 296.2 176 83.0
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.6e-78 296.2 176 82.4
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 2.1e-78 295.8 174 82.8
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 2.1e-78 295.8 173 85.0
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 2.1e-78 295.8 177 82.5
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.7e-78 295.4 176 82.4
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 2.7e-78 295.4 176 83.0
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.6e-78 295.0 173 84.4
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.6e-78 295.0 173 84.4
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 4.7e-78 294.7 177 82.5
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 1.0e-77 293.5 164 86.6
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.0e-77 293.5 174 81.6
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 1.0e-77 293.5 175 82.3
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 1.4e-77 293.1 175 82.3
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 1.4e-77 293.1 172 83.7
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 1.8e-77 292.7 176 79.5
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.8e-77 292.7 176 81.8
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 1.8e-77 292.7 177 81.4
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 2.3e-77 292.4 176 81.8
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 4.0e-77 291.6 173 82.7
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 4.0e-77 291.6 179 79.9
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 5.2e-77 291.2 167 85.6
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 5.2e-77 291.2 174 81.0
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 6.7e-77 290.8 170 84.1
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 6.7e-77 290.8 179 79.3
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 8.8e-77 290.4 173 83.2
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.1e-76 290.0 173 81.5
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 2.0e-76 289.3 172 82.0
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 3.3e-76 288.5 177 80.2
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 9.7e-76 287.0 167 82.0
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 9.7e-76 287.0 167 82.6
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 9.7e-76 287.0 178 78.7
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 1.7e-75 286.2 167 82.6
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 1.7e-75 286.2 167 82.6
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 1.7e-75 286.2 167 82.6
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 2.2e-75 285.8 176 79.0
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 2.2e-75 285.8 177 78.5
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.8e-75 285.4 170 83.5
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 3.7e-75 285.0 167 82.0
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.7e-75 285.0 175 78.9
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 6.3e-75 284.3 175 78.9
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 6.3e-75 284.3 175 78.9
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 6.3e-75 284.3 175 78.9
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 1.1e-74 283.5 166 84.9
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 1.4e-74 283.1 181 78.5
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 3.1e-74 282.0 176 78.4
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 9.1e-74 280.4 166 83.7
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 1.6e-73 279.6 174 78.7
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 3.5e-73 278.5 162 84.0
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 3.5e-73 278.5 174 78.2
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 3.5e-73 278.5 178 78.1
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 7.7e-73 277.3 162 83.3
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 1.0e-72 276.9 167 80.8
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 2.9e-72 275.4 170 78.2
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 2.9e-72 275.4 174 79.9
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 2.9e-72 275.4 172 79.7
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 2.9e-72 275.4 175 76.6
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 5.0e-72 274.6 161 83.2
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 6.5e-72 274.2 173 76.9
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 8.5e-72 273.9 176 75.6
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 1.1e-71 273.5 225 64.9
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 1.9e-71 272.7 166 79.5
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 1.9e-71 272.7 178 74.7
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.9e-71 272.7 171 77.2
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 1.9e-71 272.7 177 76.3
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 3.2e-71 271.9 164 80.5
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 3.2e-71 271.9 168 79.2
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 4.2e-71 271.6 177 78.0
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 1.6e-70 269.6 177 74.6
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 2.1e-70 269.2 176 73.9
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 2.7e-70 268.9 160 80.6
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.7e-70 268.9 167 78.4
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 3.6e-70 268.5 167 78.4
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.7e-70 268.1 167 77.8
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 4.7e-70 268.1 176 73.3
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 8.0e-70 267.3 176 73.9
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 8.0e-70 267.3 168 77.4
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 8.0e-70 267.3 170 75.3
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.0e-69 266.9 174 73.6
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 1.8e-69 266.2 175 73.7
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.8e-69 266.2 154 85.1
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 2.3e-69 265.8 166 78.9
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 5.2e-69 264.6 166 78.9
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 5.2e-69 264.6 178 73.6
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 2.0e-68 262.7 178 73.6
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 4.4e-68 261.5 168 75.6
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 7.5e-68 260.8 178 71.9
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 2.2e-67 259.2 176 70.5
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 2.2e-67 259.2 172 72.1
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 6.3e-67 257.7 171 73.7
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.8e-66 256.1 172 71.5
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 3.1e-66 255.4 175 74.3
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 4.1e-66 255.0 165 73.3
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.6e-65 253.1 156 78.8
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 2.0e-65 252.7 167 74.9
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 2.7e-65 252.3 177 68.4
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 7.7e-65 250.8 169 69.2
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 3.8e-64 248.4 158 77.2
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 6.5e-64 247.7 157 77.1
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.1e-62 242.7 173 65.9
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 1.7e-59 233.0 164 67.7
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 2.2e-59 232.6 164 67.7
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 8.0e-54 214.2 121 86.0
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 3.0e-53 212.2 136 78.7
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.2e-52 210.3 117 85.5
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 8.3e-51 204.1 123 82.1
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 8.3e-51 204.1 123 82.1
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 8.3e-51 204.1 124 81.5
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 3.0e-48 195.7 112 83.9
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 2.1e-46 189.5 191 49.2
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.5e-44 183.3 115 79.1
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 7.8e-41 171.0 165 50.3
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.6e-39 164.9 96 81.2
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 9.5e-39 164.1 103 76.7
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.7e-38 161.8 100 78.0
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 4.0e-37 158.7 86 82.6
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 3.6e-30 135.6 95 71.6
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 4.6e-25 118.6 102 59.8
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 1.5e-23 113.6 59 84.7
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 1.5e-23 113.6 160 39.4
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 6.2e-22 108.2 115 54.8
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.0e-20 103.2 126 46.0
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.4e-20 102.4 136 41.2
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 5.8e-20 101.7 156 37.2
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 9.9e-20 100.9 54 87.0
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 9.3e-18 94.4 52 86.5
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 7.8e-17 91.3 95 47.4
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 6.6e-16 88.2 48 85.4
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 5.6e-15 85.1 50 82.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 4.2e-10 68.9 63 60.3
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 2.5e-07 59.7 66 51.5
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 2.8e-06 56.2 35 71.4


User provided reference genes

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