Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G026400 Populus trichocarpa HOM05D006416 ORTHO05D008054 6.2e-155 550.8 293 100.0
Potri.005G038700 Populus trichocarpa HOM05D006416 ORTHO05D008054 1.8e-141 506.1 293 91.1
Sabra05G0037800 Salix brachista HOM05D006416 ORTHO05D008054 3.1e-138 495.4 293 89.1
QL03p004338 Quercus lobata HOM05D006416 ORTHO05D008054 2.9e-128 462.2 296 83.8
Manes.09G163500 Manihot esculenta HOM05D006416 ORTHO05D008054 4.2e-127 458.4 297 82.8
Duzib128G1696 Durio zibethinus HOM05D006416 ORTHO05D008054 9.4e-127 457.2 297 82.2
Gohir.A11G262900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 3.0e-125 452.2 297 81.5
Gohir.D11G272900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 2.0e-124 449.5 297 81.1
Thecc.05G308500 Theobroma cacao HOM05D006416 ORTHO05D008054 3.3e-124 448.7 297 80.1
Gorai.007G294200 Gossypium raimondii HOM05D006416 ORTHO05D008054 7.4e-124 447.6 297 80.8
Prupe.6G330400 Prunus persica HOM05D006416 ORTHO05D008054 3.7e-123 445.3 297 80.5
GSVIVG01000004001 Vitis vinifera HOM05D006416 ORTHO05D008054 1.1e-122 443.7 297 79.5
Ah.06g190130 Amaranthus hybridus HOM05D006416 ORTHO05D008054 1.8e-122 443.0 298 80.5
Duzib177G0710 Durio zibethinus HOM05D006416 ORTHO05D008054 3.1e-122 442.2 297 79.8
CiPaw.08G166800 Carya illinoinensis HOM05D006416 ORTHO05D008054 7.0e-122 441.0 297 79.1
TWI12G1406 Tripterygium wilfordii HOM05D006416 ORTHO05D008054 7.0e-122 441.0 294 79.6
Actinidia23608 Actinidia chinensis HOM05D006416 ORTHO05D008054 1.2e-121 440.3 297 79.5
Ciclev10002001m.g Citrus clementina HOM05D006416 ORTHO05D008054 1.5e-121 439.9 301 79.7
Glyma.10G157100 Glycine max HOM05D006416 ORTHO05D008054 1.5e-121 439.9 295 79.3
Glyma.20G231600 Glycine max HOM05D006416 ORTHO05D008054 3.5e-121 438.7 295 79.3
EL10Ac4g09303 Beta vulgaris HOM05D006416 ORTHO05D008054 1.7e-120 436.4 298 77.9
Atru.chr2.491 Acer truncatum HOM05D006416 ORTHO05D008054 2.9e-120 435.6 302 79.8
Rhsim07G0179600 Rhododendron simsii HOM05D006416 ORTHO05D008054 2.9e-120 435.6 297 79.1
MD04G1209400 Malus domestica HOM05D006416 ORTHO05D008054 3.8e-120 435.3 297 78.8
CANSAT54G1414 Cannabis sativa HOM05D006416 ORTHO05D008054 5.0e-120 434.9 299 80.3
FAN05G2936 Fragaria x ananassa HOM05D006416 ORTHO05D008054 6.5e-120 434.5 298 78.5
Haze_04238 Corylus avellana HOM05D006416 ORTHO05D008054 8.5e-120 434.1 294 79.6
FAN02G3793 Fragaria x ananassa HOM05D006416 ORTHO05D008054 8.5e-120 434.1 298 78.5
Cpa.g.sc48.9 Carica papaya HOM05D006416 ORTHO05D008054 1.1e-119 433.7 300 79.0
FvH4_6g05320 Fragaria vesca HOM05D006416 ORTHO05D008054 1.1e-119 433.7 298 78.2
FAN09G2836 Fragaria x ananassa HOM05D006416 ORTHO05D008054 1.1e-119 433.7 298 78.5
RcHm_v2.0_Chr3g0454061 Rosa chinensis HOM05D006416 ORTHO05D008054 1.4e-119 433.3 298 79.2
MELO3C004307.2 Cucumis melo HOM05D006416 ORTHO05D008054 2.5e-119 432.6 298 78.2
FAN14G2526 Fragaria x ananassa HOM05D006416 ORTHO05D008054 2.5e-119 432.6 298 78.5
FAN05G0060 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.2e-119 432.2 298 78.2
FAN14G3791 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.2e-119 432.2 298 77.9
Cfa006543 Carpinus fangiana HOM05D006416 ORTHO05D008054 5.5e-119 431.4 299 78.3
MD12G1224000 Malus domestica HOM05D006416 ORTHO05D008054 5.5e-119 431.4 297 77.8
COL.COLO4_13518 Corchorus olitorius HOM05D006416 ORTHO05D008054 2.7e-118 429.1 299 76.6
Phvul.007G182400 Phaseolus vulgaris HOM05D006416 ORTHO05D008054 3.6e-118 428.7 294 78.6
ClCG02G016070 Citrullus lanatus HOM05D006416 ORTHO05D008054 1.4e-117 426.8 299 77.3
Nn4g26146 Nelumbo nucifera HOM05D006416 ORTHO05D008054 3.9e-117 425.2 297 77.8
Nn1g02093 Nelumbo nucifera HOM05D006416 ORTHO05D008054 1.5e-116 423.3 305 76.1
Ca_10088_v3 Cicer arietinum L. HOM05D006416 ORTHO05D008054 2.0e-116 422.9 298 76.5
arahy.Tifrunner.gnm1.ann1.ICF70N Arachis hypogaea HOM05D006416 ORTHO05D008054 3.3e-116 422.2 289 78.5
Lj9A681T37 Lonicera japonica HOM05D006416 ORTHO05D008054 9.7e-116 420.6 299 76.6
arahy.Tifrunner.gnm1.ann1.L7FLNG Arachis hypogaea HOM05D006416 ORTHO05D008054 2.2e-115 419.5 289 77.9
TAR362G1050 Trochodendron aralioides HOM05D006416 ORTHO05D008054 3.7e-115 418.7 297 76.1
Psat6g148880 Pisum sativum HOM05D006416 ORTHO05D008054 6.3e-115 417.9 298 75.2
PGR031G2709 Punica granatum HOM05D006416 ORTHO05D008054 8.2e-115 417.5 297 76.8
Sed0000831 Sechium edule HOM05D006416 ORTHO05D008054 1.1e-114 417.2 296 77.7
Eucgr.H04456 Eucalyptus grandis HOM05D006416 ORTHO05D008054 3.1e-114 415.6 297 76.1
Lalb_Chr06g0167821 Lupinus albus HOM05D006416 ORTHO05D008054 3.1e-114 415.6 297 75.8
THA.LOC104823736 Tarenaya hassleriana HOM05D006416 ORTHO05D008054 7.0e-114 414.5 303 75.9
Nitab4.5_0007238g0010 Nicotiana tabacum HOM05D006416 ORTHO05D008054 4.5e-113 411.8 299 75.3
MBI19_g27532_MAGBIO Magnolia biondii HOM05D006416 ORTHO05D008054 5.9e-113 411.4 293 75.8
CsaV3_2G004910 Cucumis sativus L. HOM05D006416 ORTHO05D008054 3.8e-112 408.7 313 72.5
TPR.G2722 Trifolium pratense HOM05D006416 ORTHO05D008054 3.8e-112 408.7 294 72.8
CAN.G1134.18 Capsicum annuum HOM05D006416 ORTHO05D008054 5.0e-112 408.3 298 75.2
Medtr1g082420 Medicago truncatula HOM05D006416 ORTHO05D008054 8.5e-112 407.5 298 73.8
SpUn0002_0460 Schrenkiella parvula HOM05D006416 ORTHO05D008054 4.2e-111 405.2 293 75.1
Peaxi162Scf00434g00329 Petunia axillaris HOM05D006416 ORTHO05D008054 1.2e-110 403.7 297 73.7
Nitab4.5_0004940g0060 Nicotiana tabacum HOM05D006416 ORTHO05D008054 1.6e-110 403.3 298 72.8
Solyc01g098640.3 Solanum lycopersicum HOM05D006416 ORTHO05D008054 4.7e-110 401.7 298 74.5
Oeu043843.1 Olea europaea HOM05D006416 ORTHO05D008054 6.1e-110 401.4 295 73.6
PGSC0003DMG402028574 Solanum tuberosum HOM05D006416 ORTHO05D008054 1.4e-109 400.2 297 74.7
Sopen01g042190 Solanum pennellii HOM05D006416 ORTHO05D008054 1.8e-109 399.8 297 74.4
Oeu032896.2 Olea europaea HOM05D006416 ORTHO05D008054 6.7e-109 397.9 294 72.8
Lsat_1_v5_gn_8_116020 Lactuca sativa HOM05D006416 ORTHO05D008054 2.0e-108 396.4 300 73.0
Aa31LG2G11890 Aethionema arabicum HOM05D006416 ORTHO05D008054 3.3e-108 395.6 294 72.4
AL1G65240 Arabidopsis lyrata HOM05D006416 ORTHO05D008054 3.3e-108 395.6 295 72.9
CARHR055910 Cardamine hirsuta HOM05D006416 ORTHO05D008054 9.7e-108 394.0 293 72.4
Thhalv10023632m.g Eutrema salsugineum HOM05D006416 ORTHO05D008054 9.7e-108 394.0 296 73.6
BcaB04g20144 Brassica carinata HOM05D006416 ORTHO05D008054 1.3e-107 393.7 294 74.5
A01p27150 Brassica napus HOM05D006416 ORTHO05D008054 1.7e-107 393.3 294 73.1
BraA01t02850Z Brassica rapa HOM05D006416 ORTHO05D008054 1.7e-107 393.3 294 73.1
PSO407G0317 Papaver somniferum HOM05D006416 ORTHO05D008054 1.7e-107 393.3 296 72.0
BcaC09g49606 Brassica carinata HOM05D006416 ORTHO05D008054 2.8e-107 392.5 294 73.1
C01p34560 Brassica napus HOM05D006416 ORTHO05D008054 2.8e-107 392.5 294 73.1
BolC1t03427H Brassica oleracea HOM05D006416 ORTHO05D008054 2.8e-107 392.5 294 73.1
AT1G54780 Arabidopsis thaliana HOM05D006416 ORTHO05D008054 4.8e-107 391.7 295 72.9
Lj5g0006935 Lotus japonicus HOM05D006416 ORTHO05D008054 4.8e-107 391.7 300 72.0
Aqoxy2G03216 Aquilegia oxysepala HOM05D006416 ORTHO05D008054 1.4e-106 390.2 295 70.8
Carub.0002s0864 Capsella rubella HOM05D006416 ORTHO05D008054 1.4e-106 390.2 298 71.5
CSS0022908 Camellia sinensis var. sinensis HOM05D006416 ORTHO05D008054 1.8e-106 389.8 294 72.4
SGA_v2.0_scaffold204G41638 Striga asiatica HOM05D006416 ORTHO05D008054 2.4e-106 389.4 297 71.7
PSO170G0754 Papaver somniferum HOM05D006416 ORTHO05D008054 3.1e-106 389.0 295 71.9
Cc02_g32670 Coffea canephora HOM05D006416 ORTHO05D008054 4.1e-106 388.7 295 73.2
CDE02G0677 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 1.6e-105 386.7 296 71.3
CDE08G0960 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 2.0e-105 386.3 296 71.6
Dinv22903 Davidia involucrata HOM05D006416 ORTHO05D008054 2.7e-105 386.0 229 84.7
Sc16g0008340 Simmondsia chinensis HOM05D006416 ORTHO05D008054 3.5e-105 385.6 295 71.9
MSTRG.2929 Avicennia marina HOM05D006416 ORTHO05D008054 7.7e-105 384.4 297 70.4
DCAR_029435 Daucus carota HOM05D006416 ORTHO05D008054 6.5e-104 381.3 281 73.7
ATR0626G312 Amborella trichopoda HOM05D006416 ORTHO05D008054 7.2e-103 377.9 300 69.7
HanXRQChr09g0258731 Helianthus annuus HOM05D006416 ORTHO05D008054 8.0e-102 374.4 298 71.1
Migut.H00517 Erythranthe guttata HOM05D006416 ORTHO05D008054 5.2e-101 371.7 299 68.2
HanXRQChr15g0486581 Helianthus annuus HOM05D006416 ORTHO05D008054 5.2e-101 371.7 293 69.3
ECA232G3707 Erigeron canadensis HOM05D006416 ORTHO05D008054 8.8e-101 370.9 236 79.2
unitig_899.g15132 Utricularia gibba HOM05D000909 ORTHO05D000928 1.1e-98 364.0 254 74.0
SalBow1G1453 Salvia bowleyana HOM05D006416 ORTHO05D008054 1.8e-98 363.2 297 69.7
Os05g0401100 Oryza sativa ssp. japonica HOM05D006416 ORTHO05D008054 1.2e-97 360.5 234 79.5
HPP92_006953 Vanilla planifolia HOM05D006416 ORTHO05D008054 1.6e-97 360.1 294 68.7
Zm00001eb346800 Zea mays HOM05D006416 ORTHO05D008054 5.5e-95 351.7 294 68.4
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-92 344.0 257 71.2
Pp3c11_19220 Physcomitrium patens HOM05D006416 ORTHO05D008054 5.9e-89 331.6 268 67.5
Pp3c7_6980 Physcomitrium patens HOM05D006416 ORTHO05D008054 2.3e-88 329.7 296 62.8
Migut.C00218 Erythranthe guttata HOM05D006416 ORTHO05D008054 3.9e-88 328.9 222 76.6
SEGI_37406 Sequoiadendron giganteum HOM05D006416 ORTHO05D008054 4.3e-87 325.5 227 71.8
Hma1.2p1_0666F.1_g199430 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 1.2e-86 323.9 230 74.3
SMO329G0005 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 3.2e-82 309.3 236 68.2
Mapoly0079s0006 Marchantia polymorpha HOM05D006416 ORTHO05D008054 3.6e-78 295.8 229 67.2
CBR_g30711 Chara braunii HOM05D006416 ORTHO05D008054 2.9e-75 286.2 245 62.4
SMO353G0282 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 5.1e-72 275.4 203 67.5
Lalb_Chr02g0148391 Lupinus albus HOM05D006416 ORTHO05D008054 2.5e-71 273.1 214 72.0
Aa31LG1G5580 Aethionema arabicum HOM05D006416 ORTHO05D008054 1.5e-60 237.3 137 83.9
Hma1.2p1_0666F.1_g199440 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 2.3e-56 223.4 140 77.9
Cre03.g182150 Chlamydomonas reinhardtii HOM05D006416 ORTHO05D008054 4.6e-49 199.1 225 45.3
MCO01G659 Micromonas commoda HOM05D006416 ORTHO05D008054 1.5e-47 194.1 205 47.8
PRCOL_00003436 Prasinoderma coloniale HOM05D006416 ORTHO05D008054 1.6e-41 174.1 218 42.7
Dinv23978 Davidia involucrata HOM05D006416 ORTHO05D008054 1.7e-35 154.1 89 88.8
arahy.Tifrunner.gnm1.ann1.SGB0EA Arachis hypogaea HOM05D006416 ORTHO05D008054 2.9e-35 153.3 86 87.2
Lalb_Chr02g0148401 Lupinus albus HOM05D006416 ORTHO05D008054 2.7e-33 146.7 83 89.2
Haze_01725 Corylus avellana HOM05D006416 ORTHO05D008054 1.6e-25 120.9 64 87.5
AUR62000865 Chenopodium quinoa HOM05D006416 ORTHO05D008054 1.0e-08 65.1 87 56.3


User provided reference genes

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