Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.1e-192 675.6 371 100.0
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 8.4e-165 583.9 371 85.4
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 3.0e-162 575.5 447 74.0
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 3.3e-161 572.0 372 84.7
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 1.6e-144 516.5 374 80.2
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 8.2e-144 514.2 366 78.4
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 9.0e-143 510.8 375 77.1
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.3e-141 506.9 376 75.5
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.2e-140 501.9 398 70.6
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.1e-139 499.6 398 70.4
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.1e-139 499.6 398 70.4
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 6.1e-139 498.0 380 72.9
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.1e-135 487.3 370 73.8
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.5e-134 483.4 372 73.7
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 3.8e-133 478.8 401 69.3
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 3.8e-133 478.8 371 72.2
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 6.1e-131 471.5 396 69.4
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 6.1e-131 471.5 403 68.5
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.9e-131 471.1 372 72.3
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 1.3e-128 463.8 362 71.0
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 1.7e-128 463.4 377 69.5
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.4e-127 460.3 359 72.1
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.4e-127 460.3 371 70.4
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 4.1e-127 458.8 367 71.4
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 9.1e-127 457.6 390 70.5
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 9.1e-127 457.6 378 68.3
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.6e-126 456.1 378 68.0
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 8.5e-125 451.1 358 70.1
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 2.5e-124 449.5 386 67.6
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 8.0e-123 444.5 378 66.9
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 8.0e-123 444.5 378 66.9
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 3.0e-122 442.6 376 68.1
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 7.0e-119 431.4 335 72.8
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 7.7e-118 427.9 386 64.8
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.5e-117 424.9 292 79.5
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.9e-116 423.3 363 67.8
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 1.9e-116 423.3 367 66.5
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 2.5e-116 422.9 372 67.5
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.4e-114 417.2 378 69.6
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.2e-113 414.1 387 63.0
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.2e-113 414.1 376 64.9
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 1.5e-113 413.7 372 66.7
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.7e-112 410.2 384 64.1
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 4.8e-112 408.7 374 63.9
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.4e-111 407.1 383 63.4
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.4e-111 407.1 405 58.8
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 2.4e-111 406.4 403 60.5
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.6e-110 403.7 397 60.7
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 1.0e-109 401.0 380 64.5
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 2.2e-109 399.8 396 60.9
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 2.9e-109 399.4 404 60.4
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 8.5e-109 397.9 376 63.0
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 1.6e-107 393.7 387 59.2
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 8.0e-107 391.3 351 65.0
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 1.0e-106 391.0 422 58.3
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 6.8e-106 388.3 379 60.4
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 2.6e-105 386.3 382 63.1
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 3.4e-105 386.0 400 57.5
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 3.4e-105 386.0 379 60.4
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 5.7e-105 385.2 425 60.2
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 9.8e-105 384.4 430 56.3
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 1.7e-104 383.6 422 60.4
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 3.7e-104 382.5 383 57.7
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.1e-103 380.9 373 60.3
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 1.8e-103 380.2 472 51.9
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.8e-103 380.2 412 56.6
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 5.0e-101 372.1 371 61.7
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 2.5e-100 369.8 375 60.0
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 5.6e-100 368.6 425 58.4
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 1.2e-99 367.5 383 59.0
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.6e-99 367.1 447 53.0
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 4.7e-99 365.5 387 59.4
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 1.8e-98 363.6 302 65.6
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 4.0e-98 362.5 302 65.2
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 5.2e-98 362.1 468 50.6
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 1.3e-96 357.5 459 52.1
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 4.9e-96 355.5 376 59.6
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 6.4e-96 355.1 461 54.2
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.8e-95 353.6 439 53.1
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 2.4e-95 353.2 330 60.9
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.2e-94 350.9 488 49.0
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 1.6e-94 350.5 461 51.2
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 1.6e-94 350.5 456 50.4
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 4.6e-94 349.0 345 61.2
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.0e-93 346.3 389 57.3
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 3.9e-93 345.9 385 56.9
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 8.6e-93 344.7 340 65.9
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 1.1e-92 344.4 490 48.6
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 1.2e-91 340.9 427 52.7
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 1.6e-91 340.5 461 48.2
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 3.6e-91 339.3 460 48.0
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 4.7e-91 339.0 355 58.3
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 6.2e-91 338.6 387 56.1
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.3e-90 336.7 374 55.9
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 4.0e-90 335.9 383 54.0
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 5.2e-90 335.5 391 54.0
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 6.8e-90 335.1 346 59.8
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.0e-89 333.6 389 56.6
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 2.6e-89 333.2 472 47.2
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 4.4e-89 332.4 456 49.6
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 4.4e-89 332.4 456 49.6
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 1.3e-88 330.9 485 47.8
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 1.4e-87 327.4 389 53.5
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 2.7e-86 323.2 384 55.2
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 6.6e-85 318.5 482 46.7
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 3.6e-83 312.8 357 56.3
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.8e-82 310.5 423 53.0
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 8.3e-80 301.6 465 46.9
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 3.2e-79 299.7 403 50.9
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.7e-77 293.9 335 53.1
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.9e-77 292.7 319 59.2
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 1.2e-75 287.7 334 54.8
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 4.7e-75 285.8 290 62.8
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 2.0e-73 280.4 276 62.3
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 5.6e-68 262.3 331 51.7
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 9.6e-68 261.5 348 49.7
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.7e-64 250.8 368 51.9
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 6.4e-64 248.8 289 54.7
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.5e-62 243.0 439 40.1
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 3.0e-61 240.0 427 43.8
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 6.6e-61 238.8 356 47.2
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 5.6e-60 235.7 311 52.4
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 9.6e-60 235.0 397 41.8
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 1.1e-58 231.5 264 57.6
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.2e-56 223.8 378 45.0
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 1.3e-51 208.0 378 44.7
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 3.7e-43 179.9 136 70.6
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 4.9e-40 169.5 333 40.8
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.3e-37 161.4 272 46.3
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 4.3e-28 129.8 76 88.2
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 4.3e-28 129.8 157 53.5
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 4.5e-25 119.8 75 78.7
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 5.5e-23 112.8 367 35.7
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 5.5e-23 112.8 138 47.1
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 3.6e-22 110.2 249 36.1
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.0e-20 104.4 71 71.8
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 7.4e-20 102.4 83 73.5
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 4.8e-19 99.8 65 70.8
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 1.4e-18 98.2 64 73.4
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 2.4e-18 97.4 64 73.4
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 5.0e-16 89.7 112 50.9
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 6.5e-16 89.4 164 40.9
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.1e-15 88.6 66 66.7
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 1.1e-15 88.6 93 54.8
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.9e-15 87.8 56 75.0
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 2.5e-15 87.4 194 40.2
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.0e-09 67.8 52 73.1
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.0e-09 67.8 52 73.1
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.0e-09 67.8 52 73.1
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 2.6e-09 67.4 52 73.1
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 4.5e-09 66.6 52 71.2
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 5.9e-09 66.2 52 71.2
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 1.7e-08 64.7 107 46.7
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 2.2e-08 64.3 251 33.9
Gohir.D05G046500 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.5e-08 62.4 52 69.2
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.5e-08 62.4 103 44.7
Actinidia19788 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.2e-07 60.5 36 80.6


User provided reference genes

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