Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.7e-134 482.6 240 100.0
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 8.2e-121 437.2 239 90.0
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 8.5e-118 427.2 239 86.6
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 1.2e-100 370.2 239 74.5
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 4.1e-96 355.1 245 71.4
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 6.6e-94 347.8 243 70.8
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 1.1e-93 347.1 245 70.2
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 3.3e-93 345.5 239 69.9
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 3.3e-93 345.5 244 70.5
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 4.3e-93 345.1 246 68.7
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 4.3e-93 345.1 238 69.7
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 7.3e-93 344.4 241 70.5
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 9.5e-93 344.0 243 69.5
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 2.1e-92 342.8 239 68.6
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 2.1e-92 342.8 246 68.7
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 3.6e-92 342.0 245 68.6
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 6.1e-92 341.3 245 68.2
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 8.0e-92 340.9 239 69.0
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 8.0e-92 340.9 246 67.9
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 8.0e-92 340.9 244 68.9
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 1.4e-91 340.1 244 68.4
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 5.2e-91 338.2 239 68.2
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 1.2e-90 337.0 244 67.6
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 2.6e-90 335.9 239 66.5
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 3.4e-90 335.5 237 66.2
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 4.4e-90 335.1 245 66.9
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 1.3e-89 333.6 237 67.1
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 1.7e-89 333.2 242 66.5
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 4.9e-89 331.6 247 67.6
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 1.1e-88 330.5 245 65.7
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 1.1e-88 330.5 238 66.4
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 1.4e-88 330.1 237 65.8
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 1.8e-88 329.7 239 66.1
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 1.8e-88 329.7 243 65.8
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 5.4e-88 328.2 237 63.3
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 7.0e-88 327.8 244 65.2
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 9.2e-88 327.4 239 65.7
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.2e-87 327.0 239 66.1
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 2.0e-87 326.2 245 63.7
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 2.0e-87 326.2 239 65.3
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 4.6e-87 325.1 239 65.7
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 7.8e-87 324.3 243 64.2
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.3e-86 323.6 237 66.2
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 1.3e-86 323.6 238 67.2
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 3.0e-86 322.4 242 64.5
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 3.0e-86 322.4 239 65.3
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 3.9e-86 322.0 243 63.4
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 3.9e-86 322.0 241 64.7
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 3.9e-86 322.0 236 64.8
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 3.9e-86 322.0 236 64.8
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 5.0e-86 321.6 239 65.3
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 5.0e-86 321.6 239 64.4
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 8.6e-86 320.9 237 62.4
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 1.1e-85 320.5 238 66.8
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 1.1e-85 320.5 237 65.4
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 7.3e-85 317.8 237 61.6
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.2e-84 317.0 237 64.6
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 6.2e-84 314.7 239 63.6
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 3.1e-83 312.4 237 61.6
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 5.2e-83 311.6 243 63.0
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 8.9e-83 310.8 239 60.7
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 8.9e-83 310.8 239 63.2
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 1.2e-82 310.5 282 56.0
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.2e-82 310.5 246 61.4
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 1.5e-82 310.1 237 62.9
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 2.6e-82 309.3 237 60.3
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 5.8e-82 308.1 241 61.8
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 7.5e-82 307.8 239 61.5
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 1.7e-81 306.6 230 66.1
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 1.7e-81 306.6 242 62.0
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 2.2e-81 306.2 237 59.9
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 2.9e-81 305.8 245 61.2
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 1.4e-80 303.5 239 62.8
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 3.2e-80 302.4 245 61.2
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 4.1e-80 302.0 267 57.3
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 2.0e-79 299.7 238 61.8
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 3.5e-79 298.9 243 58.4
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 6.0e-79 298.1 238 60.9
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 6.0e-79 298.1 242 59.1
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 7.8e-79 297.7 243 59.7
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 7.8e-79 297.7 225 62.2
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 7.8e-79 297.7 201 71.1
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 2.5e-77 292.7 195 72.8
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 3.3e-77 292.4 244 58.6
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 7.3e-77 291.2 195 71.3
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 2.1e-76 289.7 201 69.7
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 6.2e-76 288.1 216 64.8
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 6.4e-73 278.1 254 56.7
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 1.2e-71 273.9 177 72.3
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 1.6e-71 273.5 210 60.0
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 2.7e-71 272.7 237 56.1
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 3.5e-71 272.3 210 59.5
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 7.3e-69 264.6 246 56.1
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 2.1e-68 263.1 211 58.8
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 2.1e-68 263.1 224 58.0
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 6.2e-68 261.5 196 65.8
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 8.1e-68 261.2 211 58.3
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 8.1e-68 261.2 211 58.3
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 8.1e-68 261.2 211 58.3
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 3.1e-67 259.2 192 62.5
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.7e-65 253.4 236 54.2
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.2e-65 253.1 239 50.2
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.4e-64 250.4 203 59.1
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.4e-64 249.6 239 48.5
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.1e-64 248.8 237 49.8
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.6e-63 246.9 237 48.9
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 3.5e-63 245.7 238 50.0
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 5.1e-62 241.9 190 62.1
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 2.5e-61 239.6 230 54.3
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 9.6e-61 237.7 239 52.3
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.5e-58 230.3 235 47.2
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.6e-58 229.6 200 53.0
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-57 227.3 213 50.7
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 6.4e-57 224.9 169 60.9
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 3.2e-56 222.6 243 53.5
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 9.3e-56 221.1 195 57.4
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 4.6e-55 218.8 182 57.7
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 4.6e-55 218.8 164 61.0
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 5.1e-54 215.3 240 48.3
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 2.5e-53 213.0 145 71.7
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 2.4e-51 206.5 215 47.4
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.0e-51 205.7 218 46.3
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.0e-50 203.4 190 55.8
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.7e-49 200.3 196 55.1
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 3.5e-47 192.6 169 58.0
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 1.3e-46 190.7 166 56.6
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 2.3e-46 189.9 226 45.6
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.8e-44 183.0 194 45.9
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 3.7e-44 182.6 172 55.2
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 8.1e-44 181.4 108 80.6
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 9.9e-42 174.5 195 46.7
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 1.1e-40 171.0 236 41.5
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 2.4e-40 169.9 131 62.6
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.6e-39 167.2 186 47.3
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 1.8e-38 163.7 219 39.3
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 2.8e-36 156.4 105 72.4
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 3.1e-35 152.9 105 67.6
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 2.6e-34 149.8 105 63.8
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.8e-30 137.1 106 57.5
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 9.7e-29 131.3 204 42.6
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 4.8e-28 129.0 158 45.6
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 5.3e-27 125.6 100 62.0
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 7.2e-24 115.2 161 38.5
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 6.9e-19 98.6 83 53.0
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 2.2e-17 93.6 67 64.2
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-13 78.6 81 44.4
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 5.3e-11 72.4 107 36.4
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 6.9e-11 72.0 72 51.4
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 9.1e-11 71.6 108 37.0
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 3.8e-09 66.2 61 55.7


User provided reference genes

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