Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 1.5e-262 909.1 498 100.0
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 6.5e-205 717.6 528 78.0
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 6.4e-168 594.7 500 66.2
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 1.2e-158 563.9 445 68.3
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 3.4e-153 545.8 513 56.7
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 1.6e-147 526.9 432 66.7
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 4.8e-147 525.4 500 58.4
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 1.8e-146 523.5 445 64.5
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 3.1e-146 522.7 500 57.0
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.1e-146 522.7 413 63.9
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 6.9e-146 521.5 504 59.7
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 9.0e-146 521.2 426 67.8
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 5.8e-145 518.5 498 57.4
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 1.7e-144 516.9 498 59.8
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 8.4e-144 514.6 504 57.1
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 1.0e-141 507.7 501 55.5
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 3.0e-141 506.1 480 60.8
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 3.0e-141 506.1 499 56.1
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 5.1e-141 505.4 500 62.4
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 1.5e-140 503.8 498 61.2
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.9e-140 503.4 448 61.8
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 5.6e-140 501.9 413 62.0
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.1e-139 500.0 447 59.7
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 4.0e-138 495.7 452 61.5
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 4.5e-137 492.3 394 62.9
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 1.3e-136 490.7 500 55.2
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.7e-136 490.3 399 63.4
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 2.2e-136 490.0 505 56.4
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 5.5e-135 485.3 422 62.3
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 5.5e-135 485.3 497 57.7
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 9.3e-135 484.6 498 55.6
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 1.2e-134 484.2 498 55.4
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 1.2e-134 484.2 433 59.6
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 3.5e-134 482.6 504 53.6
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 4.6e-134 482.3 503 52.5
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 4.6e-134 482.3 498 58.4
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.3e-133 480.7 422 61.6
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 3.0e-133 479.6 435 58.2
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 6.7e-133 478.4 447 56.6
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 1.9e-132 476.9 502 54.8
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 2.5e-132 476.5 505 53.7
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 2.5e-132 476.5 393 62.3
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 3.3e-132 476.1 496 51.8
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 5.7e-132 475.3 496 51.6
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 7.4e-132 474.9 438 56.4
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 7.4e-132 474.9 438 56.4
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 1.6e-131 473.8 496 51.6
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 1.6e-131 473.8 443 58.2
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 2.1e-131 473.4 496 51.6
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 2.1e-131 473.4 496 51.6
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 1.1e-130 471.1 429 58.3
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 1.4e-130 470.7 437 56.1
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 1.8e-130 470.3 443 57.3
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 2.6e-129 466.5 498 53.6
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 2.6e-129 466.5 447 55.9
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 3.4e-129 466.1 431 59.9
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 2.9e-128 463.0 431 55.5
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 8.4e-128 461.5 428 59.3
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 8.4e-128 461.5 496 56.2
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 3.5e-126 456.1 503 52.7
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 6.3e-123 445.3 448 54.9
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 1.1e-122 444.5 383 59.5
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 4.1e-122 442.6 436 54.4
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 9.0e-122 441.4 435 57.2
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 2.0e-121 440.3 443 53.3
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 5.9e-121 438.7 356 66.3
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 7.7e-121 438.3 500 53.0
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 5.0e-120 435.6 499 53.3
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 1.9e-119 433.7 503 53.9
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 2.5e-119 433.3 397 58.2
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 3.2e-119 433.0 445 53.0
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 3.2e-119 433.0 346 65.0
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 9.4e-119 431.4 452 53.3
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 4.6e-118 429.1 465 53.5
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 1.4e-117 427.6 422 56.6
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 5.1e-117 425.6 435 53.8
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 5.7e-116 422.2 443 50.6
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 6.3e-115 418.7 363 59.5
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 2.0e-113 413.7 414 53.9
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 3.4e-113 412.9 345 62.6
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 9.4e-111 404.8 357 58.0
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 9.4e-111 404.8 357 58.0
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 7.9e-110 401.7 428 52.1
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 3.9e-109 399.4 465 48.4
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 2.0e-108 397.1 400 49.8
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 2.2e-107 393.7 418 55.0
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 5.3e-106 389.0 355 56.6
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 4.5e-105 386.0 344 59.6
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 2.0e-100 370.5 359 54.6
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 2.8e-99 366.7 414 53.1
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 1.5e-95 354.4 331 56.8
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 3.4e-92 343.2 433 43.9
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 4.8e-91 339.3 341 53.7
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 4.5e-81 306.2 273 53.5
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 1.7e-72 277.7 326 55.5
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 3.9e-64 250.0 181 66.3
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 2.5e-63 247.3 445 36.0
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 9.5e-63 245.4 404 38.9
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 2.8e-62 243.8 456 33.1
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 9.2e-58 228.8 368 37.5
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 1.2e-54 218.4 495 34.1
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 1.3e-51 208.4 318 41.2
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 2.6e-44 184.1 385 34.8
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 7.1e-42 176.0 292 40.1
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 1.0e-40 172.2 195 49.2
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 4.9e-35 153.3 186 50.0
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 9.3e-34 149.1 202 41.1
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 4.6e-33 146.7 198 49.0
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.8e-32 144.8 199 46.2
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 6.7e-16 89.7 83 73.5
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.1e-13 82.4 86 62.8
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 2.4e-13 81.3 86 61.6
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 2.6e-12 77.8 63 54.0
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 1.0e-11 75.9 84 66.7
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 8.5e-11 72.8 90 63.3
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 2.5e-10 71.2 57 61.4
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 2.7e-09 67.8 81 61.7
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 3.9e-08 63.9 87 46.0
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 7.4e-07 59.7 64 50.0


User provided reference genes

Program Settings