Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 7.8e-177 623.6 304 100.0
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 2.1e-174 615.5 304 99.0
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 2.8e-174 615.1 304 99.0
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 5.6e-167 590.9 304 93.4
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 5.7e-151 537.7 303 83.2
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 2.2e-150 535.8 301 82.7
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 4.1e-149 531.6 304 81.2
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 6.9e-149 530.8 304 81.2
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 6.9e-149 530.8 297 81.8
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 2.6e-148 528.9 307 83.7
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 3.4e-148 528.5 301 82.7
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 5.0e-147 524.6 301 81.1
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 6.5e-147 524.2 301 82.4
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 4.2e-146 521.5 304 79.9
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 1.6e-145 519.6 300 79.3
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 6.1e-145 517.7 308 78.2
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 1.0e-144 516.9 301 78.7
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.0e-144 516.9 302 80.8
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.8e-144 516.2 308 78.2
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 3.9e-144 515.0 304 78.3
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 6.7e-144 514.2 299 78.9
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 8.8e-144 513.8 304 78.3
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 1.5e-143 513.1 302 80.1
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 1.5e-143 513.1 302 79.8
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 2.0e-143 512.7 302 79.5
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 5.7e-143 511.1 302 79.5
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 9.7e-143 510.4 302 79.1
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 1.3e-142 510.0 303 78.2
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 1.7e-142 509.6 300 78.7
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 1.7e-142 509.6 300 78.3
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 2.2e-142 509.2 301 79.7
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 4.8e-142 508.1 304 76.0
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.4e-141 506.5 304 77.3
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 1.8e-141 506.1 309 78.0
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 2.4e-141 505.8 301 79.1
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 2.4e-141 505.8 302 79.5
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 4.1e-141 505.0 302 79.5
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 6.9e-141 504.2 300 76.0
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 9.1e-141 503.8 302 79.1
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 1.5e-140 503.1 304 75.7
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 1.0e-139 500.4 302 76.8
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 1.7e-139 499.6 304 78.0
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 1.7e-139 499.6 303 75.2
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 2.2e-139 499.2 302 78.1
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 2.9e-139 498.8 302 75.8
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 5.0e-139 498.0 302 78.1
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 8.5e-139 497.3 302 76.2
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 1.1e-138 496.9 299 76.3
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 1.4e-138 496.5 301 77.4
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 1.4e-138 496.5 302 76.8
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 1.9e-138 496.1 299 76.3
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 4.2e-138 495.0 301 74.4
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 5.5e-138 494.6 301 75.1
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 5.5e-138 494.6 300 74.3
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 2.1e-137 492.7 302 74.8
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 3.0e-136 488.8 301 73.8
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 3.0e-136 488.8 302 74.5
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 5.1e-136 488.0 301 74.8
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 6.7e-136 487.6 298 74.5
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 8.8e-136 487.3 302 75.8
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 8.8e-136 487.3 302 74.2
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 2.0e-135 486.1 299 72.9
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 7.4e-135 484.2 301 73.1
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 7.4e-135 484.2 302 74.5
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 1.3e-134 483.4 300 73.7
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 2.8e-134 482.3 376 63.0
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 4.8e-134 481.5 309 72.2
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 6.3e-134 481.1 305 72.5
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 1.1e-133 480.3 295 73.6
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 1.1e-133 480.3 306 72.9
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 1.8e-133 479.6 306 72.5
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 9.1e-133 477.2 304 72.7
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.2e-132 476.9 301 76.4
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 1.5e-132 476.5 309 71.8
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 1.5e-132 476.5 305 72.8
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 2.0e-132 476.1 302 73.5
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 3.5e-132 475.3 307 72.3
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 3.5e-132 475.3 301 75.7
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 1.0e-131 473.8 298 71.8
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 2.2e-131 472.6 308 71.1
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.2e-131 472.6 302 72.5
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 2.9e-131 472.2 309 71.5
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 2.9e-131 472.2 372 63.2
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 3.8e-131 471.9 301 72.1
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 6.5e-131 471.1 301 71.8
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 1.9e-130 469.5 300 71.3
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 4.2e-130 468.4 308 71.1
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 5.5e-130 468.0 308 71.1
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 5.5e-130 468.0 314 71.0
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 5.5e-130 468.0 338 68.6
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 2.1e-129 466.1 309 70.2
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 2.1e-129 466.1 301 73.4
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 2.7e-129 465.7 311 74.0
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 6.1e-129 464.5 306 70.6
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 3.9e-128 461.8 298 71.1
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.7e-126 456.4 314 69.1
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 2.8e-126 455.7 326 67.2
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 3.7e-126 455.3 301 71.8
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 1.1e-125 453.8 304 70.4
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 4.1e-125 451.8 301 67.4
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 8.5e-123 444.1 271 77.1
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 4.7e-121 438.3 297 66.7
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 2.4e-117 426.0 297 65.3
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 3.5e-116 422.2 307 67.8
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 1.3e-115 420.2 254 76.8
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 3.7e-110 402.1 266 69.9
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 2.9e-107 392.5 254 71.3
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.4e-101 372.9 238 72.3
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 2.9e-99 365.9 300 59.0
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 2.8e-97 359.4 299 54.5
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 2.6e-95 352.8 265 67.9
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 1.1e-93 347.4 201 81.1
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 6.0e-92 341.7 216 71.3
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 5.6e-90 335.1 303 57.1
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 8.0e-89 331.3 290 54.5
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 8.9e-88 327.8 297 52.5
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 5.4e-85 318.5 210 70.0
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 6.6e-83 311.6 177 79.7
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 4.7e-81 305.4 177 78.0
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 5.8e-71 271.9 179 72.6
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 4.6e-68 262.3 181 71.8
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 4.3e-66 255.8 237 51.9
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 8.1e-65 251.5 143 80.4
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 1.2e-55 221.1 170 61.2
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 4.6e-52 209.1 179 55.9
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.1e-50 204.5 129 75.2
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 2.1e-49 200.3 130 71.5
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 1.5e-47 194.1 130 73.1
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 2.5e-45 186.8 107 81.3
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 1.8e-43 180.6 123 69.1
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 9.0e-40 168.3 145 58.6
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 2.2e-38 163.7 101 76.2
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.0e-35 154.8 102 70.6
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.8e-35 154.1 102 72.5
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 2.2e-33 147.1 102 67.6
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 9.4e-21 105.1 94 52.1
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 4.4e-18 96.3 52 78.8


User provided reference genes

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