Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G008200 Populus trichocarpa HOM05D006340 ORTHO05D007568 4.4e-262 907.9 649 100.0
Sabra13G0006900 Salix brachista HOM05D006340 ORTHO05D007568 1.3e-232 810.1 656 82.6
Potri.005G013000 Populus trichocarpa HOM05D006340 ORTHO05D007568 2.6e-201 706.1 645 86.2
Sabra05G0021400 Salix brachista HOM05D006340 ORTHO05D007568 6.0e-174 615.1 678 56.8
QL03p014074 Quercus lobata HOM05D006340 ORTHO05D007568 1.6e-158 563.9 653 75.2
Haze_04056 Corylus avellana HOM05D006340 ORTHO05D007568 3.4e-145 519.6 653 69.1
Cfa006707 Carpinus fangiana HOM05D006340 ORTHO05D007568 8.4e-144 515.0 653 72.3
Manes.09G177400 Manihot esculenta HOM05D006340 ORTHO05D007568 9.3e-143 511.5 656 65.2
TAR362G0132 Trochodendron aralioides HOM05D006340 ORTHO05D007568 3.5e-142 509.6 659 70.7
CiPaw.07G030100 Carya illinoinensis HOM05D006340 ORTHO05D007568 7.6e-137 491.9 651 71.1
CSS0010691 Camellia sinensis var. sinensis HOM05D006340 ORTHO05D007568 2.4e-135 486.9 657 70.2
Ciclev10000538m.g Citrus clementina HOM05D006340 ORTHO05D007568 7.9e-134 481.9 650 70.6
TWI36G0703 Tripterygium wilfordii HOM05D006340 ORTHO05D007568 1.8e-133 480.7 652 71.0
Atru.chr2.357 Acer truncatum HOM05D006340 ORTHO05D007568 6.2e-131 472.2 660 68.6
Thecc.05G323700 Theobroma cacao HOM05D006340 ORTHO05D007568 3.1e-130 469.9 651 69.3
Prupe.6G312400 Prunus persica HOM05D006340 ORTHO05D007568 1.2e-129 468.0 653 69.2
Duzib177G0712 Durio zibethinus HOM05D006340 ORTHO05D007568 2.5e-127 460.3 652 69.5
Cpa.g.sc48.167 Carica papaya HOM05D006340 ORTHO05D007568 1.5e-121 441.0 656 68.0
Actinidia35518 Actinidia chinensis HOM05D006340 ORTHO05D007568 6.5e-120 435.6 654 67.7
Hma1.2p1_0008F-1.1_g005560 Hydrangea macrophylla HOM05D006340 ORTHO05D007568 1.9e-119 434.1 658 67.2
Dinv30898 Davidia involucrata HOM05D006340 ORTHO05D007568 2.5e-119 433.7 656 48.8
MD00G1208300 Malus domestica HOM05D006340 ORTHO05D007568 2.5e-119 433.7 647 66.8
GSVIVG01031248001 Vitis vinifera HOM05D006340 ORTHO05D007568 6.1e-118 429.1 653 66.9
TAR633G1326 Trochodendron aralioides HOM05D006340 ORTHO05D007568 2.3e-117 427.2 659 66.2
Actinidia16863 Actinidia chinensis HOM05D006340 ORTHO05D007568 2.5e-116 423.7 682 56.6
Lju926C5T2 Lonicera japonica HOM05D006340 ORTHO05D007568 5.7e-116 422.5 651 62.2
Duzib128G1170 Durio zibethinus HOM05D006340 ORTHO05D007568 6.3e-115 419.1 644 66.9
CiPaw.08G154900 Carya illinoinensis HOM05D006340 ORTHO05D007568 8.2e-115 418.7 650 66.9
Gohir.D11G284300 Gossypium hirsutum HOM05D006340 ORTHO05D007568 4.1e-114 416.4 654 66.8
COL.COLO4_05545 Corchorus olitorius HOM05D006340 ORTHO05D007568 5.3e-114 416.0 654 66.5
MBI18_g32031_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 2.9e-112 410.2 665 50.5
Sed0011043 Sechium edule HOM05D006340 ORTHO05D007568 3.8e-112 409.8 655 65.5
MD12G1205300 Malus domestica HOM05D006340 ORTHO05D007568 4.2e-111 406.4 651 65.4
CANSAT54G2981 Cannabis sativa HOM05D006340 ORTHO05D007568 9.4e-111 405.2 654 66.2
Gorai.007G307200 Gossypium raimondii HOM05D006340 ORTHO05D007568 2.1e-110 404.1 654 66.2
CsaV3_2G007150 Cucumis sativus L. HOM05D006340 ORTHO05D007568 1.8e-109 401.0 639 66.5
Glyma.20G096700 Glycine max HOM05D006340 ORTHO05D007568 2.6e-108 397.1 654 64.8
ClCG02G014860 Citrullus lanatus HOM05D006340 ORTHO05D007568 4.8e-107 392.9 664 50.2
Phvul.007G201700 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 4.8e-107 392.9 650 64.2
Glyma.10G146700 Glycine max HOM05D006340 ORTHO05D007568 8.2e-107 392.1 649 64.9
Ca_10176_v3 Cicer arietinum L. HOM05D006340 ORTHO05D007568 1.2e-105 388.3 654 62.5
Medtr1g084120 Medicago truncatula HOM05D006340 ORTHO05D007568 2.6e-105 387.1 651 59.3
Sed0017369 Sechium edule HOM05D006340 ORTHO05D007568 1.9e-103 380.9 650 63.2
Nn3g21728 Nelumbo nucifera HOM05D006340 ORTHO05D007568 3.2e-103 380.2 654 63.8
MELO3C004178.2 Cucumis melo HOM05D006340 ORTHO05D007568 5.7e-100 369.4 649 54.9
Gohir.A08G205400 Gossypium hirsutum HOM05D006340 ORTHO05D007568 7.4e-100 369.0 654 63.5
Gorai.004G236300 Gossypium raimondii HOM05D006340 ORTHO05D007568 4.8e-99 366.3 652 63.3
VMungo0720G2454 Vigna mungo HOM05D006340 ORTHO05D007568 1.8e-98 364.4 650 62.9
Aqoxy2G02721 Aquilegia oxysepala HOM05D006340 ORTHO05D007568 9.1e-98 362.1 660 63.2
PSO761G0363 Papaver somniferum HOM05D006340 ORTHO05D007568 1.2e-97 361.7 647 61.2
Cc02_g35160 Coffea canephora HOM05D006340 ORTHO05D007568 1.6e-97 361.3 651 57.9
vmacro01568 Vaccinium macrocarpon HOM05D006340 ORTHO05D007568 2.6e-97 360.5 659 54.3
DCAR_025287 Daucus carota HOM05D006340 ORTHO05D007568 3.5e-97 360.1 653 61.7
Sabra05G0020900 Salix brachista HOM05D006340 ORTHO05D007568 3.5e-97 360.1 271 70.8
TPR.G2586 Trifolium pratense HOM05D006340 ORTHO05D007568 1.0e-96 358.6 664 60.7
Gohir.D08G222500 Gossypium hirsutum HOM05D006340 ORTHO05D007568 1.5e-95 354.8 652 62.9
Lj5C328T5 Lonicera japonica HOM05D006340 ORTHO05D007568 1.0e-93 348.6 650 56.9
Rhsim11G0096500 Rhododendron simsii HOM05D006340 ORTHO05D007568 1.3e-91 341.7 656 58.7
arahy.Tifrunner.gnm1.ann1.31L8TN Arachis hypogaea HOM05D006340 ORTHO05D007568 2.2e-91 340.9 668 60.6
MBI19_g03242_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 6.3e-91 339.3 660 50.9
Lalb_Chr02g0147781 Lupinus albus HOM05D006340 ORTHO05D007568 2.4e-90 337.4 648 58.6
arahy.Tifrunner.gnm1.ann1.35WTTC Arachis hypogaea HOM05D006340 ORTHO05D007568 3.1e-90 337.0 665 60.6
Dinv24462 Davidia involucrata HOM05D006340 ORTHO05D007568 2.0e-89 334.3 355 54.1
Lj5g0007706 Lotus japonicus HOM05D006340 ORTHO05D007568 3.5e-89 333.6 649 59.6
Nitab4.5_0004525g0020 Nicotiana tabacum HOM05D006340 ORTHO05D007568 5.9e-89 332.8 655 58.2
Lsat_1_v5_gn_5_40480 Lactuca sativa HOM05D006340 ORTHO05D007568 1.7e-88 331.3 650 60.3
PGSC0003DMG400002763 Solanum tuberosum HOM05D006340 ORTHO05D007568 1.7e-88 331.3 664 62.3
CAN.G1076.21 Capsicum annuum HOM05D006340 ORTHO05D007568 2.9e-88 330.5 665 57.3
PSO210G6591 Papaver somniferum HOM05D006340 ORTHO05D007568 3.2e-87 327.0 555 67.0
Sopen01g044100 Solanum pennellii HOM05D006340 ORTHO05D007568 2.7e-86 323.9 664 62.0
AUR62006742 Chenopodium quinoa HOM05D006340 ORTHO05D007568 2.3e-85 320.9 654 60.6
Nitab4.5_0001338g0100 Nicotiana tabacum HOM05D006340 ORTHO05D007568 1.2e-84 318.5 687 54.7
RcHm_v2.0_Chr3g0457201 Rosa chinensis HOM05D006340 ORTHO05D007568 2.6e-84 317.4 679 58.5
Eucgr.H03294 Eucalyptus grandis HOM05D006340 ORTHO05D007568 3.4e-84 317.0 645 60.8
ECA246G2180 Erigeron canadensis HOM05D006340 ORTHO05D007568 3.7e-83 313.5 642 61.8
HanXRQChr11g0324231 Helianthus annuus HOM05D006340 ORTHO05D007568 1.8e-82 311.2 651 61.4
AUR62000387 Chenopodium quinoa HOM05D006340 ORTHO05D007568 1.6e-81 308.1 654 59.9
Psat6g152600 Pisum sativum HOM05D006340 ORTHO05D007568 2.7e-81 307.4 499 53.1
Glyma.03G231000 Glycine max HOM05D006340 ORTHO05D007568 5.9e-81 306.2 650 60.0
Zm00001eb130130 Zea mays HOM05D006340 ORTHO05D007568 8.5e-80 302.4 643 51.0
Glyma.19G228200 Glycine max HOM05D006340 ORTHO05D007568 1.9e-79 301.2 650 60.0
Sabra05G0020800 Salix brachista HOM05D006340 ORTHO05D007568 4.2e-79 300.1 370 75.1
Phvul.001G224800 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 2.1e-78 297.7 654 59.2
Os01g0300900 Oryza sativa ssp. japonica HOM05D006340 ORTHO05D007568 1.4e-77 295.0 647 53.6
PGR031G1700 Punica granatum HOM05D006340 ORTHO05D007568 2.3e-77 294.3 641 59.9
Sabra05G0022400 Salix brachista HOM05D006340 ORTHO05D007568 2.3e-77 294.3 229 67.7
ATR0693G206 Amborella trichopoda HOM05D006340 ORTHO05D007568 5.2e-77 293.1 655 57.9
DCAR_029344 Daucus carota HOM05D006340 ORTHO05D007568 4.9e-75 286.6 647 44.7
FvH4_6g07501 Fragaria vesca HOM05D006340 ORTHO05D007568 1.1e-74 285.4 680 57.6
VMungo1383G0056 Vigna mungo HOM05D006340 ORTHO05D007568 1.1e-74 285.4 652 57.8
Zm00001eb340330 Zea mays HOM05D006340 ORTHO05D007568 5.4e-74 283.1 644 54.2
Oeu052936.1 Olea europaea HOM05D006340 ORTHO05D007568 1.2e-73 282.0 651 57.8
FAN14G3207 Fragaria x ananassa HOM05D006340 ORTHO05D007568 2.0e-73 281.2 680 57.5
FAN02G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 3.5e-73 280.4 678 57.8
Hund07311 Selenicereus undatus HOM05D006340 ORTHO05D007568 4.5e-73 280.0 639 58.5
Oeu053742.1 Olea europaea HOM05D006340 ORTHO05D007568 3.3e-71 273.9 660 57.4
EL10Ac4g09463 Beta vulgaris HOM05D006340 ORTHO05D007568 1.6e-70 271.6 653 58.0
Ah.06g195990 Amaranthus hybridus HOM05D006340 ORTHO05D007568 2.0e-68 264.6 657 57.1
Migut.N00937 Erythranthe guttata HOM05D006340 ORTHO05D007568 2.2e-67 261.2 665 51.4
HPP92_005420 Vanilla planifolia HOM05D006340 ORTHO05D007568 2.3e-64 251.1 652 58.0
THA.LOC104816894 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 7.3e-63 246.1 653 46.4
arahy.Tifrunner.gnm1.ann1.Y7QP4L Arachis hypogaea HOM05D006340 ORTHO05D007568 1.2e-62 245.4 645 52.7
Gohir.A11G274100 Gossypium hirsutum HOM05D006340 ORTHO05D007568 1.1e-58 232.3 501 52.9
arahy.Tifrunner.gnm1.ann1.9H9EE5 Arachis hypogaea HOM05D006340 ORTHO05D007568 5.0e-56 223.4 645 42.6
Solyc01g100600.4 Solanum lycopersicum HOM05D006340 ORTHO05D007568 1.1e-55 222.2 506 51.2
Sabra05G0009200 Salix brachista HOM05D006340 ORTHO05D007568 1.2e-54 218.8 206 93.7
Peaxi162Scf01061g00014 Petunia axillaris HOM05D006340 ORTHO05D007568 2.8e-54 217.6 520 34.8
FAN09G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 9.8e-52 209.1 524 50.6
MSTRG.27938 Avicennia marina HOM05D006340 ORTHO05D007568 6.0e-49 199.9 357 38.4
SGA_v2.0_scaffold5G02892 Striga asiatica HOM05D006340 ORTHO05D007568 2.5e-47 194.5 658 41.8
Sc16g0009070 Simmondsia chinensis HOM05D006340 ORTHO05D007568 1.0e-40 172.6 490 50.0
PSO541G0443 Papaver somniferum HOM05D006340 ORTHO05D007568 3.6e-38 164.1 257 42.8
SalBow3G0642 Salvia bowleyana HOM05D006340 ORTHO05D007568 1.1e-31 142.5 328 35.7
Dinv24463 Davidia involucrata HOM05D006340 ORTHO05D007568 1.5e-31 142.1 177 87.0
MSTRG.27937 Avicennia marina HOM05D006340 ORTHO05D007568 9.6e-31 139.4 199 73.4
CDE08G0055 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 1.6e-30 138.7 481 43.9
CDE02G0367 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 2.6e-28 131.3 631 36.1
FAN05G4753 Fragaria x ananassa HOM05D006340 ORTHO05D007568 6.7e-24 116.7 458 46.1
unitig_52.g17414 Utricularia gibba HOM05D006340 ORTHO05D007568 4.0e-21 107.5 234 46.6
THA.LOC104824492 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 5.3e-21 107.1 64 73.4
SMO115G0101 Selaginella moellendorffii HOM05D006340 ORTHO05D007568 1.9e-18 98.6 681 32.3
MBI18_g03639_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 4.5e-12 77.4 73 56.2
AagrBONN_evm.TU.Sc2ySwM_117.2646 Anthoceros agrestis HOM05D001137 ORTHO05D007568 4.2e-10 70.9 194 27.3
ECA169G0006 Erigeron canadensis HOM05D006340 ORTHO05D007568 1.9e-07 62.0 53 58.5
Mapoly0004s0054 Marchantia polymorpha HOM05D001137 ORTHO05D001967 5.7e-07 60.5 43 58.1
SMO201G0046 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 5.7e-07 60.5 46 52.2
SMO022G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 7.4e-07 60.1 48 52.1
SMO228G0070 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 7.4e-07 60.1 46 52.2
AagrBONN_evm.TU.Sc2ySwM_23.4 Anthoceros agrestis HOM05D001137 ORTHO05D007568 1.3e-06 59.3 181 26.0
CBR_g42082 Chara braunii HOM05D003320 ORTHO05D003941 1.3e-06 59.3 47 51.1
Mapoly0031s0090 Marchantia polymorpha HOM05D003320 ORTHO05D003941 1.3e-06 59.3 47 51.1
SMO125G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.3e-06 59.3 46 52.2
SMO199G0080 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 1.3e-06 59.3 46 52.2
SMO274G0045 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.3e-06 59.3 46 52.2
PSO017G6858 Papaver somniferum HOM05D003320 ORTHO05D003941 2.1e-06 58.5 46 47.8
PSO478G2958 Papaver somniferum HOM05D003320 ORTHO05D003941 2.1e-06 58.5 46 47.8
MBI16_g10850_MAGBIO Magnolia biondii HOM05D003320 ORTHO05D003941 2.8e-06 58.2 46 52.2
Migut.L00877 Erythranthe guttata HOM05D003320 ORTHO05D003941 4.8e-06 57.4 46 52.2
SMO077G0003 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 4.8e-06 57.4 46 50.0
SMO360G0028 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 4.8e-06 57.4 46 47.8
HanXRQChr16g0502481 Helianthus annuus HOM05D003320 ORTHO05D003941 6.3e-06 57.0 48 45.8
Lsat_1_v5_gn_4_110741 Lactuca sativa HOM05D003320 ORTHO05D003941 6.3e-06 57.0 47 46.8
Psat4g047520 Pisum sativum HOM05D003320 ORTHO05D003941 6.3e-06 57.0 46 52.2
AagrBONN_evm.TU.Sc2ySwM_117.209 Anthoceros agrestis HOM05D003320 ORTHO05D003941 8.2e-06 56.6 46 52.2
BcaB05g24833 Brassica carinata HOM05D003320 ORTHO05D003941 8.2e-06 56.6 49 42.9
Migut.D01756 Erythranthe guttata HOM05D003320 ORTHO05D003941 8.2e-06 56.6 46 50.0
TWI56G1154 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 8.2e-06 56.6 51 51.0


User provided reference genes

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