Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 1.2e-226 789.6 458 100.0
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 2.0e-184 649.4 515 77.7
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 3.7e-146 522.3 373 74.5
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 4.1e-145 518.8 415 67.0
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 4.1e-145 518.8 334 79.9
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 9.1e-145 517.7 334 79.6
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 3.5e-144 515.8 405 67.7
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 3.5e-144 515.8 336 80.4
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 1.0e-143 514.2 336 80.7
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 1.9e-142 510.0 339 77.6
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 1.2e-141 507.3 365 73.4
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 1.6e-141 506.9 365 73.2
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 2.8e-141 506.1 370 73.2
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 4.7e-141 505.4 342 76.0
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 6.1e-141 505.0 370 72.2
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 1.4e-140 503.8 365 72.6
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 1.4e-140 503.8 340 76.5
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 2.3e-140 503.1 374 71.4
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 3.0e-140 502.7 341 77.1
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 4.0e-140 502.3 340 76.2
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 5.2e-140 501.9 340 76.8
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 8.8e-140 501.1 353 73.1
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 2.6e-139 499.6 372 71.2
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 3.4e-139 499.2 370 72.2
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 3.4e-139 499.2 371 71.4
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 9.8e-139 497.7 362 72.1
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 9.8e-139 497.7 347 75.2
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 1.7e-138 496.9 372 70.4
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 2.2e-138 496.5 372 70.4
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 2.8e-138 496.1 365 74.0
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 2.8e-138 496.1 339 75.2
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 4.9e-138 495.4 365 71.5
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 4.9e-138 495.4 353 73.9
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 6.3e-138 495.0 363 72.7
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 1.4e-137 493.8 376 70.2
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.4e-137 493.8 338 75.1
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 1.4e-137 493.8 369 73.2
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 1.8e-137 493.4 376 70.2
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 2.4e-137 493.0 366 71.3
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 3.1e-137 492.7 362 72.4
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 5.4e-137 491.9 351 72.1
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 1.6e-136 490.3 359 70.8
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 1.6e-136 490.3 361 74.0
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 2.0e-136 490.0 376 69.7
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 3.5e-136 489.2 362 71.5
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 1.0e-135 487.6 337 74.5
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 1.0e-135 487.6 297 81.8
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 1.7e-135 486.9 295 84.4
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 1.7e-135 486.9 339 74.3
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 1.7e-135 486.9 359 69.4
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 2.3e-135 486.5 337 73.3
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 2.3e-135 486.5 350 70.9
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 5.0e-135 485.3 360 70.0
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 6.6e-135 485.0 351 70.1
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 2.5e-134 483.0 384 67.7
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 2.1e-133 479.9 310 78.4
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 6.1e-133 478.4 416 63.0
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.8e-132 476.9 360 68.1
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 2.3e-132 476.5 359 68.0
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 3.0e-132 476.1 295 79.7
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 1.5e-131 473.8 344 73.0
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 7.5e-131 471.5 366 66.7
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 4.9e-130 468.8 299 79.3
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 1.8e-129 466.8 385 65.5
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 7.0e-129 464.9 328 72.3
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 9.2e-129 464.5 354 68.4
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 9.2e-129 464.5 310 77.7
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 3.5e-128 462.6 378 65.6
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 7.8e-128 461.5 418 61.0
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 2.3e-127 459.9 279 82.4
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 5.0e-127 458.8 361 68.1
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 8.6e-127 458.0 346 70.2
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 3.3e-126 456.1 374 66.3
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 4.3e-126 455.7 345 69.0
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 5.6e-126 455.3 340 68.5
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 2.8e-125 453.0 374 65.2
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 6.2e-125 451.8 280 81.8
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 4.0e-124 449.1 357 66.4
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 1.2e-123 447.6 339 68.7
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 1.5e-123 447.2 303 77.2
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 3.7e-122 442.6 363 65.6
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 6.4e-122 441.8 521 51.2
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 3.0e-119 433.0 363 63.1
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 1.5e-118 430.6 267 81.6
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 3.2e-113 412.9 305 70.8
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.1e-110 404.4 401 55.4
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.1e-110 404.4 334 66.8
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 3.6e-109 399.4 438 53.7
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 5.2e-108 395.6 245 80.0
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 2.9e-106 389.8 373 59.2
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 4.9e-106 389.0 365 57.0
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 3.0e-103 379.8 292 69.2
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 1.1e-102 377.9 317 62.1
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 7.3e-102 375.2 369 58.3
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 1.6e-101 374.0 350 58.3
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 1.7e-98 364.0 402 52.2
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 1.2e-96 357.8 317 62.1
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 6.0e-96 355.5 313 63.6
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 9.3e-89 331.6 267 65.9
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 1.6e-88 330.9 306 60.8
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 8.7e-87 325.1 258 70.2
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 2.5e-86 323.6 260 67.7
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 1.7e-82 310.8 370 50.0
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 4.9e-82 309.3 318 48.7
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 1.3e-79 301.2 203 74.9
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 6.7e-79 298.9 283 58.3
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 3.7e-77 293.1 293 57.0
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 2.7e-72 276.9 158 83.5
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 1.5e-67 261.2 158 78.5
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 8.8e-63 245.4 149 81.2
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 5.7e-54 216.1 215 59.1
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 9.7e-54 215.3 226 54.9
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 1.2e-40 171.8 141 64.5
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 8.8e-31 139.0 142 57.7
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 2.0e-27 127.9 108 63.0
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 1.0e-26 125.6 115 58.3
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 5.0e-26 123.2 124 54.8
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 2.6e-22 110.9 94 60.6
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 5.0e-18 96.7 61 75.4
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 4.3e-17 93.6 255 29.4
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 3.4e-14 84.0 85 52.9
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 6.4e-13 79.7 156 44.9
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 3.5e-11 73.9 43 81.4
Pp3s42_60 Physcomitrium patens HOM05D000182 ORTHO05D011688 1.2e-08 65.5 287 24.7
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 2.6e-06 57.8 77 45.5
QL06p034720 Quercus lobata HOM05D000028 ORTHO05D000701 2.6e-06 57.8 273 25.3


User provided reference genes

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