Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 0.0e+00 1333.2 755 100.0
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 0.0e+00 1101.7 760 86.4
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 6.5e-257 891.0 764 72.5
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 4.2e-256 888.3 765 73.6
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 7.4e-184 648.3 770 56.2
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 2.8e-183 646.4 773 57.2
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 1.0e-153 548.1 787 51.5
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 9.1e-150 535.0 808 51.4
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 5.9e-149 532.3 782 51.7
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 2.5e-147 526.9 808 51.1
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 2.1e-146 523.9 789 51.3
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.1e-139 501.5 748 50.5
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 4.7e-138 496.1 738 50.7
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 7.5e-136 488.8 395 73.9
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 3.7e-135 486.5 792 49.9
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.0e-133 480.7 738 49.9
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 2.8e-130 470.3 794 49.4
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.0e-128 464.2 780 49.4
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 1.2e-125 454.9 797 49.7
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 5.0e-124 449.5 789 47.8
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.5e-123 448.0 800 48.1
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 2.8e-122 443.7 783 46.1
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 4.0e-121 439.9 798 45.2
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.4e-118 431.4 770 45.1
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 6.6e-116 422.5 797 44.4
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 8.6e-116 422.2 707 46.8
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.1e-115 421.8 590 52.2
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 2.5e-115 420.6 796 46.4
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 1.2e-114 418.3 796 46.2
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 3.6e-114 416.8 806 46.0
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 6.2e-114 416.0 768 46.2
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 5.2e-113 412.9 701 46.8
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.5e-112 411.4 805 47.1
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.6e-112 410.6 707 46.1
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 8.3e-111 405.6 793 43.5
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 9.2e-110 402.1 790 45.6
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 3.5e-109 400.2 794 45.1
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 3.5e-109 400.2 808 44.8
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.3e-108 398.3 780 43.6
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 6.6e-108 396.0 813 46.4
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.5e-107 394.8 793 44.5
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.5e-107 394.8 793 44.5
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.6e-106 391.3 794 45.1
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 3.6e-106 390.2 793 44.1
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 3.1e-105 387.1 806 45.7
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 6.8e-105 386.0 805 44.0
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 3.8e-103 380.2 815 43.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 6.4e-103 379.4 615 49.8
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.1e-102 378.6 729 43.5
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.4e-102 378.3 708 45.5
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 2.3e-100 370.9 807 41.4
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 5.1e-100 369.8 778 43.2
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.5e-99 368.2 796 41.5
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.1e-97 362.1 679 47.3
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 5.2e-97 359.8 773 43.7
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.6e-96 357.5 711 45.3
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 2.6e-96 357.5 799 42.1
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 1.7e-95 354.8 690 45.7
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.9e-94 351.3 720 45.4
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 3.0e-92 344.0 794 42.4
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 4.3e-91 340.1 667 46.5
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 9.6e-91 339.0 785 40.6
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 4.8e-90 336.7 680 45.6
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 4.8e-90 336.7 703 40.5
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 2.4e-86 324.3 800 38.0
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 9.3e-86 322.4 768 40.9
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 2.1e-85 321.2 788 42.3
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 3.5e-85 320.5 679 43.7
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 6.0e-85 319.7 788 38.7
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.3e-84 318.5 689 40.9
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 1.1e-83 315.5 686 42.4
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 7.4e-83 312.8 788 41.9
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.4e-81 308.5 784 42.3
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.8e-81 308.1 694 45.7
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 6.9e-81 306.2 753 41.6
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.2e-80 305.4 710 39.6
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 1.4e-78 298.5 707 38.6
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 2.4e-78 297.7 677 44.2
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 3.2e-78 297.4 693 41.1
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 5.5e-78 296.6 737 40.4
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.0e-76 292.4 756 38.8
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.8e-76 291.6 750 38.3
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 8.7e-76 289.3 781 39.8
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 1.9e-75 288.1 671 38.9
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 4.3e-75 287.0 824 37.5
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 3.7e-74 283.9 460 47.2
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 4.5e-72 276.9 690 39.1
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.7e-71 275.0 683 37.5
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 6.5e-71 273.1 722 37.4
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 1.4e-70 271.9 628 39.3
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.6e-69 268.5 755 36.4
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.1e-69 268.1 730 39.9
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.0e-68 265.8 784 39.2
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.0e-68 264.2 729 37.2
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 3.9e-68 263.8 768 36.8
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 7.4e-67 259.6 775 37.3
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 7.4e-67 259.6 822 36.7
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 4.8e-66 256.9 733 39.7
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.4e-65 255.4 769 35.4
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 2.4e-65 254.6 718 38.0
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 5.3e-65 253.4 723 36.7
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 3.4e-64 250.8 754 38.2
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.0e-63 249.2 256 59.8
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 2.9e-63 247.7 794 35.4
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.9e-62 245.0 726 37.5
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 3.2e-62 244.2 697 38.2
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 5.5e-62 243.4 778 36.4
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.1e-61 241.5 634 39.0
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.8e-60 238.4 637 37.7
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 2.3e-60 238.0 667 36.6
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 8.8e-60 236.1 805 35.8
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 7.4e-59 233.0 706 35.3
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 3.7e-58 230.7 703 35.1
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 6.3e-58 229.9 794 35.9
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 8.2e-58 229.6 745 37.6
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 4.5e-56 223.8 701 34.7
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 5.9e-56 223.4 540 38.1
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 3.8e-55 220.7 754 37.0
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 6.5e-55 219.9 725 35.6
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 6.5e-55 219.9 757 35.5
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 1.9e-54 218.4 751 34.4
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 4.2e-54 217.2 690 39.0
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 4.2e-54 217.2 495 44.8
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 2.0e-51 208.4 134 79.1
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 7.4e-51 206.5 580 37.4
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 7.4e-51 206.5 737 34.5
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 6.3e-50 203.4 584 37.0
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 7.0e-49 199.9 689 33.7
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 3.8e-47 194.1 429 47.6
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.2e-46 191.0 720 32.8
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 4.2e-46 190.7 438 40.9
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.6e-45 187.6 676 33.0
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 8.8e-44 183.0 589 34.8
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.5e-43 182.2 287 46.7
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.0e-43 181.8 591 37.2
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 9.7e-43 179.5 722 32.4
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.4e-41 175.6 646 33.9
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.8e-41 175.3 529 34.8
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 5.9e-40 170.2 574 35.0
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 7.7e-40 169.9 769 31.1
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 2.9e-39 167.9 362 41.4
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 3.8e-39 167.5 715 31.2
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 5.5e-38 163.7 455 37.8
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.6e-35 154.8 207 50.7
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 7.5e-35 153.3 459 40.3
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.2e-29 136.0 571 31.2
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 8.8e-28 129.8 448 35.5
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.2e-27 129.4 171 50.3
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 3.7e-26 124.4 572 30.4
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 3.7e-26 124.4 572 30.4
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 5.4e-25 120.6 124 60.5
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.6e-24 119.0 561 31.7
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 1.1e-22 112.8 510 33.7
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 6.1e-21 107.1 576 29.3
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.8e-20 105.5 143 52.4
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 9.8e-19 99.8 549 31.7
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.8e-18 98.2 219 37.4
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 7.0e-17 93.6 580 28.4
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.3e-15 89.4 299 35.8
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.3e-15 88.6 245 33.9
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 6.1e-13 80.5 112 47.3
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 3.1e-12 78.2 116 47.4
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.2e-11 76.3 305 32.1
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 1.2e-11 76.3 110 50.9
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 4.4e-11 74.3 352 29.8
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 5.8e-11 73.9 390 27.9
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 9.8e-11 73.2 142 46.5
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 2.2e-10 72.0 109 49.5
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 3.7e-10 71.2 147 44.2
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 8.3e-10 70.1 590 30.0
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 4.1e-09 67.8 61 63.9
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 7.0e-09 67.0 83 57.8
Psat3g059240 Pisum sativum HOM05D003795 ORTHO05D004308 3.5e-08 64.7 97 50.5
C03p10570 Brassica napus HOM05D011073 ORTHO05D013800 5.0e-07 60.8 130 46.9
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.5e-06 59.3 253 28.9
C03p77490 Brassica napus HOM05D011073 ORTHO05D013800 2.5e-06 58.5 126 47.6
SEGI_22138 Sequoiadendron giganteum HOM05D003795 ORTHO05D004308 7.3e-06 57.0 540 27.8


User provided reference genes

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