Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G141400 Populus trichocarpa HOM05D005770 ORTHO05D006702 2.2e-181 639.0 377 100.0
Potri.015G144100 Populus trichocarpa HOM05D005770 ORTHO05D006702 2.5e-95 353.2 281 65.8
Sabra15G0153800 Salix brachista HOM05D005770 ORTHO05D006702 4.2e-95 352.4 281 65.5
QL09p014180 Quercus lobata HOM05D005770 ORTHO05D006702 2.0e-73 280.4 294 53.4
SHI13783 Sapria himalayana HOM05D005770 ORTHO05D006702 6.5e-72 275.4 290 50.3
Cfa021839 Carpinus fangiana HOM05D005770 ORTHO05D006702 8.5e-72 275.0 290 52.8
TWI23G0309 Tripterygium wilfordii HOM05D005770 ORTHO05D006702 1.1e-71 274.6 293 53.6
CiPaw.03G106500 Carya illinoinensis HOM05D005770 ORTHO05D006702 2.5e-71 273.5 293 52.2
Duzib205G0262 Durio zibethinus HOM05D005770 ORTHO05D006702 2.1e-70 270.4 293 50.5
TWI39G1137 Tripterygium wilfordii HOM05D005770 ORTHO05D006702 3.0e-69 266.5 293 50.9
Cpa.g.sc107.54 Carica papaya HOM05D005770 ORTHO05D006702 1.1e-68 264.6 291 49.1
Prupe.2G294500 Prunus persica HOM05D005770 ORTHO05D006702 2.6e-68 263.5 293 49.1
Thecc.03G176800 Theobroma cacao HOM05D005770 ORTHO05D006702 2.2e-67 260.4 295 49.2
Ciclev10004849m.g Citrus clementina HOM05D005770 ORTHO05D006702 4.1e-66 256.1 291 49.1
Medtr1g100593 Medicago truncatula HOM05D005770 ORTHO05D006702 4.1e-66 256.1 378 41.8
Manes.06G147400 Manihot esculenta HOM05D005770 ORTHO05D006702 7.0e-66 255.4 287 50.9
MD01G1201100 Malus domestica HOM05D005770 ORTHO05D006702 1.6e-65 254.2 294 49.3
Duzib084G0816 Durio zibethinus HOM05D005770 ORTHO05D006702 8.5e-64 248.4 295 47.1
Eucgr.A02787 Eucalyptus grandis HOM05D005770 ORTHO05D006702 4.7e-62 242.7 293 47.8
Glyma.10G235900 Glycine max HOM05D005770 ORTHO05D006702 1.0e-61 241.5 292 45.5
Glyma.20G158600 Glycine max HOM05D005770 ORTHO05D006702 1.0e-61 241.5 288 46.9
arahy.Tifrunner.gnm1.ann1.N888CD Arachis hypogaea HOM05D005770 ORTHO05D006702 1.8e-61 240.7 291 47.1
Hma1.2p1_1438F.1_g283370 Hydrangea macrophylla HOM05D005770 ORTHO05D006702 1.2e-60 238.0 286 48.3
CANSAT21G1021 Cannabis sativa HOM05D005770 ORTHO05D006702 1.5e-60 237.7 300 45.7
Lalb_Chr02g0141051 Lupinus albus HOM05D005770 ORTHO05D006702 3.3e-60 236.5 294 46.9
FAN01G0434 Fragaria x ananassa HOM05D005770 ORTHO05D006702 7.5e-60 235.3 292 48.3
RcHm_v2.0_Chr1g0377341 Rosa chinensis HOM05D005770 ORTHO05D006702 1.7e-59 234.2 290 45.9
FvH4_7g29500 Fragaria vesca HOM05D005770 ORTHO05D006702 3.7e-59 233.0 292 47.6
FAN06G3626 Fragaria x ananassa HOM05D005770 ORTHO05D006702 3.7e-59 233.0 293 47.8
CiPaw.04G071100 Carya illinoinensis HOM05D005770 ORTHO05D006702 4.8e-59 232.6 282 48.6
FAN03G2582 Fragaria x ananassa HOM05D005770 ORTHO05D006702 8.2e-59 231.9 292 47.9
Psat6g198600 Pisum sativum HOM05D005770 ORTHO05D006702 8.2e-59 231.9 288 45.1
THA.LOC104822701 Tarenaya hassleriana HOM05D005770 ORTHO05D006702 3.1e-58 229.9 290 45.9
TPR.G14338 Trifolium pratense HOM05D005770 ORTHO05D006702 3.1e-58 229.9 293 45.7
Actinidia32859 Actinidia chinensis HOM05D005770 ORTHO05D006702 4.1e-58 229.6 301 45.8
vmacro06680 Vaccinium macrocarpon HOM05D005770 ORTHO05D006702 4.1e-58 229.6 293 46.1
FAN06G3908 Fragaria x ananassa HOM05D005770 ORTHO05D006702 5.3e-58 229.2 292 47.3
PGR004G2488 Punica granatum HOM05D005770 ORTHO05D006702 7.0e-58 228.8 285 45.3
Haze_13705 Corylus avellana HOM05D005770 ORTHO05D006702 2.0e-57 227.3 211 56.9
FAN03G2589 Fragaria x ananassa HOM05D005770 ORTHO05D006702 2.7e-57 226.9 292 46.9
THA.LOC104815678 Tarenaya hassleriana HOM05D005770 ORTHO05D006702 2.7e-57 226.9 284 45.8
Nitab4.5_0005729g0100 Nicotiana tabacum HOM05D000001 ORTHO05D006702 5.9e-57 225.7 304 44.1
Dinv35212 Davidia involucrata HOM05D001888 ORTHO05D001842 1.3e-56 224.6 229 52.0
Nitab4.5_0005441g0030 Nicotiana tabacum HOM05D005770 ORTHO05D006702 1.3e-56 224.6 304 44.1
CSS0038653 Camellia sinensis var. sinensis HOM05D005770 ORTHO05D006702 1.7e-56 224.2 304 43.8
CSS0016459 Camellia sinensis var. sinensis HOM05D005770 ORTHO05D006702 2.2e-56 223.8 304 43.8
COL.COLO4_14311 Corchorus olitorius HOM05D005770 ORTHO05D006702 2.9e-56 223.4 245 49.4
Sc13g0008700 Simmondsia chinensis HOM05D005770 ORTHO05D006702 3.8e-56 223.0 288 46.9
Phvul.007G069900 Phaseolus vulgaris HOM05D005770 ORTHO05D006702 1.5e-55 221.1 283 44.9
PGSC0003DMG400022513 Solanum tuberosum HOM05D005770 ORTHO05D006702 1.5e-55 221.1 298 43.6
Migut.F00337 Erythranthe guttata HOM05D005770 ORTHO05D006702 1.9e-55 220.7 290 42.4
Solyc01g097730.4 Solanum lycopersicum HOM05D005770 ORTHO05D006702 1.9e-55 220.7 298 43.6
Sopen01g041340 Solanum pennellii HOM05D005770 ORTHO05D006702 1.9e-55 220.7 298 43.6
Aa31LG10G580 Aethionema arabicum HOM05D005770 ORTHO05D006702 2.5e-55 220.3 291 42.6
Peaxi162Scf01049g00009 Petunia axillaris HOM05D005770 ORTHO05D006702 2.5e-55 220.3 304 43.4
BcaC08g43641 Brassica carinata HOM05D005770 ORTHO05D006702 3.2e-55 219.9 271 45.8
C06p10600 Brassica napus HOM05D005770 ORTHO05D006702 3.2e-55 219.9 271 45.8
BolC6t36140H Brassica oleracea HOM05D005770 ORTHO05D006702 3.2e-55 219.9 271 45.8
AT1G55630 Arabidopsis thaliana HOM05D005770 ORTHO05D006702 9.4e-55 218.4 284 46.1
CAN.G134.133 Capsicum annuum HOM05D005770 ORTHO05D006702 9.4e-55 218.4 304 44.1
Carub.0001s4415 Capsella rubella HOM05D005770 ORTHO05D006702 4.7e-54 216.1 284 45.4
AL1G63710 Arabidopsis lyrata HOM05D005770 ORTHO05D006702 6.1e-54 215.7 284 45.4
Lj8C24G5 Lonicera japonica HOM05D005770 ORTHO05D006702 8.0e-54 215.3 233 50.2
A06p00090 Brassica napus HOM05D005770 ORTHO05D006702 1.8e-53 214.2 270 44.8
BraA06t23224Z Brassica rapa HOM05D005770 ORTHO05D006702 3.0e-53 213.4 270 44.4
Sp1g41250 Schrenkiella parvula HOM05D005770 ORTHO05D006702 5.2e-53 212.6 287 43.2
MBI17_g21973_MAGBIO Magnolia biondii HOM05D005770 ORTHO05D006702 6.8e-53 212.2 237 49.4
MSTRG.27102 Avicennia marina HOM05D005770 ORTHO05D006702 1.2e-52 211.5 301 41.9
Gohir.D12G259000 Gossypium hirsutum HOM05D005770 ORTHO05D006702 1.2e-52 211.5 275 44.0
Lj5g0019820 Lotus japonicus HOM05D005770 ORTHO05D006702 2.0e-52 210.7 244 48.4
Lalb_Chr01g0009311 Lupinus albus HOM05D005770 ORTHO05D006702 2.6e-52 210.3 288 45.1
AL5G42240 Arabidopsis lyrata HOM05D005770 ORTHO05D006702 3.4e-52 209.9 278 43.2
BcaB07g33196 Brassica carinata HOM05D005770 ORTHO05D006702 3.4e-52 209.9 280 43.6
Thhalv10011441m.g Eutrema salsugineum HOM05D005770 ORTHO05D006702 3.4e-52 209.9 288 43.8
Gohir.A12G257700 Gossypium hirsutum HOM05D005770 ORTHO05D006702 4.4e-52 209.5 277 43.3
Gorai.008G277400 Gossypium raimondii HOM05D005770 ORTHO05D006702 5.7e-52 209.1 275 43.6
SGA_v2.0_scaffold60G21044 Striga asiatica HOM05D005770 ORTHO05D006702 9.8e-52 208.4 291 43.3
TAR367G0010 Trochodendron aralioides HOM05D005770 ORTHO05D006702 9.8e-52 208.4 307 42.0
CsaV3_3G017100 Cucumis sativus L. HOM05D005770 ORTHO05D006702 1.7e-51 207.6 282 41.8
Oeu056257.1 Olea europaea HOM05D005770 ORTHO05D006702 2.8e-51 206.8 211 52.6
AT3G60050 Arabidopsis thaliana HOM05D005770 ORTHO05D006702 3.7e-51 206.5 277 43.7
GSVIVG01028975001 Vitis vinifera HOM05D005770 ORTHO05D006702 3.7e-51 206.5 321 39.6
arahy.Tifrunner.gnm1.ann1.WS47X7 Arachis hypogaea HOM05D005770 ORTHO05D006702 4.8e-51 206.1 292 42.8
arahy.Tifrunner.gnm1.ann1.FD0XM2 Arachis hypogaea HOM05D005770 ORTHO05D006702 8.3e-51 205.3 292 42.8
Cc04_g11130 Coffea canephora HOM05D005770 ORTHO05D006702 1.1e-50 204.9 212 50.9
Thhalv10005935m.g Eutrema salsugineum HOM05D005770 ORTHO05D006702 2.4e-50 203.8 278 43.2
CARHR045330 Cardamine hirsuta HOM05D005770 ORTHO05D006702 9.1e-50 201.8 276 43.1
AUR62021190 Chenopodium quinoa HOM05D005770 ORTHO05D006702 2.0e-49 200.7 296 40.5
Ca_08604_v3 Cicer arietinum L. HOM05D005770 ORTHO05D006702 5.9e-49 199.1 323 39.9
DCAR_010313 Daucus carota HOM05D005770 ORTHO05D006702 1.3e-48 198.0 214 50.5
DCAR_031566 Daucus carota HOM05D005770 ORTHO05D006702 1.3e-48 198.0 277 43.7
Lj2g0008451 Lotus japonicus HOM05D005770 ORTHO05D006702 2.9e-48 196.8 275 44.0
BcaB02g08196 Brassica carinata HOM05D005770 ORTHO05D006702 8.5e-48 195.3 265 43.4
Sp5g03150 Schrenkiella parvula HOM05D005770 ORTHO05D006702 1.1e-47 194.9 276 40.9
Sed0026879 Sechium edule HOM05D005770 ORTHO05D006702 1.1e-47 194.9 260 44.2
VMungo0720G2001 Vigna mungo HOM05D005770 ORTHO05D006702 2.5e-47 193.7 217 49.3
TAR629G1232 Trochodendron aralioides HOM05D005770 ORTHO05D006702 1.2e-46 191.4 212 48.1
CARHR170360 Cardamine hirsuta HOM05D005770 ORTHO05D006702 1.6e-46 191.0 261 43.3
TPR.G10755 Trifolium pratense HOM05D005770 ORTHO05D006702 1.6e-46 191.0 338 38.2
ECA232G1051 Erigeron canadensis HOM05D005770 ORTHO05D006702 8.0e-46 188.7 311 37.3
Ca_10769_v3 Cicer arietinum L. HOM05D005770 ORTHO05D006702 1.0e-45 188.3 201 51.2
Aqoxy2G04147 Aquilegia oxysepala HOM05D005770 ORTHO05D006702 2.3e-45 187.2 231 45.5
Aa31LG2G1100 Aethionema arabicum HOM05D005770 ORTHO05D006702 4.0e-45 186.4 290 39.3
C04p32660 Brassica napus HOM05D005770 ORTHO05D006702 2.2e-43 180.6 264 41.7
BcaC02g10107 Brassica carinata HOM05D005770 ORTHO05D006702 2.8e-43 180.3 264 41.7
BolC4t24834H Brassica oleracea HOM05D005770 ORTHO05D006702 2.8e-43 180.3 264 41.7
EL10Ac3g05641 Beta vulgaris HOM05D005770 ORTHO05D006702 8.3e-43 178.7 269 39.8
Ah.02g115560 Amaranthus hybridus HOM05D005770 ORTHO05D006702 2.4e-42 177.2 270 41.1
Medtr6g045263 Medicago truncatula HOM05D005770 ORTHO05D006702 3.1e-42 176.8 332 37.7
Aqoxy2G04148 Aquilegia oxysepala HOM05D005770 ORTHO05D006702 1.6e-41 174.5 236 42.8
EL10Ac3g05616 Beta vulgaris HOM05D005770 ORTHO05D006702 5.9e-41 172.6 270 40.7
Sed0008807 Sechium edule HOM05D005770 ORTHO05D006702 3.8e-40 169.9 211 45.5
BraA04t15913Z Brassica rapa HOM05D005770 ORTHO05D006702 8.6e-40 168.7 263 39.5
A04p01900 Brassica napus HOM05D005770 ORTHO05D006702 1.5e-39 167.9 265 40.8
SEGI_17014 Sequoiadendron giganteum HOM05D005770 ORTHO05D006702 1.9e-39 167.5 294 37.8
HanXRQChr09g0253591 Helianthus annuus HOM05D005770 ORTHO05D006702 4.3e-39 166.4 236 42.8
ATR0594G060 Amborella trichopoda HOM05D005770 ORTHO05D006702 7.3e-39 165.6 238 39.5
Lsat_1_v5_gn_9_55961 Lactuca sativa HOM05D005770 ORTHO05D006702 3.6e-38 163.3 283 37.1
Os10g0506000 Oryza sativa ssp. japonica HOM05D005770 ORTHO05D006702 1.0e-37 161.8 214 40.2
HPP92_014751 Vanilla planifolia HOM05D005770 ORTHO05D006702 4.0e-37 159.8 207 42.0
ScUNg0000600 Simmondsia chinensis HOM05D005770 ORTHO05D006702 4.9e-35 152.9 145 55.9
Dinv28440 Davidia involucrata HOM05D005770 ORTHO05D006702 8.3e-35 152.1 122 61.5
CDE02G0404 Ceratophyllum demersum HOM05D005770 ORTHO05D006702 5.4e-34 149.4 221 39.8
Zm00001eb044070 Zea mays HOM05D005770 ORTHO05D006702 1.6e-33 147.9 214 38.8
SEGI_37272 Sequoiadendron giganteum HOM05D005770 ORTHO05D006702 2.7e-33 147.1 209 40.2
Atru.chr1.457 Acer truncatum HOM05D005770 ORTHO05D006702 1.0e-32 145.2 117 61.5
Carub.0005s2679 Capsella rubella HOM05D005770 ORTHO05D006702 2.1e-30 137.5 202 40.1
FAN10G4138 Fragaria x ananassa HOM05D005770 ORTHO05D006702 2.3e-29 134.0 263 36.5
PSO210G6232 Papaver somniferum HOM05D005770 ORTHO05D006702 1.5e-28 131.3 301 32.9
PSO832G4086 Papaver somniferum HOM05D005770 ORTHO05D006702 5.8e-28 129.4 301 33.2
Prupe.2G083800 Prunus persica HOM05D005770 ORTHO05D006702 4.1e-18 96.7 290 30.7
PSO832G0287 Papaver somniferum HOM05D005770 ORTHO05D006702 7.1e-18 95.9 199 34.2
PSO210G3347 Papaver somniferum HOM05D005770 ORTHO05D006702 1.2e-17 95.1 199 34.2
Actinidia34114 Actinidia chinensis HOM05D005770 ORTHO05D006702 4.0e-13 80.1 92 48.9
TPR.G10744 Trifolium pratense HOM05D005770 ORTHO05D006702 1.9e-10 71.2 91 46.2
Lsat_1_v5_gn_4_103720 Lactuca sativa HOM05D006749 ORTHO05D008352 7.3e-07 59.3 216 25.9
Potri.001G180000 Populus trichocarpa HOM05D006749 ORTHO05D008352 1.2e-06 58.5 221 26.7
SGA_v2.0_scaffold8G04573 Striga asiatica HOM05D000424 ORTHO05D002854 2.8e-06 57.4 195 24.1
HanXRQChr09g0275241 Helianthus annuus HOM05D006749 ORTHO05D008352 4.7e-06 56.6 218 25.7
Nitab4.5_0002438g0020 Nicotiana tabacum HOM05D006749 ORTHO05D008352 6.2e-06 56.2 235 25.5
PGR102G0966 Punica granatum HOM05D006749 ORTHO05D008352 8.1e-06 55.8 214 26.2


User provided reference genes

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