Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G140900 Populus trichocarpa HOM05D001293 ORTHO05D019014 4.1e-55 218.0 125 100.0
Thecc.03G176200 Theobroma cacao HOM05D001293 ORTHO05D019014 4.4e-17 91.7 122 41.0
CsaV3_3G017090 Cucumis sativus L. HOM05D001293 ORTHO05D019014 5.8e-17 91.3 112 45.5
ClCG05G008040 Citrullus lanatus HOM05D025135 ORTHO05D019014 3.0e-13 79.0 95 45.3
MELO3C006905.2 Cucumis melo HOM05D025135 ORTHO05D019014 1.2e-09 67.0 71 46.5
MBI18_g09034_MAGBIO Magnolia biondii HOM05D001293 ORTHO05D001143 1.2e-09 67.0 107 40.2
Medtr1g100647 Medicago truncatula HOM05D001293 ORTHO05D001143 1.5e-09 66.6 105 46.7
Medtr8g031370 Medicago truncatula HOM05D001293 ORTHO05D001143 1.5e-09 66.6 117 43.6
Cfa008315 Carpinus fangiana HOM05D001293 ORTHO05D001143 2.0e-09 66.2 104 39.4
EL10Ac5g12774 Beta vulgaris HOM05D001293 ORTHO05D001143 2.6e-09 65.9 104 37.5
Cfa012145 Carpinus fangiana HOM05D001293 ORTHO05D001143 2.6e-09 65.9 104 44.2
Haze_08887 Corylus avellana HOM05D001293 ORTHO05D001143 3.4e-09 65.5 104 37.5
Haze_08890 Corylus avellana HOM05D001293 ORTHO05D001143 3.4e-09 65.5 104 37.5
Glyma.11G025200 Glycine max HOM05D001293 ORTHO05D001143 3.4e-09 65.5 117 41.9
Psat6g199640 Pisum sativum HOM05D001293 ORTHO05D001143 3.4e-09 65.5 105 44.8
Ca_10773_v3 Cicer arietinum L. HOM05D001293 ORTHO05D001143 4.4e-09 65.1 105 44.8
Lalb_Chr06g0161121 Lupinus albus HOM05D001293 ORTHO05D001143 7.5e-09 64.3 116 37.9
TAR636G2976 Trochodendron aralioides HOM05D001293 ORTHO05D001143 7.5e-09 64.3 107 41.1
Hma1.2p1_1943F.1_g308490 Hydrangea macrophylla HOM05D001293 ORTHO05D001143 9.9e-09 63.9 104 37.5
Ca_24561_v3 Cicer arietinum L. HOM05D001293 ORTHO05D001143 1.3e-08 63.5 104 43.3
MD07G1268300 Malus domestica HOM05D025135 ORTHO05D019014 1.3e-08 63.5 93 40.9
Os02g0824500 Oryza sativa ssp. japonica HOM05D001293 ORTHO05D001143 1.7e-08 63.2 107 45.8
unitig_0.g2483 Utricularia gibba HOM05D001293 ORTHO05D001143 1.7e-08 63.2 104 47.1
Eucgr.E00569 Eucalyptus grandis HOM05D001293 ORTHO05D001143 2.2e-08 62.8 107 37.4
Gohir.A12G226800 Gossypium hirsutum HOM05D001293 ORTHO05D001143 2.2e-08 62.8 107 39.3
Dinv38963 Davidia involucrata HOM05D001293 ORTHO05D001143 2.9e-08 62.4 104 46.2
Prupe.2G294000 Prunus persica HOM05D025135 ORTHO05D019014 2.9e-08 62.4 124 32.3
Migut.F00343 Erythranthe guttata HOM05D001293 ORTHO05D001143 3.7e-08 62.0 104 46.2
Glyma.03G013400 Glycine max HOM05D001293 ORTHO05D001143 3.7e-08 62.0 117 39.3
Lj8A25T66 Lonicera japonica HOM05D001293 ORTHO05D001143 3.7e-08 62.0 104 39.4
Zm00001eb427400 Zea mays HOM05D001293 ORTHO05D001143 3.7e-08 62.0 107 45.8
Glyma.20G158200 Glycine max HOM05D001293 ORTHO05D001143 4.9e-08 61.6 104 46.2
Gohir.A08G099500 Gossypium hirsutum HOM05D001293 ORTHO05D001143 4.9e-08 61.6 106 44.3
Gohir.D12G229200 Gossypium hirsutum HOM05D001293 ORTHO05D001143 4.9e-08 61.6 107 38.3
Gorai.008G245400 Gossypium raimondii HOM05D001293 ORTHO05D001143 4.9e-08 61.6 107 38.3
QL08p049449 Quercus lobata HOM05D001293 ORTHO05D001143 4.9e-08 61.6 117 42.7
Rhsim07G0091900 Rhododendron simsii HOM05D001293 ORTHO05D001143 4.9e-08 61.6 104 44.2
MSTRG.13834 Avicennia marina HOM05D001293 ORTHO05D001143 6.4e-08 61.2 116 36.2
Eucgr.A02795 Eucalyptus grandis HOM05D001293 ORTHO05D001143 6.4e-08 61.2 119 36.1
Hma1.2p1_1438F.1_g283380 Hydrangea macrophylla HOM05D001293 ORTHO05D001143 6.4e-08 61.2 109 45.0
Os04g0533300 Oryza sativa ssp. japonica HOM05D001293 ORTHO05D001143 6.4e-08 61.2 107 44.9
TPR.G37804 Trifolium pratense HOM05D001293 ORTHO05D001143 6.4e-08 61.2 117 43.6
MELO3C006904.2 Cucumis melo HOM05D001293 ORTHO05D001143 8.3e-08 60.8 104 46.2
Glyma.10G236300 Glycine max HOM05D001293 ORTHO05D001143 8.3e-08 60.8 104 45.2
Psat3g110560 Pisum sativum HOM05D001293 ORTHO05D001143 8.3e-08 60.8 117 41.0
MSTRG.27117 Avicennia marina HOM05D001293 ORTHO05D001143 1.1e-07 60.5 104 46.2
Duzib205G0129 Durio zibethinus HOM05D001293 ORTHO05D001143 1.1e-07 60.5 104 45.2
Migut.F01121 Erythranthe guttata HOM05D001293 ORTHO05D001143 1.1e-07 60.5 104 44.2
Potri.012G140800 Populus trichocarpa HOM05D001293 ORTHO05D001143 1.1e-07 60.5 103 46.6
VMungo0720G0217 Vigna mungo HOM05D001293 ORTHO05D001143 1.1e-07 60.5 104 45.2
CiPaw.03G106000 Carya illinoinensis HOM05D001293 ORTHO05D001143 1.4e-07 60.1 104 46.2
Solyc10g017540.4 Solanum lycopersicum HOM05D001293 ORTHO05D001143 1.4e-07 60.1 121 36.4
THA.LOC104798926 Tarenaya hassleriana HOM05D001293 ORTHO05D001143 1.4e-07 60.1 104 46.2
Carub.0005s1512 Capsella rubella HOM05D001293 ORTHO05D001143 1.9e-07 59.7 104 46.2
CAN.G78.46 Capsicum annuum HOM05D001293 ORTHO05D001143 1.9e-07 59.7 119 39.5
Ca_07895_v3 Cicer arietinum L. HOM05D001293 ORTHO05D001143 1.9e-07 59.7 114 43.9
ECA233G2773 Erigeron canadensis HOM05D001293 ORTHO05D001143 1.9e-07 59.7 107 37.4
HanXRQChr07g0187071 Helianthus annuus HOM05D001293 ORTHO05D001143 1.9e-07 59.7 107 36.4
MSTRG.92 Avicennia marina HOM05D001293 ORTHO05D001143 2.4e-07 59.3 113 42.5
Manes.06G146800 Manihot esculenta HOM05D001293 ORTHO05D001143 2.4e-07 59.3 104 46.2
Os02g0642200 Oryza sativa ssp. japonica HOM05D001293 ORTHO05D001143 2.4e-07 59.3 120 35.8
PGR042G1643 Punica granatum HOM05D001293 ORTHO05D001143 2.4e-07 59.3 105 44.8
Hund11488 Selenicereus undatus HOM05D001293 ORTHO05D001143 2.4e-07 59.3 104 42.3
CSS0041072 Camellia sinensis var. sinensis HOM05D001293 ORTHO05D001143 3.2e-07 58.9 105 44.8
Nitab4.5_0008050g0060 Nicotiana tabacum HOM05D001293 ORTHO05D001143 3.2e-07 58.9 117 41.0
QL09p014264 Quercus lobata HOM05D001293 ORTHO05D001143 3.2e-07 58.9 103 44.7
QL93p1873_0031 Quercus lobata HOM05D001293 ORTHO05D001143 3.2e-07 58.9 103 44.7
SGA_v2.0_scaffold113G31739 Striga asiatica HOM05D001293 ORTHO05D001143 3.2e-07 58.9 104 44.2
HPP92_026757 Vanilla planifolia HOM05D001293 ORTHO05D001143 3.2e-07 58.9 104 43.3
Eucgr.A02793 Eucalyptus grandis HOM05D001293 ORTHO05D001143 4.1e-07 58.5 123 41.5
MBI17_g42122_MAGBIO Magnolia biondii HOM05D001293 ORTHO05D001143 4.1e-07 58.5 104 43.3
Nitab4.5_0004193g0010 Nicotiana tabacum HOM05D001293 ORTHO05D001143 4.1e-07 58.5 104 44.2
Psat4g202240 Pisum sativum HOM05D001293 ORTHO05D001143 4.1e-07 58.5 117 41.0
PGSC0003DMG400003063 Solanum tuberosum HOM05D001293 ORTHO05D001143 4.1e-07 58.5 107 42.1
vmacro11307 Vaccinium macrocarpon HOM05D001293 ORTHO05D001143 4.1e-07 58.5 104 43.3
CSS0048973 Camellia sinensis var. sinensis HOM05D001293 ORTHO05D001143 5.4e-07 58.2 104 44.2
CiPaw.11G138200 Carya illinoinensis HOM05D001293 ORTHO05D001143 5.4e-07 58.2 116 34.5
Ciclev10023664m.g Citrus clementina HOM05D001293 ORTHO05D001143 5.4e-07 58.2 122 41.0
COL.COLO4_14305 Corchorus olitorius HOM05D001293 ORTHO05D001143 5.4e-07 58.2 104 44.2
Dinv28445 Davidia involucrata HOM05D001293 ORTHO05D001143 5.4e-07 58.2 104 42.3
Gohir.D08G110900 Gossypium hirsutum HOM05D001293 ORTHO05D001143 5.4e-07 58.2 104 44.2
Gorai.004G118800 Gossypium raimondii HOM05D001293 ORTHO05D001143 5.4e-07 58.2 104 44.2
Lalb_Chr02g0141021 Lupinus albus HOM05D001293 ORTHO05D001143 5.4e-07 58.2 104 43.3
Lalb_Chr19g0130871 Lupinus albus HOM05D001293 ORTHO05D001143 5.4e-07 58.2 104 41.3
PGR042G2116 Punica granatum HOM05D001293 ORTHO05D001143 5.4e-07 58.2 104 42.3
Sabra02G0125400 Salix brachista HOM05D001293 ORTHO05D001143 5.4e-07 58.2 117 42.7
Thecc.03G176100 Theobroma cacao HOM05D001293 ORTHO05D001143 5.4e-07 58.2 104 45.2
GSVIVG01026869001 Vitis vinifera HOM05D001293 ORTHO05D001143 5.4e-07 58.2 120 44.2
Aqoxy7G00364 Aquilegia oxysepala HOM05D001293 ORTHO05D001143 7.1e-07 57.8 104 42.3
AUR62004327 Chenopodium quinoa HOM05D001509 ORTHO05D001361 7.1e-07 57.8 104 40.4
DCAR_009365 Daucus carota HOM05D001293 ORTHO05D001143 7.1e-07 57.8 118 43.2
Dinv35211 Davidia involucrata HOM05D001293 ORTHO05D001143 7.1e-07 57.8 104 44.2
Prupe.2G293900 Prunus persica HOM05D001293 ORTHO05D001143 7.1e-07 57.8 104 44.2
THA.LOC104821542 Tarenaya hassleriana HOM05D001293 ORTHO05D001143 7.1e-07 57.8 104 44.2
unitig_26.g10199 Utricularia gibba HOM05D002159 ORTHO05D005625 7.1e-07 57.8 108 45.4
Aa31LG4G17450 Aethionema arabicum HOM05D001293 ORTHO05D001143 9.2e-07 57.4 105 43.8
AL5G28450 Arabidopsis lyrata HOM05D001293 ORTHO05D001143 9.2e-07 57.4 105 44.8
BcaB01g00766 Brassica carinata HOM05D001293 ORTHO05D001143 9.2e-07 57.4 104 44.2
Lsat_1_v5_gn_6_5760 Lactuca sativa HOM05D001293 ORTHO05D001143 9.2e-07 57.4 107 34.6
Lalb_Chr19g0126991 Lupinus albus HOM05D001293 ORTHO05D001143 9.2e-07 57.4 117 41.0
Sc22g0000180 Simmondsia chinensis HOM05D001293 ORTHO05D001143 9.2e-07 57.4 106 43.4
TPR.G6636 Trifolium pratense HOM05D001293 ORTHO05D001143 9.2e-07 57.4 103 42.7
TWI39G1206 Tripterygium wilfordii HOM05D001293 ORTHO05D001143 9.2e-07 57.4 107 44.9
VMungo0251G2272 Vigna mungo HOM05D000678 ORTHO05D002523 9.2e-07 57.4 107 42.1
BcaC02g07057 Brassica carinata HOM05D001293 ORTHO05D001143 1.2e-06 57.0 116 40.5
C04p06740 Brassica napus HOM05D001293 ORTHO05D001143 1.2e-06 57.0 116 40.5
BolC4t22295H Brassica oleracea HOM05D001293 ORTHO05D001143 1.2e-06 57.0 116 40.5
AUR62033341 Chenopodium quinoa HOM05D001293 ORTHO05D001143 1.2e-06 57.0 104 40.4
ClCG09G012980 Citrullus lanatus HOM05D001293 ORTHO05D001143 1.2e-06 57.0 104 44.2
Thhalv10011156m.g Eutrema salsugineum HOM05D001293 ORTHO05D001143 1.2e-06 57.0 104 45.2
Glyma.01G218000 Glycine max HOM05D001293 ORTHO05D001143 1.2e-06 57.0 103 41.7
MBI17_g45843_MAGBIO Magnolia biondii HOM05D001293 ORTHO05D001143 1.2e-06 57.0 104 42.3
Hund27296 Selenicereus undatus HOM05D001293 ORTHO05D001143 1.2e-06 57.0 104 43.3
Duzib068G0884 Durio zibethinus HOM05D001293 ORTHO05D001143 1.6e-06 56.6 117 41.9
Manes.14G026100 Manihot esculenta HOM05D001293 ORTHO05D001143 1.6e-06 56.6 104 46.2
Phvul.007G069500 Phaseolus vulgaris HOM05D001293 ORTHO05D001143 1.6e-06 56.6 104 42.3
SalBow4G0351 Salvia bowleyana HOM05D001293 ORTHO05D001143 1.6e-06 56.6 104 44.2
SalBow4G1466 Salvia bowleyana HOM05D001293 ORTHO05D001143 1.6e-06 56.6 104 44.2
SGA_v2.0_scaffold60G21036 Striga asiatica HOM05D001293 ORTHO05D001143 1.6e-06 56.6 105 44.8
unitig_46.g18785 Utricularia gibba HOM05D001293 ORTHO05D001143 1.6e-06 56.6 104 41.3
BraA06t24965Z Brassica rapa HOM05D001293 ORTHO05D001143 2.1e-06 56.2 104 43.3
CiPaw.04G070800 Carya illinoinensis HOM05D001293 ORTHO05D001143 2.1e-06 56.2 104 44.2
Glyma.05G205900 Glycine max HOM05D001293 ORTHO05D001143 2.1e-06 56.2 107 35.5
Glyma.08G012800 Glycine max HOM05D001293 ORTHO05D001143 2.1e-06 56.2 107 35.5
Gorai.007G097700 Gossypium raimondii HOM05D001293 ORTHO05D001143 2.1e-06 56.2 118 41.5
Nitab4.5_0002160g0100 Nicotiana tabacum HOM05D001293 ORTHO05D001143 2.1e-06 56.2 117 38.5
Nitab4.5_0011760g0010 Nicotiana tabacum HOM05D001293 ORTHO05D001143 2.1e-06 56.2 117 38.5
Psat2g182000 Pisum sativum HOM05D001293 ORTHO05D001143 2.1e-06 56.2 104 43.3
Sp5g13110 Schrenkiella parvula HOM05D001293 ORTHO05D001143 2.1e-06 56.2 104 45.2
TWI23G0948 Tripterygium wilfordii HOM05D001293 ORTHO05D001143 2.1e-06 56.2 104 44.2
TAR375G0668 Trochodendron aralioides HOM05D001293 ORTHO05D001143 2.1e-06 56.2 104 44.2
Actinidia32862 Actinidia chinensis HOM05D001293 ORTHO05D001143 2.7e-06 55.8 104 44.2
CANSAT21G1207 Cannabis sativa HOM05D001293 ORTHO05D001143 2.7e-06 55.8 103 41.7
DCAR_006917 Daucus carota HOM05D001293 ORTHO05D001143 2.7e-06 55.8 120 40.0
HanXRQChr09g0253541 Helianthus annuus HOM05D001293 ORTHO05D001143 2.7e-06 55.8 101 45.5
MD01G1200400 Malus domestica HOM05D001293 ORTHO05D001143 2.7e-06 55.8 104 43.3
PGSC0003DMG400014339 Solanum tuberosum HOM05D001293 ORTHO05D001143 2.7e-06 55.8 105 42.9
Actinidia27392 Actinidia chinensis HOM05D001293 ORTHO05D001143 3.5e-06 55.5 104 40.4
MSTRG.8455 Avicennia marina HOM05D001293 ORTHO05D001143 3.5e-06 55.5 104 44.2
A06p18830 Brassica napus HOM05D001293 ORTHO05D001143 3.5e-06 55.5 104 43.3
Ciclev10005899m.g Citrus clementina HOM05D001293 ORTHO05D001143 3.5e-06 55.5 107 43.0
FAN08G1944 Fragaria x ananassa HOM05D001293 ORTHO05D001143 3.5e-06 55.5 106 33.0
Glyma.18G230500 Glycine max HOM05D001293 ORTHO05D001143 3.5e-06 55.5 117 39.3
MD07G1268200 Malus domestica HOM05D001293 ORTHO05D001143 3.5e-06 55.5 104 38.5
Medtr7g076730 Medicago truncatula HOM05D001293 ORTHO05D001143 3.5e-06 55.5 116 40.5
FvH4_5g02000 Fragaria vesca HOM05D001293 ORTHO05D001143 4.6e-06 55.1 103 42.7
FAN13G0042 Fragaria x ananassa HOM05D001293 ORTHO05D001143 4.6e-06 55.1 106 32.1
FAN18G3953 Fragaria x ananassa HOM05D001293 ORTHO05D001143 4.6e-06 55.1 103 42.7
MD14G1099200 Malus domestica HOM05D001293 ORTHO05D001143 4.6e-06 55.1 106 42.5
QL12p018126 Quercus lobata HOM05D001293 ORTHO05D001143 4.6e-06 55.1 104 41.3
Sed0002472 Sechium edule HOM05D001293 ORTHO05D001143 4.6e-06 55.1 104 43.3
TPR.G14344 Trifolium pratense HOM05D001293 ORTHO05D001143 4.6e-06 55.1 104 43.3
Atru.chr5.476 Acer truncatum HOM05D001293 ORTHO05D001143 6.0e-06 54.7 117 40.2
BcaC02g12178 Brassica carinata HOM05D001293 ORTHO05D001143 6.0e-06 54.7 116 39.7
Ca_17548_v3 Cicer arietinum L. HOM05D001293 ORTHO05D001143 6.0e-06 54.7 108 39.8
Duzib084G1237 Durio zibethinus HOM05D001293 ORTHO05D001143 6.0e-06 54.7 104 43.3
HanXRQChr04g0121491 Helianthus annuus HOM05D001293 ORTHO05D001143 6.0e-06 54.7 120 40.0
Lsat_1_v5_gn_9_56020 Lactuca sativa HOM05D001293 ORTHO05D001143 6.0e-06 54.7 101 44.6
SMO116G0391 Selaginella moellendorffii HOM05D001293 ORTHO05D001143 6.0e-06 54.7 109 42.2
TPR.G4394 Trifolium pratense HOM05D001293 ORTHO05D001143 6.0e-06 54.7 117 38.5
BcaC02g07061 Brassica carinata HOM05D001293 ORTHO05D001143 7.8e-06 54.3 116 39.7
BolC4t28685H Brassica oleracea HOM05D001293 ORTHO05D001143 7.8e-06 54.3 116 39.7
CiPaw.01G058300 Carya illinoinensis HOM05D001293 ORTHO05D001143 7.8e-06 54.3 114 37.7
Thhalv10001646m.g Eutrema salsugineum HOM05D001293 ORTHO05D001143 7.8e-06 54.3 116 39.7
Solyc05g048820.3 Solanum lycopersicum HOM05D001293 ORTHO05D001143 7.8e-06 54.3 117 38.5
Sopen05g028150 Solanum pennellii HOM05D001293 ORTHO05D001143 7.8e-06 54.3 117 38.5
HPP92_022559 Vanilla planifolia HOM05D001293 ORTHO05D001143 7.8e-06 54.3 105 39.0


User provided reference genes

Program Settings