Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G134200 Populus trichocarpa HOM05D007881 ORTHO05D009922 4.0e-29 131.0 76 100.0
Potri.015G136500 Populus trichocarpa HOM05D007881 ORTHO05D009922 1.8e-21 105.5 76 80.3
Sabra15G0148100 Salix brachista HOM05D007881 ORTHO05D009922 6.8e-21 103.6 74 73.0
Ciclev10033256m.g Citrus clementina HOM05D007881 ORTHO05D009922 1.9e-18 95.5 80 63.8
Manes.12G005400 Manihot esculenta HOM05D007881 ORTHO05D009922 3.2e-18 94.7 78 67.9
COL.COLO4_38031 Corchorus olitorius HOM05D007881 ORTHO05D009922 2.5e-15 85.1 79 59.5
Thecc.05G194300 Theobroma cacao HOM05D007881 ORTHO05D009922 4.3e-15 84.3 79 58.2
Gohir.A05G392600 Gossypium hirsutum HOM05D007881 ORTHO05D009922 1.2e-14 82.8 79 58.2
Gohir.D04G024500 Gossypium hirsutum HOM05D007881 ORTHO05D009922 1.2e-14 82.8 79 58.2
Gorai.012G027000 Gossypium raimondii HOM05D007881 ORTHO05D009922 1.2e-14 82.8 79 58.2
Atru.chr6.1889 Acer truncatum HOM05D007881 ORTHO05D009922 2.1e-14 82.0 80 56.2
Sp1g04830 Schrenkiella parvula HOM05D007881 ORTHO05D009922 2.4e-13 78.6 79 58.2
TWI36G1222 Tripterygium wilfordii HOM05D007881 ORTHO05D009922 4.0e-13 77.8 79 54.4
Prupe.6G361800 Prunus persica HOM05D007881 ORTHO05D009922 1.2e-12 76.3 44 79.5
Cpa.g.sc9.142 Carica papaya HOM05D007881 ORTHO05D009922 1.5e-12 75.9 74 62.2
MD04G1245200 Malus domestica HOM05D007881 ORTHO05D009922 3.4e-12 74.7 66 57.6
AL1G15960 Arabidopsis lyrata HOM05D007881 ORTHO05D009922 4.4e-12 74.3 79 53.2
CARHR005530 Cardamine hirsuta HOM05D007881 ORTHO05D009922 4.4e-12 74.3 72 58.3
BcaC07g36818 Brassica carinata HOM05D007881 ORTHO05D009922 5.8e-12 73.9 77 57.1
BolC8t47025H Brassica oleracea HOM05D007881 ORTHO05D009922 5.8e-12 73.9 77 57.1
BraA08t35524Z Brassica rapa HOM05D007881 ORTHO05D009922 5.8e-12 73.9 72 55.6
Carub.0001s0535 Capsella rubella HOM05D007881 ORTHO05D009922 7.6e-12 73.6 79 51.9
CiPaw.07G080900 Carya illinoinensis HOM05D007881 ORTHO05D009922 7.6e-12 73.6 75 54.7
CAN.G217.11 Capsicum annuum HOM05D007881 ORTHO05D009922 9.9e-12 73.2 76 53.9
PGR119G1449 Punica granatum HOM05D007881 ORTHO05D009922 1.3e-11 72.8 68 57.4
THA.LOC109117253 Tarenaya hassleriana HOM05D007881 ORTHO05D009922 1.3e-11 72.8 80 52.5
A08p36200 Brassica napus HOM05D007881 ORTHO05D009922 1.7e-11 72.4 76 56.6
Eucgr.B01417 Eucalyptus grandis HOM05D007881 ORTHO05D009922 2.9e-11 71.6 41 78.0
GSVIVG01019086001 Vitis vinifera HOM05D007881 ORTHO05D009922 2.9e-11 71.6 79 51.9
AT1G06010 Arabidopsis thaliana HOM05D007881 ORTHO05D009922 3.8e-11 71.2 44 77.3
Thhalv10009243m.g Eutrema salsugineum HOM05D007881 ORTHO05D009922 3.8e-11 71.2 76 55.3
QL12p018644 Quercus lobata HOM05D007881 ORTHO05D009922 4.9e-11 70.9 78 57.7
MD12G1086700 Malus domestica HOM05D007881 ORTHO05D009922 6.4e-11 70.5 74 52.7
Peaxi162Scf00048g00055 Petunia axillaris HOM05D007881 ORTHO05D009922 6.4e-11 70.5 72 54.2
Solyc04g056425.1 Solanum lycopersicum HOM05D007881 ORTHO05D009922 8.4e-11 70.1 74 54.1
Phvul.005G031800 Phaseolus vulgaris HOM05D007881 ORTHO05D009922 1.4e-10 69.3 67 53.7
Sopen04g025320 Solanum pennellii HOM05D000039 ORTHO05D000366 1.4e-10 69.3 72 51.4
Nn7g37671 Nelumbo nucifera HOM05D007881 ORTHO05D009922 1.9e-10 68.9 44 70.5
BcaC07g42091 Brassica carinata HOM05D007881 ORTHO05D009922 2.4e-10 68.6 72 55.6
Actinidia03288 Actinidia chinensis HOM05D007881 ORTHO05D009922 3.2e-10 68.2 43 72.1
CSS0004298 Camellia sinensis var. sinensis HOM05D007881 ORTHO05D009922 3.2e-10 68.2 44 70.5
CsaV3_1G044490 Cucumis sativus L. HOM05D007881 ORTHO05D009922 3.2e-10 68.2 67 52.2
Nitab4.5_0000083g0100 Nicotiana tabacum HOM05D007881 ORTHO05D009922 4.1e-10 67.8 44 68.2
ClCG03G010640 Citrullus lanatus HOM05D007881 ORTHO05D009922 5.4e-10 67.4 58 58.6
SalBow1G5699 Salvia bowleyana HOM05D007881 ORTHO05D009922 9.2e-10 66.6 74 47.3
TAR362G1041 Trochodendron aralioides HOM05D007881 ORTHO05D009922 9.2e-10 66.6 44 65.9
A09p67190 Brassica napus HOM05D007881 ORTHO05D009922 1.2e-09 66.2 38 84.2
C08p51460 Brassica napus HOM05D000559 ORTHO05D009922 1.2e-09 66.2 38 84.2
BolC8t52672H Brassica oleracea HOM05D007881 ORTHO05D009922 1.2e-09 66.2 38 84.2
Nitab4.5_0001435g0080 Nicotiana tabacum HOM05D007881 ORTHO05D009922 1.2e-09 66.2 72 47.2
vmacro10404 Vaccinium macrocarpon HOM05D007881 ORTHO05D009922 1.2e-09 66.2 44 63.6
Cc09_g03690 Coffea canephora HOM05D007881 ORTHO05D009922 1.6e-09 65.9 42 66.7
MELO3C010052.2 Cucumis melo HOM05D007881 ORTHO05D009922 1.6e-09 65.9 65 52.3
Oeu034791.1 Olea europaea HOM05D007881 ORTHO05D009922 2.1e-09 65.5 44 63.6
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 2.1e-09 65.5 76 46.1
RcHm_v2.0_Chr3g0447831 Rosa chinensis HOM05D007881 ORTHO05D009922 3.5e-09 64.7 75 52.0
Migut.F02122 Erythranthe guttata HOM05D007881 ORTHO05D009922 4.6e-09 64.3 76 44.7
arahy.Tifrunner.gnm1.ann1.FFCC7D Arachis hypogaea HOM05D007881 ORTHO05D009922 7.8e-09 63.5 44 63.6
arahy.Tifrunner.gnm1.ann1.X7CW9T Arachis hypogaea HOM05D007881 ORTHO05D009922 7.8e-09 63.5 44 63.6
AUR62000305 Chenopodium quinoa HOM05D007881 ORTHO05D009922 7.8e-09 63.5 78 48.7
ATR0215G006 Amborella trichopoda HOM05D007881 ORTHO05D009922 1.0e-08 63.2 41 68.3
AUR62006650 Chenopodium quinoa HOM05D007881 ORTHO05D009922 3.0e-08 61.6 72 51.4
DCAR_007684 Daucus carota HOM05D007881 ORTHO05D009922 3.0e-08 61.6 72 43.1
Sed0019316 Sechium edule HOM05D007881 ORTHO05D009922 3.9e-08 61.2 36 75.0
FvH4_6g00460 Fragaria vesca HOM05D007881 ORTHO05D009922 5.1e-08 60.8 63 47.6
Lj3g0003474 Lotus japonicus HOM05D007881 ORTHO05D009922 5.1e-08 60.8 44 61.4
Aqoxy3G03631 Aquilegia oxysepala HOM05D007881 ORTHO05D009922 8.7e-08 60.1 42 64.3
Glyma.11G151200 Glycine max HOM05D007881 ORTHO05D009922 8.7e-08 60.1 44 68.2
arahy.Tifrunner.gnm1.ann1.FG2V1D Arachis hypogaea HOM05D007881 ORTHO05D009922 1.1e-07 59.7 44 63.6
Medtr3g032520 Medicago truncatula HOM05D007881 ORTHO05D009922 1.1e-07 59.7 41 61.0
Lalb_Chr25g0282841 Lupinus albus HOM05D007881 ORTHO05D009922 1.5e-07 59.3 74 47.3
FAN02G0717 Fragaria x ananassa HOM05D007881 ORTHO05D009922 1.9e-07 58.9 59 49.2
FAN09G3126 Fragaria x ananassa HOM05D007881 ORTHO05D009922 2.5e-07 58.5 63 46.0
HPP92_003553 Vanilla planifolia HOM05D007881 ORTHO05D009922 2.5e-07 58.5 39 69.2
PGSC0003DMG400007262 Solanum tuberosum HOM05D007881 ORTHO05D009922 3.3e-07 58.2 98 38.8
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 7.3e-07 57.0 44 54.5
Psat5g210160 Pisum sativum HOM05D007881 ORTHO05D009922 7.3e-07 57.0 41 61.0
Psat5g211080 Pisum sativum HOM05D007881 ORTHO05D009922 7.3e-07 57.0 58 56.9
EL10Ac4g09960 Beta vulgaris HOM05D007881 ORTHO05D009922 1.6e-06 55.8 43 55.8
Lsat_1_v5_gn_1_127981 Lactuca sativa HOM05D007881 ORTHO05D009922 1.6e-06 55.8 44 50.0
BraA09t42051Z Brassica rapa HOM05D007881 ORTHO05D009922 2.8e-06 55.1 72 47.2
HanXRQChr16g0510911 Helianthus annuus HOM05D007881 ORTHO05D009922 3.6e-06 54.7 66 40.9
CDE02G1687 Ceratophyllum demersum HOM05D007881 ORTHO05D009922 4.7e-06 54.3 42 54.8


User provided reference genes

Program Settings