Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 8.5e-131 470.3 232 100.0
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.5e-106 389.8 231 84.4
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 1.8e-104 382.9 208 90.9
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 3.4e-95 352.1 228 77.2
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 4.9e-94 348.2 232 72.0
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 1.6e-92 343.2 227 75.3
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 5.9e-92 341.3 232 72.0
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 2.3e-91 339.3 233 75.5
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 3.8e-91 338.6 231 73.6
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 1.1e-90 337.0 225 72.0
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 3.3e-90 335.5 234 73.1
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 3.6e-89 332.0 226 72.1
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 8.0e-89 330.9 233 70.4
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 8.0e-89 330.9 234 69.2
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 2.3e-88 329.3 234 68.8
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 5.2e-88 328.2 228 71.5
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 6.8e-88 327.8 227 70.5
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 2.6e-87 325.9 233 73.8
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 4.4e-87 325.1 234 69.7
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 5.7e-87 324.7 228 70.2
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 5.7e-87 324.7 227 70.5
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 5.7e-87 324.7 237 70.5
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 1.7e-86 323.2 233 72.1
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 2.2e-86 322.8 232 70.3
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 2.9e-86 322.4 232 69.4
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 1.4e-85 320.1 227 70.0
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.4e-85 320.1 222 70.7
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 2.4e-85 319.3 228 69.7
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 4.1e-85 318.5 234 73.1
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 5.4e-85 318.2 234 69.2
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 7.0e-85 317.8 236 73.3
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 9.2e-85 317.4 230 69.6
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 1.6e-84 316.6 232 70.7
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 3.5e-84 315.5 229 70.3
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 7.8e-84 314.3 228 68.0
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 2.3e-83 312.8 236 67.8
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 2.3e-83 312.8 229 69.4
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 5.0e-83 311.6 236 68.2
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 8.6e-83 310.8 234 67.1
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 8.6e-83 310.8 225 69.8
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 8.6e-83 310.8 228 67.1
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 7.3e-82 307.8 221 71.5
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 7.3e-82 307.8 230 67.4
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 2.8e-81 305.8 228 64.9
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 4.0e-80 302.0 228 65.4
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 5.2e-80 301.6 210 70.0
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 2.6e-79 299.3 232 64.7
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 5.8e-79 298.1 228 65.4
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 7.5e-79 297.7 241 62.2
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 4.9e-78 295.0 230 65.7
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 4.9e-78 295.0 234 65.0
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 1.1e-77 293.9 234 67.1
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 1.1e-77 293.9 228 64.9
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 2.4e-77 292.7 234 65.4
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 2.4e-77 292.7 234 65.4
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 3.2e-77 292.4 230 63.9
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 4.1e-77 292.0 232 65.1
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.2e-76 290.4 224 65.6
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 4.6e-76 288.5 233 62.2
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 4.6e-76 288.5 228 65.8
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 6.0e-76 288.1 231 64.1
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 1.7e-75 286.6 227 63.0
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 3.0e-75 285.8 226 65.5
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 8.6e-75 284.3 234 64.5
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 1.5e-74 283.5 230 63.9
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.3e-74 282.3 226 65.5
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 3.3e-74 282.3 226 65.0
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 5.6e-74 281.6 226 65.0
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 1.6e-73 280.0 230 62.2
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 6.2e-73 278.1 231 61.5
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 8.1e-73 277.7 232 64.2
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 1.1e-72 277.3 235 63.4
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 4.0e-72 275.4 233 61.4
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 1.2e-71 273.9 233 61.4
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 1.2e-71 273.9 233 63.5
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 1.5e-71 273.5 238 62.2
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.7e-70 270.0 230 60.9
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 2.2e-70 269.6 239 61.1
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 4.9e-70 268.5 207 65.7
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 6.4e-70 268.1 222 61.3
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 8.3e-70 267.7 220 63.6
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 1.4e-69 266.9 236 63.1
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 1.9e-69 266.5 215 61.9
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 9.2e-69 264.2 210 64.3
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 2.7e-68 262.7 282 53.2
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 3.5e-68 262.3 232 59.9
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 6.0e-68 261.5 219 61.6
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 6.0e-68 261.5 212 62.3
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 1.1e-66 257.3 278 53.6
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 1.5e-66 256.9 209 64.6
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 1.9e-66 256.5 207 61.4
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 2.5e-66 256.1 240 59.6
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 7.3e-66 254.6 247 55.5
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 1.8e-64 250.0 225 56.0
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 4.0e-64 248.8 225 56.0
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 6.8e-64 248.1 227 56.4
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 2.0e-63 246.5 238 55.0
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 2.0e-63 246.5 212 59.9
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 7.1e-61 238.0 233 57.5
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 1.3e-59 233.8 210 58.6
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 2.1e-57 226.5 181 64.6
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 1.1e-56 224.2 161 70.2
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 1.4e-56 223.8 156 70.5
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 4.0e-56 222.2 232 53.4
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.4e-53 213.8 230 50.4
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 3.5e-52 209.1 234 49.6
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 1.9e-50 203.4 266 44.4
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 1.6e-49 200.3 230 49.6
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 9.0e-48 194.5 190 56.3
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 3.4e-47 192.6 217 50.7
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 2.2e-46 189.9 234 47.9
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 5.4e-45 185.3 221 47.1
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 2.5e-42 176.4 227 44.1
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 1.6e-41 173.7 180 49.4
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 1.1e-40 171.0 136 63.2
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 1.2e-39 167.5 140 64.3
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 1.7e-38 163.7 234 43.2
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 1.9e-37 160.2 133 57.9
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 3.2e-37 159.5 246 42.3
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 3.0e-35 152.9 93 75.3
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 5.6e-34 148.7 220 43.6
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 4.0e-32 142.5 128 61.7
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 3.4e-31 139.4 136 55.1
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 6.5e-30 135.2 142 52.8
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 9.3e-29 131.3 98 66.3
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.2e-28 131.0 95 65.3
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 2.7e-28 129.8 97 69.1
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 1.2e-23 114.4 112 55.4
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 3.8e-22 109.4 135 49.6
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 3.2e-21 106.3 153 40.5
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 2.3e-19 100.1 217 32.3
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 2.5e-18 96.7 101 53.5
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.3e-18 96.3 135 43.7
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.8e-16 90.5 109 45.0
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 6.9e-16 88.6 189 32.8
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 2.0e-15 87.0 75 61.3
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 3.4e-15 86.3 82 57.3
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 2.1e-12 77.0 101 43.6
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.7e-12 75.9 94 46.8
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 3.3e-10 69.7 53 60.4
THA.LOC104821571 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 4.5e-07 59.3 96 47.9
BolC2t12268H Brassica oleracea HOM05D005662 ORTHO05D007004 6.5e-06 55.5 55 49.1


User provided reference genes

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