Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G127100 Populus trichocarpa HOM05D006478 ORTHO05D008071 3.4e-84 315.1 171 100.0
Sabra12G0096300 Salix brachista HOM05D006478 ORTHO05D008071 2.0e-76 289.3 171 91.8
Manes.14G035000 Manihot esculenta HOM05D006478 ORTHO05D008071 4.7e-54 214.9 169 69.2
TWI23G1172 Tripterygium wilfordii HOM05D006478 ORTHO05D008071 4.4e-52 208.4 171 66.7
CiPaw.04G061000 Carya illinoinensis HOM05D006478 ORTHO05D008071 9.2e-50 200.7 173 62.4
Ciclev10006041m.g Citrus clementina HOM05D006478 ORTHO05D008071 7.8e-49 197.6 174 62.1
CSS0006490 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 1.0e-48 197.2 176 64.2
FAN12G3923 Fragaria x ananassa HOM05D006478 ORTHO05D008071 1.0e-48 197.2 170 59.4
QL09p018992 Quercus lobata HOM05D006478 ORTHO05D008071 1.0e-48 197.2 172 64.0
Prupe.2G278900 Prunus persica HOM05D006478 ORTHO05D008071 2.3e-48 196.1 173 61.3
RcHm_v2.0_Chr4g0413311 Rosa chinensis HOM05D006478 ORTHO05D008071 3.0e-48 195.7 174 59.8
Actinidia31787 Actinidia chinensis HOM05D006478 ORTHO05D008071 5.1e-48 194.9 175 61.7
FAN17G1857 Fragaria x ananassa HOM05D006478 ORTHO05D008071 6.6e-48 194.5 170 58.8
MD07G1255100 Malus domestica HOM05D006478 ORTHO05D008071 1.5e-47 193.4 173 59.5
Atru.chr1.683 Acer truncatum HOM05D006478 ORTHO05D008071 1.9e-47 193.0 174 62.6
FvH4_4g13180 Fragaria vesca HOM05D006478 ORTHO05D008071 1.9e-47 193.0 170 58.2
CSS0007785 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 2.5e-47 192.6 176 64.2
CANSAT56G4273 Cannabis sativa HOM05D006478 ORTHO05D008071 4.3e-47 191.8 173 59.0
Dinv22954 Davidia involucrata HOM05D006478 ORTHO05D008071 9.6e-47 190.7 175 62.3
Dinv28557 Davidia involucrata HOM05D000120 ORTHO05D000068 3.6e-46 188.7 164 65.2
THA.LOC104811518 Tarenaya hassleriana HOM05D006478 ORTHO05D008071 8.9e-45 184.1 169 63.3
Cfa008204 Carpinus fangiana HOM05D006478 ORTHO05D008071 2.0e-44 183.0 173 60.1
PGR042G2342 Punica granatum HOM05D006478 ORTHO05D008071 1.1e-42 177.2 173 56.6
EL10Ac3g05828 Beta vulgaris HOM05D006478 ORTHO05D008071 9.3e-42 174.1 175 54.9
Nn6g34073 Nelumbo nucifera HOM05D006478 ORTHO05D008071 2.7e-41 172.6 178 54.5
Nitab4.5_0001383g0120 Nicotiana tabacum HOM05D006478 ORTHO05D008071 2.7e-41 172.6 173 57.2
DCAR_018100 Daucus carota HOM05D006478 ORTHO05D008071 7.8e-41 171.0 173 55.5
DCAR_028724 Daucus carota HOM05D006478 ORTHO05D008071 7.8e-41 171.0 175 56.0
GSVIVG01018613001 Vitis vinifera HOM05D006478 ORTHO05D008071 2.3e-40 169.5 175 57.1
Sed0002492 Sechium edule HOM05D006478 ORTHO05D008071 3.0e-40 169.1 173 54.9
AUR62015523 Chenopodium quinoa HOM05D006478 ORTHO05D008071 6.6e-40 167.9 175 53.7
MSTRG.8414 Avicennia marina HOM05D006478 ORTHO05D008071 1.5e-39 166.8 173 53.8
Eucgr.A02884 Eucalyptus grandis HOM05D006478 ORTHO05D008071 3.3e-39 165.6 173 55.5
Migut.O00298 Erythranthe guttata HOM05D006478 ORTHO05D008071 4.3e-39 165.2 172 53.5
SalBow5G3546 Salvia bowleyana HOM05D006478 ORTHO05D008071 5.6e-39 164.9 173 54.9
SalBow5G4313 Salvia bowleyana HOM05D006478 ORTHO05D008071 5.6e-39 164.9 173 54.9
CsaV3_3G016200 Cucumis sativus L. HOM05D006478 ORTHO05D008071 7.3e-39 164.5 173 53.8
CAN.G645.17 Capsicum annuum HOM05D006478 ORTHO05D008071 9.6e-39 164.1 173 53.2
MELO3C006818.2 Cucumis melo HOM05D006478 ORTHO05D008071 9.6e-39 164.1 173 53.2
TAR629G1779 Trochodendron aralioides HOM05D006478 ORTHO05D008071 1.6e-38 163.3 183 53.6
AUR62002188 Chenopodium quinoa HOM05D006478 ORTHO05D008071 2.1e-38 162.9 175 53.1
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 2.1e-38 162.9 173 52.6
Hma1.2p1_0146F.1_g065730 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 2.1e-38 162.9 184 55.4
FAN07G1397 Fragaria x ananassa HOM05D006478 ORTHO05D008071 2.8e-38 162.5 144 57.6
vmacro09898 Vaccinium macrocarpon HOM05D006478 ORTHO05D008071 1.8e-37 159.8 150 58.7
Sopen11g002780 Solanum pennellii HOM05D006478 ORTHO05D008071 2.4e-37 159.5 173 54.3
Cc07_g16780 Coffea canephora HOM05D006478 ORTHO05D008071 3.1e-37 159.1 165 55.2
CARHR264290 Cardamine hirsuta HOM05D006478 ORTHO05D008071 9.0e-37 157.5 173 53.2
Thhalv10014843m.g Eutrema salsugineum HOM05D006478 ORTHO05D008071 1.5e-36 156.8 173 53.8
SGA_v2.0_scaffold10G05491 Striga asiatica HOM05D006478 ORTHO05D008071 2.6e-36 156.0 173 52.6
PSO170G1682 Papaver somniferum HOM05D006478 ORTHO05D008071 3.4e-36 155.6 171 50.3
HanXRQChr13g0420601 Helianthus annuus HOM05D006478 ORTHO05D008071 7.6e-36 154.5 173 49.1
AT5G51510 Arabidopsis thaliana HOM05D006478 ORTHO05D008071 9.9e-36 154.1 173 53.8
Sp6g13670 Schrenkiella parvula HOM05D006478 ORTHO05D008071 9.9e-36 154.1 173 53.2
Lsat_1_v5_gn_8_8920 Lactuca sativa HOM05D006478 ORTHO05D008071 1.3e-35 153.7 173 48.6
ECA233G2919 Erigeron canadensis HOM05D006478 ORTHO05D008071 1.7e-35 153.3 173 49.7
AL8G25810 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 2.2e-35 152.9 173 53.2
PSO782G1599 Papaver somniferum HOM05D006478 ORTHO05D008071 2.2e-35 152.9 171 49.7
AL64U10030 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 6.4e-35 151.4 173 52.6
Carub.0008s1155 Capsella rubella HOM05D006478 ORTHO05D008071 6.4e-35 151.4 173 52.6
Sc19g0001980 Simmondsia chinensis HOM05D006478 ORTHO05D008071 1.4e-34 150.2 167 51.5
arahy.Tifrunner.gnm1.ann1.R2ZWGQ Arachis hypogaea HOM05D006478 ORTHO05D008071 2.4e-34 149.4 181 51.4
Atru.chr12.858 Acer truncatum HOM05D006478 ORTHO05D008071 2.7e-33 146.0 125 66.4
Gohir.A01G099000 Gossypium hirsutum HOM05D006478 ORTHO05D008071 2.7e-33 146.0 174 48.9
Gohir.D01G083500 Gossypium hirsutum HOM05D006478 ORTHO05D008071 4.6e-33 145.2 174 48.9
Gorai.002G109200 Gossypium raimondii HOM05D006478 ORTHO05D008071 4.6e-33 145.2 174 48.9
Duzib213G0671 Durio zibethinus HOM05D006478 ORTHO05D008071 7.8e-33 144.4 174 49.4
Os10g0508600 Oryza sativa ssp. japonica HOM05D006478 ORTHO05D008071 1.0e-32 144.1 173 48.0
BcaB08g35507 Brassica carinata HOM05D006478 ORTHO05D008071 1.7e-32 143.3 174 49.4
Haze_13851 Corylus avellana HOM05D006478 ORTHO05D008071 8.7e-32 141.0 173 52.6
BcaC04g20665 Brassica carinata HOM05D006478 ORTHO05D008071 1.1e-31 140.6 174 48.3
C09p40820 Brassica napus HOM05D006478 ORTHO05D008071 1.1e-31 140.6 174 48.3
BolC9t56962H Brassica oleracea HOM05D006478 ORTHO05D008071 1.1e-31 140.6 174 48.3
A10p09440 Brassica napus HOM05D006478 ORTHO05D008071 1.5e-31 140.2 176 48.3
BraA10t43020Z Brassica rapa HOM05D006478 ORTHO05D008071 1.5e-31 140.2 176 48.3
Hma1.2p1_0654F.1_g196670 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 1.5e-31 140.2 180 46.7
Psat2g100400 Pisum sativum HOM05D006478 ORTHO05D008071 1.5e-31 140.2 181 48.1
ECA247G1821 Erigeron canadensis HOM05D006478 ORTHO05D008071 1.9e-31 139.8 173 48.6
Thecc.07G184100 Theobroma cacao HOM05D006478 ORTHO05D008071 1.9e-31 139.8 174 47.7
Zm00001eb043910 Zea mays HOM05D006478 ORTHO05D008071 3.3e-31 139.0 166 47.0
Aa31LG3G7930 Aethionema arabicum HOM05D006478 ORTHO05D008071 5.6e-31 138.3 203 47.3
Lalb_Chr19g0140371 Lupinus albus HOM05D006478 ORTHO05D008071 5.6e-31 138.3 182 46.2
Medtr3g075310 Medicago truncatula HOM05D006478 ORTHO05D008071 2.1e-30 136.3 180 46.1
PGSC0003DMG400023983 Solanum tuberosum HOM05D006478 ORTHO05D008071 2.1e-30 136.3 174 50.0
Psat3g066720 Pisum sativum HOM05D006478 ORTHO05D008071 4.8e-30 135.2 180 47.2
Glyma.18G235100 Glycine max HOM05D006478 ORTHO05D008071 1.8e-29 133.3 181 44.8
Ca_03612_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 3.1e-29 132.5 181 44.8
TPR.G3657 Trifolium pratense HOM05D006478 ORTHO05D008071 6.9e-29 131.3 178 46.1
arahy.Tifrunner.gnm1.ann1.LW4644 Arachis hypogaea HOM05D006478 ORTHO05D008071 7.6e-28 127.9 149 51.0
Glyma.09G257500 Glycine max HOM05D006478 ORTHO05D008071 9.9e-28 127.5 216 38.0
Lj6g0019546 Lotus japonicus HOM05D006478 ORTHO05D008071 1.3e-27 127.1 181 44.8
Phvul.011G177900 Phaseolus vulgaris HOM05D006478 ORTHO05D008071 8.4e-27 124.4 181 43.1
Rhsim09G0192300 Rhododendron simsii HOM05D006478 ORTHO05D008071 8.4e-27 124.4 148 52.7
Peaxi162Scf00241g00526 Petunia axillaris HOM05D006478 ORTHO05D008071 1.4e-26 123.6 152 49.3
HPP92_021027 Vanilla planifolia HOM05D006478 ORTHO05D008071 3.5e-25 119.0 170 44.7
Hund04605 Selenicereus undatus HOM05D006478 ORTHO05D008071 8.7e-24 114.4 137 46.0
RcHm_v2.0_Chr4g0409771 Rosa chinensis HOM05D006478 ORTHO05D008071 5.6e-23 111.7 118 50.8
CDE02G0477 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 1.3e-22 110.5 119 48.7
CDE11G0941 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 1.3e-22 110.5 119 47.1
ATR0049G082 Amborella trichopoda HOM05D006478 ORTHO05D008071 7.6e-20 101.3 112 50.0
CAN.G1338.3 Capsicum annuum HOM05D006478 ORTHO05D008071 7.6e-20 101.3 128 44.5
Aqoxy3G03162 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 1.0e-19 100.9 171 38.0
TAR125G0001 Trochodendron aralioides HOM05D006478 ORTHO05D008071 1.3e-19 100.5 165 40.6
Solyc11g006880.3 Solanum lycopersicum HOM05D006478 ORTHO05D008071 9.3e-18 94.4 117 47.0
Prupe.2G279400 Prunus persica HOM05D006478 ORTHO05D008071 3.5e-17 92.4 101 48.5
unitig_8.g3700 Utricularia gibba HOM05D006478 ORTHO05D008071 7.9e-17 91.3 145 37.2
Pp3c3_28350 Physcomitrium patens HOM05D006478 ORTHO05D008071 1.3e-16 90.5 168 32.7
VMungo1127G0460 Vigna mungo HOM05D006478 ORTHO05D008071 2.1e-14 83.2 131 38.2
Mapoly0022s0103 Marchantia polymorpha HOM05D006478 ORTHO05D008071 3.7e-14 82.4 174 31.6
Sed0011118 Sechium edule HOM05D006478 ORTHO05D008071 6.2e-14 81.6 173 35.3
Manes.03G110816 Manihot esculenta HOM05D006478 ORTHO05D008071 1.4e-13 80.5 80 62.5
CiPaw.05G217800 Carya illinoinensis HOM05D006478 ORTHO05D008071 1.8e-13 80.1 70 58.6
Lj1g0017005 Lotus japonicus HOM05D006478 ORTHO05D008071 4.5e-12 75.5 144 38.9
Oeu014948.1 Olea europaea HOM05D006478 ORTHO05D008071 1.1e-10 70.9 84 45.2
Ca_10075_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 1.0e-08 64.3 46 71.7
CBR_g39926 Chara braunii HOM05D006478 ORTHO05D008071 1.8e-08 63.5 190 32.6
Actinidia03077 Actinidia chinensis HOM05D006478 ORTHO05D008071 5.7e-07 58.5 175 32.0
Nitab4.5_0001780g0030 Nicotiana tabacum HOM05D006478 ORTHO05D008071 9.7e-07 57.8 68 45.6
Medtr1g069420 Medicago truncatula HOM05D002356 ORTHO05D002546 1.3e-06 57.4 94 31.9
SHI13954 Sapria himalayana HOM05D006478 ORTHO05D008071 1.6e-06 57.0 44 63.6
HPP92_020994 Vanilla planifolia HOM05D006478 ORTHO05D008071 6.3e-06 55.1 122 32.8


User provided reference genes

Program Settings