Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.5e-50 202.6 104 100.0
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 7.6e-39 163.7 87 96.6
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 8.7e-35 150.2 98 84.7
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 2.4e-32 142.1 98 79.6
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 3.1e-32 141.7 97 80.4
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.9e-30 135.2 87 80.5
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 1.8e-27 125.9 88 71.6
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 8.7e-27 123.6 88 72.7
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 8.7e-27 123.6 87 72.4
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 1.1e-26 123.2 76 88.2
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 1.5e-26 122.9 89 69.7
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.9e-26 122.5 88 72.7
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 3.3e-26 121.7 95 62.1
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 5.7e-26 120.9 92 68.5
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 2.1e-25 119.0 88 64.8
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 4.1e-24 114.8 91 68.1
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 6.9e-24 114.0 88 68.2
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 6.9e-24 114.0 93 62.4
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 6.9e-24 114.0 87 65.5
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 9.0e-24 113.6 88 64.8
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.2e-23 113.2 91 67.0
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.2e-23 113.2 88 64.8
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 1.5e-23 112.8 87 64.4
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.0e-23 112.5 88 61.4
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.4e-23 111.7 88 68.2
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 4.5e-23 111.3 87 60.9
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 4.5e-23 111.3 89 64.0
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 4.5e-23 111.3 89 62.9
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.0e-22 110.2 88 60.2
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.0e-22 110.2 88 63.6
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.2e-22 109.0 88 59.1
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.2e-22 109.0 88 65.9
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.9e-22 108.6 88 58.0
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 5.0e-22 107.8 88 63.6
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 6.5e-22 107.5 89 61.8
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.1e-21 106.7 88 61.4
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 4.2e-21 104.8 89 59.6
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 5.5e-21 104.4 82 67.1
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 1.2e-20 103.2 86 59.3
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 1.6e-20 102.8 88 59.1
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 2.1e-20 102.4 89 59.6
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.0e-19 100.1 95 55.8
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.3e-19 99.8 89 56.2
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 1.8e-19 99.4 87 60.9
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 2.3e-19 99.0 91 59.3
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 8.7e-19 97.1 89 57.3
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 1.1e-18 96.7 83 57.8
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.5e-18 96.3 90 58.9
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 2.5e-18 95.5 95 53.7
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 3.3e-18 95.1 85 54.1
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 3.3e-18 95.1 88 55.7
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 5.7e-18 94.4 95 53.7
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 7.4e-18 94.0 87 54.0
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 7.4e-18 94.0 87 56.3
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.3e-17 93.2 86 55.8
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.6e-17 92.8 87 52.9
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.2e-17 92.4 95 52.6
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.8e-17 92.0 88 52.3
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 3.7e-17 91.7 95 51.6
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 3.7e-17 91.7 88 54.5
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 3.7e-17 91.7 95 51.6
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 4.8e-17 91.3 95 51.6
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 6.3e-17 90.9 95 51.6
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.2e-17 90.5 97 51.5
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.2e-17 90.5 97 51.5
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 8.2e-17 90.5 95 51.6
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 8.2e-17 90.5 95 51.6
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 8.2e-17 90.5 95 51.6
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 8.2e-17 90.5 95 50.5
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.1e-16 90.1 88 50.0
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.1e-16 90.1 89 51.7
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.1e-16 90.1 95 51.6
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.4e-16 89.7 87 47.1
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.4e-16 89.7 88 52.3
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 1.4e-16 89.7 87 55.2
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.8e-16 89.4 95 51.6
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.8e-16 89.4 95 51.6
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.8e-16 89.4 95 51.6
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 1.8e-16 89.4 87 54.0
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 1.8e-16 89.4 89 55.1
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.8e-16 89.4 89 56.2
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.8e-16 89.4 89 50.6
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 1.8e-16 89.4 88 51.1
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.4e-16 89.0 87 56.3
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.4e-16 89.0 87 56.3
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 3.1e-16 88.6 86 47.7
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.1e-16 88.2 95 50.5
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 5.3e-16 87.8 95 49.5
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 5.3e-16 87.8 89 49.4
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 6.9e-16 87.4 88 50.0
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 6.9e-16 87.4 88 48.9
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 9.0e-16 87.0 85 49.4
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 9.0e-16 87.0 76 63.2
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 1.2e-15 86.7 88 54.5
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.5e-15 86.3 88 46.6
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 1.5e-15 86.3 95 49.5
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.5e-15 86.3 95 48.4
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 2.0e-15 85.9 88 46.6
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 2.0e-15 85.9 95 48.4
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 2.0e-15 85.9 95 48.4
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 2.0e-15 85.9 95 48.4
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 2.0e-15 85.9 95 48.4
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 2.0e-15 85.9 89 49.4
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.0e-15 85.9 88 51.1
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 2.0e-15 85.9 88 51.1
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 2.6e-15 85.5 95 48.4
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 2.6e-15 85.5 88 53.4
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 2.6e-15 85.5 87 51.7
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 4.5e-15 84.7 95 47.4
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 4.5e-15 84.7 95 47.4
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 4.5e-15 84.7 95 47.4
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 5.9e-15 84.3 87 50.6
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 5.9e-15 84.3 87 50.6
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 5.9e-15 84.3 88 50.0
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 5.9e-15 84.3 88 46.6
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 5.9e-15 84.3 85 51.8
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 5.9e-15 84.3 90 50.0
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 7.7e-15 84.0 95 48.4
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 1.3e-14 83.2 87 55.2
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.3e-14 83.2 83 50.6
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.7e-14 82.8 88 45.5
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 2.2e-14 82.4 76 56.6
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 2.2e-14 82.4 88 46.6
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.8e-14 81.6 91 51.6
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 5.0e-14 81.3 88 48.9
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 6.5e-14 80.9 87 50.6
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 8.5e-14 80.5 87 47.1
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 8.5e-14 80.5 85 51.8
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 8.5e-14 80.5 88 46.6
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 1.9e-13 79.3 77 54.5
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 5.5e-13 77.8 90 44.4
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.6e-12 76.3 88 42.0
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 2.7e-12 75.5 89 46.1
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 4.6e-12 74.7 74 54.1
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 6.1e-12 74.3 87 43.7
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.0e-11 73.6 87 43.7
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.8e-11 72.8 87 44.8
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.8e-11 72.8 87 46.0
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.8e-11 72.8 88 44.3
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.3e-11 72.4 93 44.1
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 4.3e-10 68.2 72 51.4
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 4.3e-10 68.2 67 53.7
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 9.1e-08 60.5 70 45.7
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 1.3e-06 56.6 68 44.1
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 8.5e-06 53.9 58 41.4


User provided reference genes

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