Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 4.3e-92 341.3 169 100.0
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 6.9e-90 334.0 167 98.2
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 9.4e-71 270.4 166 83.7
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 4.1e-58 228.4 157 68.8
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 5.3e-58 228.0 163 63.8
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 7.0e-58 227.6 169 66.9
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 2.2e-56 222.6 164 65.9
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 1.1e-55 220.3 160 65.0
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 2.5e-55 219.2 161 64.0
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 3.2e-55 218.8 152 67.1
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 4.2e-55 218.4 160 64.4
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 5.5e-55 218.0 151 66.2
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 1.2e-54 216.9 164 62.2
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 3.6e-54 215.3 160 63.8
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 1.0e-53 213.8 172 59.9
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 1.0e-53 213.8 156 67.3
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 1.4e-53 213.4 146 65.8
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 1.8e-53 213.0 160 63.1
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 2.3e-53 212.6 166 59.0
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 3.0e-53 212.2 151 62.9
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 3.3e-52 208.8 154 62.3
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 4.4e-52 208.4 176 57.4
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 9.7e-52 207.2 145 65.5
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 9.7e-52 207.2 165 59.4
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 1.3e-51 206.8 148 64.9
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 1.7e-51 206.5 153 63.4
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 6.3e-51 204.5 144 66.0
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 2.4e-50 202.6 135 67.4
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 7.0e-50 201.1 135 66.7
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 7.0e-50 201.1 140 67.9
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 9.1e-50 200.7 153 62.1
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 2.7e-49 199.1 147 61.9
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 3.5e-49 198.7 144 63.9
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 3.5e-49 198.7 156 60.3
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 1.3e-48 196.8 156 59.6
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 1.7e-48 196.4 162 58.6
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 2.2e-48 196.1 156 59.6
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 2.2e-48 196.1 136 64.0
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 2.9e-48 195.7 139 64.0
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 8.5e-48 194.1 155 61.9
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 1.1e-47 193.7 124 70.2
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 2.5e-47 192.6 142 61.3
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 3.2e-47 192.2 155 58.1
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 3.2e-47 192.2 145 64.8
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 7.2e-47 191.0 155 56.8
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 7.2e-47 191.0 140 62.1
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 7.2e-47 191.0 165 57.6
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 9.4e-47 190.7 163 57.7
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 1.2e-46 190.3 161 60.2
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 2.1e-46 189.5 155 56.1
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 3.6e-46 188.7 153 57.5
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 3.6e-46 188.7 161 56.5
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 8.0e-46 187.6 158 60.1
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 1.8e-45 186.4 155 57.4
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 2.3e-45 186.0 161 59.6
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 2.3e-45 186.0 152 58.6
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 1.2e-44 183.7 145 57.2
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 1.2e-44 183.7 150 60.0
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 3.4e-44 182.2 158 59.5
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 5.7e-44 181.4 145 56.6
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 9.8e-44 180.6 145 56.6
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 1.3e-43 180.3 155 54.2
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 1.7e-43 179.9 157 57.3
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 3.7e-43 178.7 145 56.6
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 3.7e-43 178.7 150 56.0
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 4.8e-43 178.3 145 55.2
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 4.8e-43 178.3 145 55.2
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 8.3e-43 177.6 161 52.2
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 1.4e-42 176.8 145 54.5
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 1.4e-42 176.8 157 54.8
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 2.4e-42 176.0 137 58.4
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 3.1e-42 175.6 157 52.9
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 3.1e-42 175.6 140 57.1
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 1.6e-41 173.3 139 57.6
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 4.5e-41 171.8 137 56.9
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 4.5e-41 171.8 137 56.9
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 7.7e-41 171.0 155 52.9
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 7.7e-41 171.0 137 58.4
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 1.0e-40 170.6 147 53.7
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 1.0e-40 170.6 155 52.9
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 1.7e-40 169.9 160 52.5
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 6.6e-40 167.9 156 52.6
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 1.1e-39 167.2 161 49.7
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 4.2e-39 165.2 140 55.0
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 4.7e-38 161.8 161 50.9
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 4.7e-38 161.8 162 48.8
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 8.0e-38 161.0 111 65.8
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 1.2e-36 157.1 110 64.5
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 2.6e-36 156.0 130 53.8
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 9.8e-36 154.1 140 53.6
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 8.3e-35 151.0 155 46.5
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 1.1e-34 150.6 155 46.5
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 1.4e-34 150.2 155 50.3
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 4.1e-34 148.7 141 51.8
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 9.2e-34 147.5 159 48.4
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 2.9e-32 142.5 120 57.5
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 4.3e-31 138.7 115 56.5
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 1.2e-30 137.1 93 67.7
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 4.7e-30 135.2 164 44.5
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 5.2e-29 131.7 139 48.2
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 2.9e-27 125.9 163 44.2
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 6.6e-24 114.8 128 39.8
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 1.1e-23 114.0 84 60.7
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 1.5e-23 113.6 190 36.3
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 1.9e-23 113.2 137 43.1
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 2.1e-22 109.8 144 38.9
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 4.0e-21 105.5 213 32.4
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 2.9e-19 99.4 64 68.8
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 2.9e-19 99.4 82 54.9
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 9.5e-15 84.3 151 33.1
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 8.9e-13 77.8 62 59.7
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 5.8e-12 75.1 105 36.2
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 1.9e-10 70.1 131 31.3
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 2.4e-10 69.7 82 45.1
TPR.G24917 Trifolium pratense HOM05D006750 ORTHO05D008426 9.2e-10 67.8 48 64.6
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 1.6e-09 67.0 152 31.6
PRCOL_00005799 Prasinoderma coloniale HOM05D006750 ORTHO05D008426 4.3e-07 58.9 141 31.2
MBI18_g36125_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 9.5e-07 57.8 53 43.4
Cfa010446 Carpinus fangiana HOM05D006750 ORTHO05D008426 1.2e-06 57.4 42 57.1


User provided reference genes

Program Settings