Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.0e-111 406.8 202 100.0
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 1.1e-89 333.6 206 84.0
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 9.1e-89 330.5 206 83.5
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 5.4e-81 304.7 204 76.0
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 5.9e-80 301.2 203 77.3
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 3.8e-79 298.5 209 74.2
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 1.9e-78 296.2 204 74.5
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 4.2e-78 295.0 204 74.5
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 2.8e-77 292.4 206 74.3
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 6.1e-77 291.2 204 75.5
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 1.8e-76 289.7 204 74.0
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 2.3e-76 289.3 207 72.0
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 8.9e-76 287.3 207 73.4
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 3.4e-75 285.4 203 73.4
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.4e-75 285.0 208 73.1
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 5.7e-75 284.6 217 71.9
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.7e-75 284.6 203 74.4
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 5.7e-75 284.6 205 72.7
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 1.7e-74 283.1 207 70.5
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 2.2e-74 282.7 205 73.7
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 2.2e-74 282.7 207 72.5
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 4.9e-74 281.6 202 73.3
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 4.9e-74 281.6 205 72.2
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 6.3e-74 281.2 206 72.3
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 6.3e-74 281.2 204 74.0
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 8.3e-74 280.8 200 72.0
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 1.8e-73 279.6 204 70.1
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 3.2e-73 278.9 205 72.7
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 3.2e-73 278.9 204 71.1
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 5.4e-73 278.1 205 73.2
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 5.4e-73 278.1 203 71.4
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 5.4e-73 278.1 200 71.5
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 1.6e-72 276.6 207 71.5
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 2.0e-72 276.2 201 72.1
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 2.7e-72 275.8 202 70.3
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 4.5e-72 275.0 203 72.4
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 2.9e-71 272.3 200 73.0
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 5.0e-71 271.6 200 70.0
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 6.6e-71 271.2 209 68.9
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 1.1e-70 270.4 201 70.6
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 3.3e-70 268.9 202 69.8
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 7.3e-70 267.7 204 70.1
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 1.6e-69 266.5 200 70.0
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 1.6e-69 266.5 206 68.4
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 2.1e-69 266.2 195 69.7
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 2.8e-69 265.8 201 70.6
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 6.1e-69 264.6 205 68.3
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 1.0e-68 263.8 201 69.7
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 2.3e-68 262.7 202 68.8
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 2.3e-68 262.7 200 67.5
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 2.3e-68 262.7 200 69.0
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 3.1e-68 262.3 199 69.8
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 4.0e-68 261.9 190 72.1
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 5.2e-68 261.5 205 68.3
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 8.9e-68 260.8 202 70.3
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 1.2e-67 260.4 200 68.5
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 1.5e-67 260.0 202 66.8
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 2.0e-67 259.6 139 88.5
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 2.6e-67 259.2 204 68.6
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 3.4e-67 258.8 202 68.3
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 5.8e-67 258.1 206 68.4
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 5.8e-67 258.1 198 68.2
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 7.5e-67 257.7 209 67.5
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 9.8e-67 257.3 131 90.1
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 1.3e-66 256.9 202 67.3
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 1.7e-66 256.5 186 72.0
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 1.7e-66 256.5 204 67.6
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 3.7e-66 255.4 196 69.4
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 4.9e-66 255.0 203 66.5
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 1.4e-65 253.4 201 67.2
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 1.4e-65 253.4 201 67.2
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 5.4e-65 251.5 201 66.7
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 1.6e-64 250.0 202 65.3
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 2.7e-64 249.2 211 64.9
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 3.5e-64 248.8 149 81.9
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.5e-64 248.8 149 81.9
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 4.6e-64 248.4 201 65.2
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 6.0e-64 248.1 191 67.5
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 1.3e-63 246.9 202 66.3
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 3.0e-63 245.7 191 66.5
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 3.0e-63 245.7 213 65.3
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.9e-63 245.4 149 81.2
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 5.0e-63 245.0 206 65.0
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 5.0e-63 245.0 201 64.7
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 5.0e-63 245.0 187 69.5
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 6.6e-63 244.6 195 66.2
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.5e-62 243.4 201 64.7
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 2.5e-62 242.7 191 67.0
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 7.3e-62 241.1 194 66.0
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 1.6e-61 240.0 183 68.3
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 1.6e-61 240.0 207 63.3
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 2.1e-61 239.6 212 60.8
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 2.8e-61 239.2 192 65.6
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 8.0e-61 237.7 204 65.2
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.1e-60 237.3 201 64.7
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 2.3e-60 236.1 151 74.8
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 3.4e-59 232.3 201 63.7
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 1.3e-58 230.3 201 63.2
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.7e-58 228.8 148 77.0
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 3.7e-58 228.8 201 63.2
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 8.3e-58 227.6 126 84.1
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 7.1e-57 224.6 194 62.4
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 1.2e-56 223.8 111 89.2
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 2.1e-56 223.0 131 79.4
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 2.1e-56 223.0 126 84.1
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 7.8e-56 221.1 204 62.3
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 3.6e-53 212.2 139 76.3
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 3.6e-53 212.2 192 61.5
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 8.1e-53 211.1 201 59.7
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 5.2e-52 208.4 129 74.4
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 4.4e-51 205.3 204 55.9
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 2.2e-50 203.0 150 72.0
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 2.9e-50 202.6 107 87.9
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 1.9e-49 199.9 119 78.2
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 2.4e-49 199.5 201 56.7
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 4.6e-48 195.3 158 67.7
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 5.1e-47 191.8 101 89.1
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.5e-46 190.3 91 93.4
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 5.4e-41 171.8 158 60.1
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 1.5e-35 153.7 207 49.8
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 4.9e-34 148.7 82 80.5
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 9.6e-30 134.4 101 57.4
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 1.4e-25 120.6 126 57.1
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 1.9e-25 120.2 59 89.8
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 5.4e-25 118.6 207 44.4
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 1.6e-24 117.1 120 55.8
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 6.7e-23 111.7 93 53.8
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 2.1e-21 106.7 127 45.7
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 3.2e-17 92.8 83 55.4
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.1e-15 85.5 60 68.3
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 9.6e-14 81.3 100 41.0
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 1.0e-10 71.2 43 79.1
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 8.4e-10 68.2 112 39.3
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.7e-08 63.2 106 45.3
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 5.1e-07 58.9 34 73.5
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 8.7e-07 58.2 28 85.7
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 1.5e-06 57.4 83 42.2


User provided reference genes

Program Settings