Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G110900 Populus trichocarpa HOM05D003417 ORTHO05D003925 6.8e-78 293.9 145 100.0
Potri.012G111000 Populus trichocarpa HOM05D003417 ORTHO05D003925 1.6e-31 139.8 164 49.4
Potri.015G109100 Populus trichocarpa HOM05D003417 ORTHO05D003925 2.1e-31 139.4 164 51.2
Manes.14G043500 Manihot esculenta HOM05D003417 ORTHO05D003925 2.6e-29 132.5 165 51.5
Ciclev10032920m.g Citrus clementina HOM05D003417 ORTHO05D003925 1.8e-25 119.8 171 43.3
TAR622G1221 Trochodendron aralioides HOM05D003417 ORTHO05D003925 2.3e-25 119.4 164 45.1
Dinv13701 Davidia involucrata HOM05D003417 ORTHO05D003925 1.1e-24 117.1 163 44.2
Duzib205G0326 Durio zibethinus HOM05D003417 ORTHO05D003925 1.4e-22 110.2 165 44.8
PGR142G3056 Punica granatum HOM05D003417 ORTHO05D003925 2.4e-22 109.4 161 40.4
PGR142G0654 Punica granatum HOM05D003417 ORTHO05D003925 9.0e-22 107.5 160 40.6
Manes.06G128100 Manihot esculenta HOM05D003417 ORTHO05D003925 4.5e-21 105.1 165 41.2
Thecc.03G142400 Theobroma cacao HOM05D003417 ORTHO05D003925 1.7e-20 103.2 165 41.8
Migut.I00656 Erythranthe guttata HOM05D003417 ORTHO05D003925 8.4e-20 100.9 166 38.0
CARHR205820 Cardamine hirsuta HOM05D003417 ORTHO05D003925 1.4e-19 100.1 162 38.3
THA.LOC104801745 Tarenaya hassleriana HOM05D003417 ORTHO05D003925 1.9e-19 99.8 155 41.3
COL.COLO4_37277 Corchorus olitorius HOM05D003417 ORTHO05D003925 3.2e-19 99.0 168 42.3
Haze_07083 Corylus avellana HOM05D003417 ORTHO05D003925 3.2e-19 99.0 146 44.5
MD14G1144900 Malus domestica HOM05D003417 ORTHO05D003925 2.1e-18 96.3 165 41.2
Medtr8g096020 Medicago truncatula HOM05D003417 ORTHO05D003925 2.7e-18 95.9 151 38.4
Carub.0006s0630 Capsella rubella HOM05D003417 ORTHO05D003925 3.5e-18 95.5 163 38.0
TPR.G12773 Trifolium pratense HOM05D003417 ORTHO05D003925 3.5e-18 95.5 150 40.7
Ca_16817_v3 Cicer arietinum L. HOM05D003417 ORTHO05D003925 4.6e-18 95.1 154 39.0
HanXRQChr16g0499151 Helianthus annuus HOM05D003417 ORTHO05D003925 4.6e-18 95.1 166 39.8
Lj4g0015426 Lotus japonicus HOM05D003417 ORTHO05D003925 4.6e-18 95.1 169 39.6
FAN08G0820 Fragaria x ananassa HOM05D003417 ORTHO05D003925 6.0e-18 94.7 158 39.9
Sp6g35550 Schrenkiella parvula HOM05D003417 ORTHO05D003925 6.0e-18 94.7 161 36.0
VMungo0251G0234 Vigna mungo HOM05D000001 ORTHO05D010118 6.0e-18 94.7 147 38.8
AT5G07330 Arabidopsis thaliana HOM05D003417 ORTHO05D003925 7.9e-18 94.4 162 37.7
BcaC06g32447 Brassica carinata HOM05D003417 ORTHO05D003925 7.9e-18 94.4 162 37.0
GSVIVG01008665001 Vitis vinifera HOM05D003417 ORTHO05D003925 7.9e-18 94.4 165 42.4
CiPaw.05G099200 Carya illinoinensis HOM05D003417 ORTHO05D003925 1.0e-17 94.0 162 37.0
Eucgr.G02781 Eucalyptus grandis HOM05D003417 ORTHO05D003925 1.0e-17 94.0 162 38.3
Aa31LG3G19040 Aethionema arabicum HOM05D003417 ORTHO05D003925 1.3e-17 93.6 149 38.3
MELO3C006933.2 Cucumis melo HOM05D003417 ORTHO05D003925 1.3e-17 93.6 151 41.7
HanXRQChr16g0499291 Helianthus annuus HOM05D003417 ORTHO05D003925 1.3e-17 93.6 169 39.6
arahy.Tifrunner.gnm1.ann1.4S2L0G Arachis hypogaea HOM05D003417 ORTHO05D003925 1.8e-17 93.2 164 37.8
Glyma.05G199300 Glycine max HOM05D003417 ORTHO05D003925 2.3e-17 92.8 165 38.2
Lj5A85T112 Lonicera japonica HOM05D003417 ORTHO05D003925 2.3e-17 92.8 147 43.5
arahy.Tifrunner.gnm1.ann1.J517PC Arachis hypogaea HOM05D003417 ORTHO05D003925 3.0e-17 92.4 164 39.6
Cc00_g07820 Coffea canephora HOM05D003417 ORTHO05D003925 3.0e-17 92.4 163 38.7
Thhalv10015935m.g Eutrema salsugineum HOM05D003417 ORTHO05D003925 3.0e-17 92.4 157 36.3
TWI23G0415 Tripterygium wilfordii HOM05D003417 ORTHO05D003925 3.0e-17 92.4 155 37.4
Nn8g40516 Nelumbo nucifera HOM05D003417 ORTHO05D003925 3.9e-17 92.0 161 37.3
FAN04G2197 Fragaria x ananassa HOM05D000001 ORTHO05D010118 5.1e-17 91.7 154 40.3
SGA_v2.0_scaffold37G14660 Striga asiatica HOM05D000001 ORTHO05D010118 5.1e-17 91.7 161 34.8
Phvul.002G280400 Phaseolus vulgaris HOM05D003417 ORTHO05D003925 6.7e-17 91.3 157 36.3
RcHm_v2.0_Chr7g0188371 Rosa chinensis HOM05D003417 ORTHO05D003925 6.7e-17 91.3 162 40.1
QL10p000213 Quercus lobata HOM05D003417 ORTHO05D003925 1.1e-16 90.5 140 42.1
Cpa.g.sc13.191 Carica papaya HOM05D003417 ORTHO05D003925 1.9e-16 89.7 160 37.5
CsaV3_3G017500 Cucumis sativus L. HOM05D003417 ORTHO05D003925 1.9e-16 89.7 163 38.7
Gorai.003G117600 Gossypium raimondii HOM05D003417 ORTHO05D003925 2.5e-16 89.4 160 39.4
Actinidia36848 Actinidia chinensis HOM05D003417 ORTHO05D003925 3.3e-16 89.0 165 37.6
Gohir.D03G111100 Gossypium hirsutum HOM05D003417 ORTHO05D003925 3.3e-16 89.0 160 38.8
Lsat_1_v5_gn_4_85481 Lactuca sativa HOM05D003417 ORTHO05D003925 3.3e-16 89.0 161 40.4
SalBow7G0995 Salvia bowleyana HOM05D003417 ORTHO05D003925 3.3e-16 89.0 161 36.6
DCAR_025634 Daucus carota HOM05D003417 ORTHO05D003925 4.3e-16 88.6 163 37.4
Gohir.A03G055500 Gossypium hirsutum HOM05D003417 ORTHO05D003925 4.3e-16 88.6 160 38.8
PGSC0003DMG400014233 Solanum tuberosum HOM05D003417 ORTHO05D003925 4.3e-16 88.6 155 40.0
AL6G17600 Arabidopsis lyrata HOM05D003417 ORTHO05D003925 5.7e-16 88.2 162 35.8
Lalb_Chr07g0183911 Lupinus albus HOM05D003417 ORTHO05D003925 5.7e-16 88.2 171 35.1
Sopen03g036950 Solanum pennellii HOM05D003417 ORTHO05D003925 7.4e-16 87.8 154 38.3
Nitab4.5_0000976g0210 Nicotiana tabacum HOM05D003417 ORTHO05D003925 1.3e-15 87.0 163 36.2
Aqoxy5G01345 Aquilegia oxysepala HOM05D003417 ORTHO05D003925 2.2e-15 86.3 80 57.5
A10p29100 Brassica napus HOM05D003417 ORTHO05D003925 2.2e-15 86.3 153 36.6
BraA10t44959Z Brassica rapa HOM05D003417 ORTHO05D003925 2.2e-15 86.3 153 36.6
Eucgr.G01269 Eucalyptus grandis HOM05D003417 ORTHO05D003925 2.2e-15 86.3 161 34.2
MD00G1076100 Malus domestica HOM05D003417 ORTHO05D003925 2.8e-15 85.9 148 41.9
Nn4g22090 Nelumbo nucifera HOM05D003417 ORTHO05D003925 2.8e-15 85.9 165 37.0
Psat7g040000 Pisum sativum HOM05D003417 ORTHO05D003925 2.8e-15 85.9 153 37.3
SalBow1G3329 Salvia bowleyana HOM05D003417 ORTHO05D003925 2.8e-15 85.9 144 38.9
Cc04_g05680 Coffea canephora HOM05D003417 ORTHO05D003925 3.7e-15 85.5 168 41.1
C09p69490 Brassica napus HOM05D003417 ORTHO05D003925 6.3e-15 84.7 151 35.1
BolC9t59693H Brassica oleracea HOM05D003417 ORTHO05D003925 6.3e-15 84.7 151 35.1
Solyc03g118050.3 Solanum lycopersicum HOM05D003417 ORTHO05D003925 6.3e-15 84.7 153 37.9
Aqoxy5G03016 Aquilegia oxysepala HOM05D003417 ORTHO05D003925 1.8e-14 83.2 162 36.4
Oeu051179.2 Olea europaea HOM05D003417 ORTHO05D003925 1.8e-14 83.2 111 43.2
FvH4_5g09901 Fragaria vesca HOM05D003417 ORTHO05D003925 4.1e-14 82.0 146 36.3
Sed0011159 Sechium edule HOM05D003417 ORTHO05D003925 4.1e-14 82.0 143 39.2
Peaxi162Scf00314g00746 Petunia axillaris HOM05D003417 ORTHO05D003925 5.3e-14 81.6 81 45.7
Nitab4.5_0010036g0010 Nicotiana tabacum HOM05D003417 ORTHO05D003925 6.9e-14 81.3 158 34.8
QL04p039539 Quercus lobata HOM05D003417 ORTHO05D003925 6.9e-14 81.3 162 35.8
CAN.G1008.44 Capsicum annuum HOM05D003417 ORTHO05D003925 9.0e-14 80.9 80 51.2
ECA232G4830 Erigeron canadensis HOM05D003417 ORTHO05D003925 9.0e-14 80.9 145 39.3
MBI07_g07554_MAGBIO Magnolia biondii HOM05D003417 ORTHO05D003925 1.2e-13 80.5 84 52.4
LjContig00408g0013061 Lotus japonicus HOM05D003417 ORTHO05D003925 2.0e-13 79.7 156 34.0
Thecc.02G189400 Theobroma cacao HOM05D003417 ORTHO05D003925 2.6e-13 79.3 161 32.9
AUR62036971 Chenopodium quinoa HOM05D003417 ORTHO05D003925 3.4e-13 79.0 81 50.6
Dinv04789 Davidia involucrata HOM05D003417 ORTHO05D003925 4.5e-13 78.6 158 34.8
Hma1.2p1_0738F.1_g210870 Hydrangea macrophylla HOM05D003417 ORTHO05D003925 5.9e-13 78.2 154 34.4
PSO017G5382 Papaver somniferum HOM05D003417 ORTHO05D003925 5.9e-13 78.2 166 33.1
Haze_12521 Corylus avellana HOM05D003417 ORTHO05D003925 7.7e-13 77.8 168 33.9
Duzib084G0051 Durio zibethinus HOM05D003417 ORTHO05D003925 7.7e-13 77.8 143 41.3
FAN13G2779 Fragaria x ananassa HOM05D003417 ORTHO05D003925 7.7e-13 77.8 83 49.4
Nitab4.5_0000976g0150 Nicotiana tabacum HOM05D003417 ORTHO05D003925 2.9e-12 75.9 80 45.0
PSO478G0254 Papaver somniferum HOM05D003417 ORTHO05D003925 2.9e-12 75.9 166 33.1
CANSAT56G4330 Cannabis sativa HOM05D003417 ORTHO05D003925 5.0e-12 75.1 165 30.9
SHI04103 Sapria himalayana HOM05D003417 ORTHO05D003925 5.0e-12 75.1 101 43.6
Aqoxy5G03015 Aquilegia oxysepala HOM05D003417 ORTHO05D003925 1.1e-11 73.9 76 50.0
Lalb_Chr05g0211061 Lupinus albus HOM05D003417 ORTHO05D003925 2.5e-11 72.8 165 30.9
Duzib248G0310 Durio zibethinus HOM05D003417 ORTHO05D003925 4.2e-11 72.0 162 33.3
vmacro16765 Vaccinium macrocarpon HOM05D003417 ORTHO05D003925 4.2e-11 72.0 119 37.0
vmacro16773 Vaccinium macrocarpon HOM05D003417 ORTHO05D003925 4.2e-11 72.0 119 37.0
Eucgr.J01143 Eucalyptus grandis HOM05D003417 ORTHO05D003925 5.5e-11 71.6 133 39.1
Sc11g0000040 Simmondsia chinensis HOM05D003417 ORTHO05D003925 5.5e-11 71.6 77 50.6
VMungo1215G0885 Vigna mungo HOM05D003417 ORTHO05D003925 7.2e-11 71.2 83 41.0
MELO3C022364.2 Cucumis melo HOM05D003417 ORTHO05D003925 9.4e-11 70.9 80 43.8
TAR371G0461 Trochodendron aralioides HOM05D003417 ORTHO05D003925 9.4e-11 70.9 159 35.2
Potri.003G160700 Populus trichocarpa HOM05D003417 ORTHO05D003925 1.2e-10 70.5 163 34.4
Prupe.5G139500 Prunus persica HOM05D003417 ORTHO05D003925 1.2e-10 70.5 148 35.1
CANSAT56G3475 Cannabis sativa HOM05D003417 ORTHO05D003925 1.6e-10 70.1 147 34.0
QL93p0170_0146 Quercus lobata HOM05D003417 ORTHO05D003925 1.6e-10 70.1 80 42.5
GSVIVG01001116001 Vitis vinifera HOM05D003417 ORTHO05D003925 2.1e-10 69.7 161 32.9
arahy.Tifrunner.gnm1.ann1.0A1KUW Arachis hypogaea HOM05D003417 ORTHO05D003925 2.7e-10 69.3 139 33.8
arahy.Tifrunner.gnm1.ann1.EYAH79 Arachis hypogaea HOM05D003417 ORTHO05D003925 2.7e-10 69.3 139 33.8
EL10Ac5g11264 Beta vulgaris HOM05D003417 ORTHO05D003925 2.7e-10 69.3 83 42.2
unitig_8.g3050 Utricularia gibba HOM05D003417 ORTHO05D003925 2.7e-10 69.3 79 43.0
CDE06G0345 Ceratophyllum demersum HOM05D003417 ORTHO05D003925 3.6e-10 68.9 130 36.2
FvH4_4g22290 Fragaria vesca HOM05D003417 ORTHO05D003925 3.6e-10 68.9 83 47.0
FAN07G2334 Fragaria x ananassa HOM05D003417 ORTHO05D003925 3.6e-10 68.9 83 47.0
FAN12G1056 Fragaria x ananassa HOM05D003417 ORTHO05D003925 3.6e-10 68.9 83 47.0
Psat2g190600 Pisum sativum HOM05D003417 ORTHO05D003925 3.6e-10 68.9 164 28.7
FAN17G1846 Fragaria x ananassa HOM05D003417 ORTHO05D003925 4.6e-10 68.6 83 45.8
Medtr5g006540 Medicago truncatula HOM05D003417 ORTHO05D003925 6.1e-10 68.2 83 41.0
Prupe.1G212400 Prunus persica HOM05D003417 ORTHO05D003925 6.1e-10 68.2 170 31.2
Sabra03G0116900 Salix brachista HOM05D003417 ORTHO05D003925 6.1e-10 68.2 176 32.4
Actinidia22106 Actinidia chinensis HOM05D003417 ORTHO05D003925 7.9e-10 67.8 160 34.4
CsaV3_6G007690 Cucumis sativus L. HOM05D003417 ORTHO05D003925 7.9e-10 67.8 80 43.8
PSO017G5943 Papaver somniferum HOM05D003417 ORTHO05D003925 1.0e-09 67.4 79 44.3
EL10Ac5g11265 Beta vulgaris HOM05D003417 ORTHO05D003925 1.4e-09 67.0 83 42.2
Atru.chr12.1453 Acer truncatum HOM05D003417 ORTHO05D003925 1.8e-09 66.6 148 32.4
PGSC0003DMG400014234 Solanum tuberosum HOM05D003417 ORTHO05D003925 3.0e-09 65.9 161 32.3
RcHm_v2.0_Chr4g0428531 Rosa chinensis HOM05D003417 ORTHO05D003925 5.1e-09 65.1 80 43.8
Dinv23241 Davidia involucrata HOM05D003417 ORTHO05D003925 6.7e-09 64.7 66 50.0
PGR142G4203 Punica granatum HOM05D003417 ORTHO05D003925 8.8e-09 64.3 120 37.5
Sed0017226 Sechium edule HOM05D003417 ORTHO05D003925 8.8e-09 64.3 160 31.2
Hund10020 Selenicereus undatus HOM05D003417 ORTHO05D003925 8.8e-09 64.3 77 42.9
SGA_v2.0_scaffold74G24631 Striga asiatica HOM05D000177 ORTHO05D002987 1.1e-08 63.9 62 51.6
Cc09_g02790 Coffea canephora HOM05D003417 ORTHO05D003925 1.5e-08 63.5 78 41.0
Sc12g0010610 Simmondsia chinensis HOM05D003417 ORTHO05D003925 1.5e-08 63.5 59 54.2
AUR62032202 Chenopodium quinoa HOM05D003417 ORTHO05D003925 2.0e-08 63.2 61 52.5
Os11g0533400 Oryza sativa ssp. japonica HOM05D003417 ORTHO05D003925 2.0e-08 63.2 84 45.2
Sc12g0010620 Simmondsia chinensis HOM05D003417 ORTHO05D003925 2.5e-08 62.8 70 52.9
TPR.G37882 Trifolium pratense HOM05D003417 ORTHO05D003925 3.3e-08 62.4 79 39.2
Solyc03g118060.3 Solanum lycopersicum HOM05D003417 ORTHO05D003925 4.3e-08 62.0 80 40.0
Sopen03g036960 Solanum pennellii HOM05D003417 ORTHO05D003925 4.3e-08 62.0 80 40.0
TWI36G0671 Tripterygium wilfordii HOM05D003417 ORTHO05D003925 5.7e-08 61.6 80 41.2
Ca_24409_v3 Cicer arietinum L. HOM05D003417 ORTHO05D003925 1.3e-07 60.5 92 34.8
Ah.02g114510 Amaranthus hybridus HOM05D003417 ORTHO05D003925 1.7e-07 60.1 83 42.2
MSTRG.440 Avicennia marina HOM05D003417 ORTHO05D003925 1.7e-07 60.1 78 46.2
CDE06G2784 Ceratophyllum demersum HOM05D000154 ORTHO05D000092 2.8e-07 59.3 126 33.3
THA.LOC104823574 Tarenaya hassleriana HOM05D003417 ORTHO05D003925 2.8e-07 59.3 84 36.9
Zm00001eb113490 Zea mays HOM05D003417 ORTHO05D003925 4.8e-07 58.5 80 42.5
AUR62000056 Chenopodium quinoa HOM05D003417 ORTHO05D003925 6.3e-07 58.2 79 40.5
MD16G1143400 Malus domestica HOM05D003417 ORTHO05D003925 6.3e-07 58.2 164 30.5
Glyma.01G236200 Glycine max HOM05D003417 ORTHO05D003925 1.1e-06 57.4 145 28.3
HPP92_008239 Vanilla planifolia HOM05D003417 ORTHO05D003925 1.1e-06 57.4 99 36.4
Migut.K01128 Erythranthe guttata HOM05D003417 ORTHO05D003925 1.8e-06 56.6 78 41.0
AUR62019228 Chenopodium quinoa HOM05D003417 ORTHO05D003925 2.4e-06 56.2 79 40.5
BcaC06g31933 Brassica carinata HOM05D003417 ORTHO05D003925 4.1e-06 55.5 84 35.7
AUR62036972 Chenopodium quinoa HOM05D003417 ORTHO05D003925 4.1e-06 55.5 75 41.3
AUR62044738 Chenopodium quinoa HOM05D003417 ORTHO05D003925 4.1e-06 55.5 75 41.3
Manes.09G173000 Manihot esculenta HOM05D003417 ORTHO05D003925 4.1e-06 55.5 122 29.5
Rhsim12G0015800 Rhododendron simsii HOM05D003417 ORTHO05D003925 5.3e-06 55.1 59 49.2


User provided reference genes

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