Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 2.9e-162 575.1 274 100.0
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 1.4e-156 556.2 272 97.1
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 3.1e-140 501.9 268 86.2
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.9e-137 492.7 258 86.0
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 9.3e-137 490.3 265 85.7
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 5.1e-135 484.6 263 84.0
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 5.1e-135 484.6 262 84.0
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 1.1e-134 483.4 258 86.0
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 4.3e-134 481.5 268 83.2
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 4.3e-134 481.5 263 84.0
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 9.7e-134 480.3 265 83.0
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 1.3e-133 479.9 265 82.6
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.3e-133 479.9 258 86.0
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 1.3e-133 479.9 267 83.1
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 2.2e-133 479.2 265 82.6
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 2.2e-133 479.2 269 82.5
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 2.2e-133 479.2 265 82.3
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.7e-133 478.4 263 83.3
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 1.4e-132 476.5 268 82.1
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 3.1e-132 475.3 261 82.8
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 3.1e-132 475.3 254 85.8
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 4.1e-132 474.9 265 81.1
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 4.1e-132 474.9 265 81.1
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 9.1e-132 473.8 258 83.3
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 9.1e-132 473.8 251 85.7
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 1.2e-131 473.4 258 81.8
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.2e-131 473.4 262 82.1
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 2.6e-131 472.2 268 81.3
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 5.9e-131 471.1 264 82.6
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.0e-130 470.3 251 84.9
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 1.0e-130 470.3 268 80.6
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 1.3e-130 469.9 268 82.8
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.3e-130 469.9 258 84.5
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.7e-130 469.5 258 83.7
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 2.9e-130 468.8 270 79.6
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 2.9e-130 468.8 270 79.6
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 6.5e-130 467.6 270 79.3
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 6.5e-130 467.6 265 79.2
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 8.5e-130 467.2 270 79.3
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.9e-129 466.1 271 81.5
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 1.9e-129 466.1 257 85.6
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 2.5e-129 465.7 266 80.5
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 4.2e-129 464.9 269 80.3
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 4.2e-129 464.9 271 81.2
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 7.2e-129 464.2 265 80.4
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 7.2e-129 464.2 251 84.9
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 9.4e-129 463.8 268 80.6
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.2e-128 463.4 270 78.1
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.2e-128 463.4 268 79.9
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.2e-128 463.4 255 83.9
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 1.2e-128 463.4 258 82.6
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.1e-128 462.6 271 80.8
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 2.7e-128 462.2 270 80.0
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 3.6e-128 461.8 258 81.8
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 4.6e-128 461.5 270 78.1
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 6.1e-128 461.1 266 79.7
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 6.1e-128 461.1 258 82.2
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 7.9e-128 460.7 272 79.4
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 1.8e-127 459.5 268 79.1
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 1.8e-127 459.5 267 79.4
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 2.3e-127 459.1 266 79.3
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 3.0e-127 458.8 268 79.1
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 5.1e-127 458.0 268 78.7
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 5.1e-127 458.0 258 79.5
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 5.1e-127 458.0 271 80.1
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 6.7e-127 457.6 277 78.3
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 6.7e-127 457.6 271 79.7
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 2.6e-126 455.7 273 79.5
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 7.4e-126 454.1 251 82.1
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 2.2e-125 452.6 264 79.5
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 2.2e-125 452.6 270 81.5
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 2.8e-125 452.2 246 84.1
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 4.8e-125 451.4 263 79.5
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 4.8e-125 451.4 266 77.4
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 8.2e-125 450.7 273 78.0
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.1e-124 450.3 270 81.1
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.1e-124 448.7 264 78.8
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 3.1e-124 448.7 256 80.1
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 5.3e-124 448.0 261 79.3
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 9.1e-124 447.2 268 76.9
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.2e-123 446.8 270 77.4
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 3.4e-123 445.3 272 76.1
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 7.7e-123 444.1 266 75.9
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 1.3e-122 443.4 260 79.6
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 5.0e-122 441.4 270 75.6
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.1e-120 436.0 258 76.4
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 2.7e-120 435.6 261 75.1
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 1.8e-119 433.0 264 75.8
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.3e-119 432.6 241 83.0
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 3.9e-119 431.8 259 76.4
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 8.8e-119 430.6 253 77.1
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.5e-118 429.9 277 72.2
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 2.0e-118 429.5 248 77.8
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 9.7e-118 427.2 291 69.1
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 3.1e-116 422.2 267 75.7
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 4.1e-116 421.8 259 75.7
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.5e-115 418.7 288 67.7
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 4.5e-115 418.3 269 73.6
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 7.7e-115 417.5 271 72.7
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 7.7e-115 417.5 241 78.4
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.7e-114 416.4 286 68.2
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 4.2e-113 411.8 233 78.1
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 7.2e-113 411.0 258 75.2
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.6e-112 409.8 285 68.8
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 2.7e-112 409.1 268 74.3
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 6.3e-109 397.9 292 67.8
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 1.4e-108 396.7 235 77.9
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 4.1e-108 395.2 229 74.7
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 1.6e-107 393.3 208 85.1
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.7e-107 392.5 223 81.2
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 4.5e-107 391.7 226 79.2
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 3.8e-106 388.7 222 79.3
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 5.0e-106 388.3 229 73.4
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 2.6e-102 375.9 257 65.4
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.7e-101 373.2 239 68.2
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 3.1e-100 369.0 242 66.9
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 2.0e-99 366.3 258 67.8
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 7.7e-99 364.4 224 70.1
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 6.5e-98 361.3 241 66.8
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 1.0e-95 354.0 191 81.7
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 1.8e-95 353.2 229 72.9
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.2e-94 350.5 218 74.8
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.2e-91 340.5 305 56.1
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 8.6e-90 334.3 166 89.2
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.6e-86 322.8 335 50.4
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 9.8e-86 320.9 278 57.6
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.3e-82 310.5 196 69.9
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 1.7e-82 310.1 181 79.0
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 1.1e-81 307.4 215 59.5
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 8.0e-80 301.2 160 85.0
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 9.5e-73 277.7 157 81.5
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 7.8e-67 258.1 161 75.8
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.4e-63 246.5 131 82.4
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 1.5e-62 243.8 240 54.2
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.0e-62 243.4 213 59.6
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.2e-51 207.6 119 78.2
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.5e-51 206.1 124 75.0
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.3e-34 150.2 105 70.5
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.5e-28 130.2 82 76.8
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 7.1e-28 128.6 72 81.9
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 7.1e-28 128.6 82 74.4
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.5e-25 120.2 66 74.2
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 8.2e-24 115.2 66 78.8
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 2.0e-22 110.5 90 64.4
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 5.9e-22 109.0 65 70.8
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 3.6e-19 99.8 52 82.7
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 2.3e-18 97.1 84 57.1
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 5.7e-17 92.4 60 73.3
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 3.7e-16 89.7 85 60.0
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 1.7e-13 80.9 43 74.4
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 9.4e-12 75.1 57 64.9
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 1.4e-10 71.2 52 65.4
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 8.8e-10 68.6 48 66.7
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 4.4e-09 66.2 55 52.7
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.2e-08 63.9 67 47.8
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 7.7e-06 55.5 49 49.0


User provided reference genes

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