Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 8.0e-196 686.8 321 100.0
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 1.5e-178 629.4 319 90.6
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 1.1e-152 543.5 321 77.3
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 4.1e-152 541.6 321 77.3
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 4.6e-151 538.1 321 75.1
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 4.6e-151 538.1 320 75.6
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 6.0e-151 537.7 320 77.2
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 7.8e-151 537.3 319 75.9
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 7.8e-151 537.3 320 75.0
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 7.8e-151 537.3 320 76.9
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 7.8e-151 537.3 321 76.3
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 1.7e-150 536.2 319 75.9
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 5.1e-150 534.6 320 76.6
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 5.1e-150 534.6 320 76.6
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 6.6e-150 534.3 320 76.9
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.5e-149 533.1 320 76.2
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 1.5e-149 533.1 320 75.3
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 2.5e-149 532.3 318 76.4
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 3.3e-149 531.9 322 75.5
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 4.3e-149 531.6 320 74.7
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 7.3e-149 530.8 318 75.8
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 1.2e-148 530.0 320 75.6
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 1.2e-148 530.0 321 74.8
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 1.6e-148 529.6 320 74.7
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 1.4e-147 526.6 319 75.9
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 1.4e-147 526.6 323 75.2
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 1.8e-147 526.2 320 73.8
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 3.1e-147 525.4 319 73.4
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 6.8e-147 524.2 318 74.5
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 2.6e-146 522.3 318 74.5
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 2.6e-146 522.3 319 73.4
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 3.4e-146 521.9 319 74.3
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 4.4e-146 521.5 319 74.0
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 5.8e-146 521.2 316 75.6
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 7.6e-146 520.8 321 73.2
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.4e-144 516.5 311 74.9
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 3.2e-144 515.4 320 71.2
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 4.2e-144 515.0 319 71.5
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 5.4e-144 514.6 318 73.9
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 5.4e-144 514.6 320 72.8
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 1.2e-143 513.5 319 74.3
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 4.6e-143 511.5 315 74.3
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 6.0e-143 511.1 321 73.5
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 7.8e-143 510.8 320 72.5
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 1.0e-142 510.4 319 72.7
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 1.0e-142 510.4 318 74.2
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 1.3e-142 510.0 307 73.6
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.7e-142 509.6 321 73.8
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 5.1e-142 508.1 319 72.1
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 6.6e-142 507.7 321 74.1
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 6.6e-142 507.7 318 73.3
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 8.7e-142 507.3 314 72.6
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 1.1e-141 506.9 318 73.9
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 2.5e-141 505.8 321 72.9
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 3.3e-141 505.4 318 71.1
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 3.3e-141 505.4 314 70.1
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 3.3e-141 505.4 318 72.0
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 5.6e-141 504.6 314 72.6
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 5.6e-141 504.6 318 72.6
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 5.6e-141 504.6 320 70.9
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 7.3e-141 504.2 307 73.9
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 9.6e-141 503.8 318 73.6
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 1.2e-140 503.4 319 72.7
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.6e-140 503.1 318 72.3
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 2.1e-140 502.7 321 70.1
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 3.6e-140 501.9 308 73.7
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 6.2e-140 501.1 306 73.9
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 8.1e-140 500.7 314 71.3
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 8.1e-140 500.7 318 72.6
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 1.4e-139 500.0 307 73.9
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 2.4e-139 499.2 319 70.5
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 2.4e-139 499.2 320 71.9
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 3.1e-139 498.8 319 70.2
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 4.0e-139 498.4 318 72.0
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 4.0e-139 498.4 308 73.4
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 5.3e-139 498.0 320 70.6
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 5.3e-139 498.0 306 74.5
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 6.9e-139 497.7 309 74.8
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 9.0e-139 497.3 315 72.1
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 9.0e-139 497.3 318 71.1
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 9.0e-139 497.3 309 72.2
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 1.2e-138 496.9 320 70.6
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 2.0e-138 496.1 320 70.3
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.4e-138 495.4 314 69.7
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 3.4e-138 495.4 321 70.1
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 7.6e-138 494.2 319 71.8
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 9.9e-138 493.8 318 72.0
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 2.9e-137 492.3 318 69.2
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 1.1e-136 490.3 319 71.5
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 1.1e-136 490.3 315 71.4
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.1e-135 486.1 304 73.4
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 2.1e-135 486.1 306 71.6
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.7e-134 483.0 314 68.5
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.0e-134 482.3 318 69.5
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 3.0e-134 482.3 319 69.3
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 3.9e-134 481.9 309 69.9
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 1.1e-133 480.3 321 68.8
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 1.1e-133 480.3 321 68.2
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.5e-133 479.9 318 69.8
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 2.5e-133 479.2 321 66.7
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 3.3e-133 478.8 303 71.3
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 4.3e-133 478.4 301 73.1
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 5.6e-133 478.0 301 72.8
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 7.3e-133 477.6 303 71.0
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 3.6e-132 475.3 309 68.9
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.8e-132 474.9 311 69.5
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 6.2e-132 474.6 309 69.3
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 1.1e-131 473.8 303 70.6
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 9.0e-131 470.7 303 70.6
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 4.5e-130 468.4 302 68.5
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 4.5e-130 468.4 303 70.0
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 5.8e-130 468.0 321 66.7
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 1.7e-129 466.5 318 66.4
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 2.2e-129 466.1 304 69.7
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 2.2e-129 466.1 306 67.6
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 6.4e-129 464.5 304 69.4
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 2.4e-128 462.6 304 65.8
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 2.7e-127 459.1 304 68.8
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 6.0e-127 458.0 315 67.6
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 7.9e-127 457.6 304 69.1
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 7.9e-127 457.6 295 70.2
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 2.5e-120 436.0 294 69.0
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 1.6e-119 433.3 315 66.0
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 6.0e-119 431.4 319 62.4
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 7.9e-119 431.0 304 66.4
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 7.9e-119 431.0 328 60.4
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 6.7e-118 427.9 228 86.4
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 2.5e-117 426.0 315 64.8
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 2.5e-117 426.0 318 61.9
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 4.3e-117 425.2 287 67.6
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 1.3e-116 423.7 271 69.7
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.9e-113 412.5 318 62.6
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 2.9e-113 412.5 318 62.6
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 4.2e-112 408.7 309 58.9
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.5e-111 405.6 313 61.7
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 9.0e-107 391.0 306 58.5
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.3e-105 387.1 303 63.0
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 1.4e-102 377.1 308 55.8
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 5.7e-101 371.7 219 74.9
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 1.0e-97 360.9 306 53.9
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 1.0e-97 360.9 306 57.2
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 1.4e-86 323.9 308 49.7
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 5.2e-78 295.4 286 53.1
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 7.5e-69 265.0 177 70.6
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.3e-68 264.2 308 45.1
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 2.9e-65 253.1 134 88.1
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.0e-58 230.3 261 47.5
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 1.0e-49 201.4 129 68.2
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.9e-49 199.5 113 78.8
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 2.6e-45 186.8 318 35.5
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 5.2e-38 162.5 303 33.7
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 5.6e-32 142.5 248 36.3
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 5.8e-29 132.5 98 59.2
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 4.6e-26 122.9 339 27.7
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 5.6e-16 89.4 59 69.5
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 9.0e-14 82.0 74 55.4


User provided reference genes

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