Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.8e-190 669.1 343 100.0
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 2.3e-172 609.0 343 90.4
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.7e-159 566.2 344 85.2
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 1.2e-149 533.5 355 80.3
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 1.6e-117 426.8 344 66.3
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 1.0e-116 424.1 344 64.2
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 3.9e-116 422.2 346 64.5
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 6.7e-116 421.4 345 62.0
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 1.9e-115 419.9 344 63.7
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 3.3e-115 419.1 344 64.0
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.8e-113 413.3 344 63.1
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 3.1e-113 412.5 344 60.8
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 3.1e-113 412.5 344 62.2
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.2e-112 410.6 345 60.0
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.3e-111 407.1 345 63.2
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.5e-109 399.1 344 60.5
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 3.5e-109 399.1 354 60.7
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 1.0e-108 397.5 345 59.4
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 1.3e-108 397.1 344 61.3
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.1e-107 394.0 345 59.4
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.5e-107 393.7 344 61.6
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.3e-106 390.6 344 60.5
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 3.7e-106 389.0 344 60.5
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 8.2e-106 387.9 344 59.6
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 5.3e-105 385.2 308 66.9
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 9.0e-105 384.4 344 58.7
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 1.5e-104 383.6 346 59.5
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.0e-104 383.3 346 59.8
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.5e-104 382.1 343 56.9
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.3e-103 380.6 343 56.9
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.3e-103 380.6 343 56.9
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 5.0e-103 378.6 343 57.4
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.1e-101 373.2 345 58.0
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 7.9e-101 371.3 345 57.1
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.0e-100 370.9 344 54.7
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.0e-99 366.7 344 54.4
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.5e-99 366.3 344 58.4
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 9.7e-99 364.4 337 56.7
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.2e-98 363.2 344 58.4
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 2.4e-97 359.8 347 55.6
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.5e-96 357.1 343 52.5
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 2.0e-96 356.7 281 65.1
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.6e-96 356.3 344 57.8
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.0e-95 354.4 344 55.2
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.7e-95 353.6 352 55.7
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 5.0e-95 352.1 345 54.2
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 3.2e-94 349.4 344 55.2
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 2.7e-93 346.3 344 54.4
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.8e-92 343.6 344 52.0
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 1.1e-91 340.9 344 53.2
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.5e-91 340.5 346 52.3
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.0e-91 340.1 345 53.6
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.0e-91 340.1 345 53.6
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 5.7e-91 338.6 347 54.2
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 1.7e-90 337.0 344 52.9
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 2.2e-90 336.7 344 56.4
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 6.3e-90 335.1 345 54.8
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.1e-89 334.3 343 52.8
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 1.4e-89 334.0 343 53.6
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 2.4e-89 333.2 338 51.2
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 3.1e-89 332.8 343 53.1
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 3.1e-89 332.8 345 53.0
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 4.1e-89 332.4 346 52.3
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 7.0e-89 331.6 347 50.7
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 7.0e-89 331.6 346 50.9
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 7.0e-89 331.6 347 51.6
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.2e-88 330.9 318 55.7
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.5e-88 330.5 318 54.7
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 2.0e-88 330.1 345 52.8
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 2.6e-88 329.7 346 50.6
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 2.6e-88 329.7 344 52.6
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 3.5e-88 329.3 347 49.0
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 5.9e-88 328.6 345 53.0
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 8.5e-87 324.7 327 54.1
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 8.5e-87 324.7 345 51.6
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.4e-86 323.9 345 53.0
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 1.4e-86 323.9 345 51.9
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.9e-86 323.6 346 49.7
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 2.5e-86 323.2 344 51.2
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 3.2e-86 322.8 344 52.0
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 1.2e-85 320.9 344 51.2
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 3.6e-85 319.3 347 50.4
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 8.0e-85 318.2 353 52.1
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 1.4e-84 317.4 338 48.8
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 1.4e-84 317.4 338 53.3
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 3.9e-84 315.8 329 52.3
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 6.7e-84 315.1 324 52.5
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 3.3e-83 312.8 351 47.9
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 4.4e-83 312.4 344 47.7
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 7.4e-83 311.6 324 52.5
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 3.7e-82 309.3 344 49.1
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 4.8e-82 308.9 344 49.7
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 8.2e-82 308.1 345 50.4
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 1.4e-81 307.4 260 63.1
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 2.4e-81 306.6 344 50.0
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 5.3e-81 305.4 286 54.2
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 4.5e-80 302.4 335 49.9
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.7e-79 300.4 344 48.3
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 3.8e-79 299.3 346 48.6
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 6.5e-79 298.5 345 49.0
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 1.1e-78 297.7 345 50.1
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 2.5e-78 296.6 346 49.1
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 3.2e-78 296.2 345 46.1
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 5.5e-78 295.4 345 47.5
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 7.2e-78 295.0 346 48.6
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 7.2e-78 295.0 335 48.4
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 9.4e-78 294.7 344 46.5
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 2.1e-77 293.5 346 48.8
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 2.7e-77 293.1 343 49.3
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 6.1e-77 292.0 344 47.1
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.0e-76 291.2 285 52.3
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.0e-76 291.2 348 49.4
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 4.0e-76 289.3 308 51.0
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 5.7e-75 285.4 345 47.8
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 9.7e-75 284.6 339 48.4
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 8.3e-74 281.6 345 47.5
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.8e-73 280.4 338 47.9
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 2.4e-73 280.0 334 48.5
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 2.4e-73 280.0 343 46.4
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 3.1e-73 279.6 308 50.0
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 9.1e-73 278.1 349 46.1
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 3.8e-71 272.7 345 47.5
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 6.5e-71 271.9 346 46.2
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.1e-70 271.2 344 45.9
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 2.5e-70 270.0 344 46.2
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 1.2e-69 267.7 278 52.2
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 2.1e-69 266.9 343 46.9
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.4e-68 264.2 335 46.6
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 1.9e-62 243.8 277 47.3
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 2.1e-61 240.4 335 43.9
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 3.4e-59 233.0 330 42.4
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 6.3e-58 228.8 308 44.8
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 5.6e-54 215.7 336 39.3
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 1.0e-52 211.5 199 54.3
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 4.4e-51 206.1 343 38.5
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.8e-51 205.7 137 70.1
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.9e-50 203.4 343 38.2
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 4.6e-48 196.1 137 67.9
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.3e-47 194.5 342 38.0
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.9e-47 193.0 242 45.0
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.5e-46 191.0 129 69.0
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 2.9e-42 176.8 211 43.1
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 8.9e-36 155.2 336 35.7
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 8.3e-34 148.7 283 38.5
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 3.1e-28 130.2 103 57.3
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 9.3e-25 118.6 135 48.9
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 3.8e-10 70.1 204 32.4
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 6.4e-10 69.3 214 28.0
AagrBONN_evm.TU.Sc2ySwM_362.2194 Anthoceros agrestis HOM05D024261 ORTHO05D026617 6.7e-07 59.3 222 26.1
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 9.6e-06 55.5 39 64.1


User provided reference genes

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