Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G086300 Populus trichocarpa HOM05D007505 ORTHO05D009476 4.3e-92 341.3 167 100.0
Potri.012G086000 Populus trichocarpa HOM05D007505 ORTHO05D009476 2.8e-59 232.3 114 99.1
Sabra12G0061800 Salix brachista HOM05D007505 ORTHO05D009476 4.2e-47 191.8 127 78.7
Potri.015G084200 Populus trichocarpa HOM05D007505 ORTHO05D009476 1.4e-42 176.8 117 77.8
Sabra15G0107300 Salix brachista HOM05D007505 ORTHO05D009476 1.9e-36 156.4 121 74.4
Ciclev10022689m.g Citrus clementina HOM05D007505 ORTHO05D009476 7.2e-31 137.9 121 60.3
Manes.06G110400 Manihot esculenta HOM05D007505 ORTHO05D009476 3.6e-30 135.6 116 62.9
TWI23G0126 Tripterygium wilfordii HOM05D007505 ORTHO05D009476 3.0e-29 132.5 118 57.6
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 1.1e-28 130.6 125 54.4
CAN.G338.34 Capsicum annuum HOM05D007505 ORTHO05D009476 1.3e-27 127.1 117 54.7
Duzib205G0367 Durio zibethinus HOM05D007505 ORTHO05D009476 1.3e-27 127.1 106 62.3
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 2.2e-27 126.3 114 55.3
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 6.3e-27 124.8 118 53.4
Cpa.g.sc159.18 Carica papaya HOM05D007505 ORTHO05D009476 8.2e-27 124.4 121 54.5
Sopen03g031290 Solanum pennellii HOM05D007505 ORTHO05D009476 1.1e-26 124.0 118 53.4
Aqoxy5G03745 Aquilegia oxysepala HOM05D007505 ORTHO05D009476 1.4e-26 123.6 116 59.5
Cc04_g11490 Coffea canephora HOM05D007505 ORTHO05D009476 3.1e-26 122.5 116 52.6
Actinidia19362 Actinidia chinensis HOM05D007505 ORTHO05D009476 6.9e-26 121.3 119 56.3
Haze_07589 Corylus avellana HOM05D007505 ORTHO05D009476 6.9e-26 121.3 119 54.6
PGSC0003DMG400018186 Solanum tuberosum HOM05D007505 ORTHO05D009476 6.9e-26 121.3 118 51.7
Cfa019221 Carpinus fangiana HOM05D007505 ORTHO05D009476 1.2e-25 120.6 118 54.2
Atru.chr9.2580 Acer truncatum HOM05D007505 ORTHO05D009476 3.4e-25 119.0 103 60.2
vmacro19295 Vaccinium macrocarpon HOM05D007505 ORTHO05D009476 4.5e-25 118.6 120 55.0
Cfa019219 Carpinus fangiana HOM05D007505 ORTHO05D009476 5.9e-25 118.2 124 52.4
Oeu023645.1 Olea europaea HOM05D007505 ORTHO05D009476 2.2e-24 116.3 110 52.7
Thecc.03G026000 Theobroma cacao HOM05D007505 ORTHO05D009476 2.2e-24 116.3 118 53.4
TAR371G0969 Trochodendron aralioides HOM05D007505 ORTHO05D009476 2.2e-24 116.3 110 57.3
ClCG03G003000 Citrullus lanatus HOM05D007505 ORTHO05D009476 3.8e-24 115.5 118 56.8
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 8.5e-24 114.4 119 57.1
Hma1.2p1_0046F.1_g027150 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 1.1e-23 114.0 143 49.7
Eucgr.B00218 Eucalyptus grandis HOM05D007505 ORTHO05D009476 1.9e-23 113.2 125 49.6
Nitab4.5_0000003g0840 Nicotiana tabacum HOM05D007505 ORTHO05D009476 2.5e-23 112.8 113 53.1
MD14G1171300 Malus domestica HOM05D007505 ORTHO05D009476 4.2e-23 112.1 120 54.2
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 4.2e-23 112.1 95 58.9
Nitab4.5_0008713g0030 Nicotiana tabacum HOM05D007505 ORTHO05D009476 5.5e-23 111.7 117 54.7
FvH4_5g06310 Fragaria vesca HOM05D007505 ORTHO05D009476 9.4e-23 110.9 121 53.7
RcHm_v2.0_Chr7g0192551 Rosa chinensis HOM05D007505 ORTHO05D009476 1.2e-22 110.5 112 56.2
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 1.6e-22 110.2 121 53.7
FAN18G1005 Fragaria x ananassa HOM05D007505 ORTHO05D009476 2.1e-22 109.8 121 53.7
Rhsim08G0177900 Rhododendron simsii HOM05D007505 ORTHO05D009476 2.1e-22 109.8 121 49.6
FAN08G0495 Fragaria x ananassa HOM05D007505 ORTHO05D009476 2.7e-22 109.4 121 53.7
COL.COLO4_36758 Corchorus olitorius HOM05D007505 ORTHO05D009476 8.0e-22 107.8 134 49.3
AUR62028725 Chenopodium quinoa HOM05D007505 ORTHO05D009476 1.0e-21 107.5 125 48.0
Rhsim12G0168000 Rhododendron simsii HOM05D007505 ORTHO05D009476 1.0e-21 107.5 128 46.9
CSS0021026 Camellia sinensis var. sinensis HOM05D007505 ORTHO05D009476 1.4e-21 107.1 117 52.1
EL10Ac5g10655 Beta vulgaris HOM05D007505 ORTHO05D009476 2.3e-21 106.3 109 50.5
DCAR_021591 Daucus carota HOM05D007505 ORTHO05D009476 2.3e-21 106.3 120 50.0
PGR083G2149 Punica granatum HOM05D007505 ORTHO05D009476 3.0e-21 105.9 115 53.9
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 3.9e-21 105.5 121 47.1
Gorai.003G115400 Gossypium raimondii HOM05D007505 ORTHO05D009476 5.2e-21 105.1 128 46.9
QL10p006874 Quercus lobata HOM05D007505 ORTHO05D009476 5.2e-21 105.1 118 51.7
Oeu040858.1 Olea europaea HOM05D007505 ORTHO05D009476 6.7e-21 104.8 116 47.4
FAN13G2123 Fragaria x ananassa HOM05D007505 ORTHO05D009476 8.8e-21 104.4 121 52.1
Gohir.A03G057100 Gossypium hirsutum HOM05D007505 ORTHO05D009476 8.8e-21 104.4 128 46.9
Gohir.D03G109300 Gossypium hirsutum HOM05D007505 ORTHO05D009476 8.8e-21 104.4 128 46.9
MELO3C002298.2 Cucumis melo HOM05D007505 ORTHO05D009476 1.5e-20 103.6 110 55.5
Sed0000715 Sechium edule HOM05D007505 ORTHO05D009476 1.5e-20 103.6 116 52.6
AUR62008143 Chenopodium quinoa HOM05D007505 ORTHO05D009476 2.0e-20 103.2 125 45.6
Phvul.003G205200 Phaseolus vulgaris HOM05D007505 ORTHO05D009476 2.0e-20 103.2 119 43.7
Migut.O00159 Erythranthe guttata HOM05D007505 ORTHO05D009476 2.6e-20 102.8 152 37.5
Glyma.05G041700 Glycine max HOM05D007505 ORTHO05D009476 2.6e-20 102.8 121 45.5
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 4.4e-20 102.1 124 47.6
Nn3g16691 Nelumbo nucifera HOM05D007505 ORTHO05D009476 1.3e-19 100.5 103 54.4
PSO675G7842 Papaver somniferum HOM05D007505 ORTHO05D009476 1.3e-19 100.5 105 53.3
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 1.7e-19 100.1 117 53.0
TAR629G2155 Trochodendron aralioides HOM05D001124 ORTHO05D001004 1.7e-19 100.1 98 57.1
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 2.2e-19 99.8 112 51.8
Medtr4g104870 Medicago truncatula HOM05D007505 ORTHO05D009476 2.8e-19 99.4 120 47.5
PSO541G6268 Papaver somniferum HOM05D007505 ORTHO05D009476 2.8e-19 99.4 105 49.5
VMungo1215G0926 Vigna mungo HOM05D007505 ORTHO05D009476 2.8e-19 99.4 117 42.7
unitig_61.g26472 Utricularia gibba HOM05D007505 ORTHO05D009476 3.7e-19 99.0 126 41.3
ECA247G3499 Erigeron canadensis HOM05D007505 ORTHO05D009476 1.1e-18 97.4 122 45.9
CiPaw.11G019500 Carya illinoinensis HOM05D007505 ORTHO05D009476 1.4e-18 97.1 117 48.7
SalBow5G2951 Salvia bowleyana HOM05D007505 ORTHO05D009476 1.4e-18 97.1 95 54.7
CsaV3_1G008840 Cucumis sativus L. HOM05D007505 ORTHO05D009476 1.2e-17 94.0 108 50.9
HanXRQChr02g0035811 Helianthus annuus HOM05D007505 ORTHO05D009476 1.2e-17 94.0 119 44.5
Dinv20598 Davidia involucrata HOM05D007505 ORTHO05D009476 2.0e-17 93.2 73 67.1
SGA_v2.0_scaffold90G27839 Striga asiatica HOM05D007505 ORTHO05D009476 5.9e-17 91.7 95 51.6
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 7.7e-17 91.3 119 45.4
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 1.3e-16 90.5 110 50.0
arahy.Tifrunner.gnm1.ann1.33YNZL Arachis hypogaea HOM05D007505 ORTHO05D009476 2.9e-16 89.4 89 55.1
CANSAT80G2368 Cannabis sativa HOM05D007505 ORTHO05D009476 6.5e-16 88.2 122 46.7
ATR0824G199 Amborella trichopoda HOM05D007505 ORTHO05D009476 1.5e-15 87.0 77 58.4
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 1.5e-15 87.0 124 43.5
MBI16_g31776_MAGBIO Magnolia biondii HOM05D007505 ORTHO05D009476 1.9e-15 86.7 114 47.4
Lsat_1_v5_gn_1_27760 Lactuca sativa HOM05D007505 ORTHO05D009476 3.2e-15 85.9 118 44.1
Hma1.2p1_1092F.1_g255960 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 1.6e-14 83.6 93 49.5
BraA03t14621Z Brassica rapa HOM05D000464 ORTHO05D000408 2.7e-14 82.8 120 37.5
BcaNung07358 Brassica carinata HOM05D007505 ORTHO05D009476 3.6e-14 82.4 119 37.8
THA.LOC104825178 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 5.2e-13 78.6 99 44.4
Nn4g22591 Nelumbo nucifera HOM05D007505 ORTHO05D009476 8.8e-13 77.8 81 54.3
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 1.2e-12 77.4 111 38.7
BolC7t45867H Brassica oleracea HOM05D000464 ORTHO05D000408 1.2e-12 77.4 110 37.3
THA.LOC104800396 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.2e-12 77.4 98 45.9
THA.LOC104800397 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.2e-12 77.4 98 45.9
BraA01t01538Z Brassica rapa HOM05D007505 ORTHO05D009476 1.5e-12 77.0 127 36.2
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 4.4e-12 75.5 108 38.9
BcaC09g50839 Brassica carinata HOM05D007505 ORTHO05D009476 5.7e-12 75.1 108 38.9
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 5.7e-12 75.1 108 39.8
Carub.0007s1636 Capsella rubella HOM05D007505 ORTHO05D009476 7.5e-12 74.7 106 40.6
AT4G24700 Arabidopsis thaliana HOM05D007505 ORTHO05D009476 1.3e-11 73.9 108 40.7
A03p55480 Brassica napus HOM05D007505 ORTHO05D009476 2.2e-11 73.2 127 35.4
AL7G28500 Arabidopsis lyrata HOM05D007505 ORTHO05D009476 1.8e-10 70.1 125 35.2
CARHR232080 Cardamine hirsuta HOM05D007505 ORTHO05D009476 2.4e-10 69.7 108 37.0
Thhalv10026466m.g Eutrema salsugineum HOM05D007505 ORTHO05D009476 4.1e-10 68.9 109 35.8
Os02g0595200 Oryza sativa ssp. japonica HOM05D007505 ORTHO05D009476 1.0e-08 64.3 115 38.3
HPP92_004606 Vanilla planifolia HOM05D007505 ORTHO05D009476 3.2e-07 59.3 80 46.2
Zm00001eb246040 Zea mays HOM05D007505 ORTHO05D009476 4.2e-07 58.9 94 41.5
Duzib068G0261 Durio zibethinus HOM05D007505 ORTHO05D009476 9.4e-07 57.8 67 43.3
BcaC06g32867 Brassica carinata HOM05D007505 ORTHO05D009476 4.7e-06 55.5 107 33.6


User provided reference genes

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