Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 1.7e-147 526.2 300 100.0
Potri.015G083700 Populus trichocarpa HOM05D003422 ORTHO05D004263 4.2e-130 468.4 300 88.7
Sabra15G0107000 Salix brachista HOM05D003422 ORTHO05D004263 1.0e-128 463.8 304 87.2
Sabra12G0061400 Salix brachista HOM05D003422 ORTHO05D004263 8.1e-126 454.1 333 82.9
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 1.5e-108 396.7 298 71.5
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 1.0e-107 394.0 298 71.8
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 2.2e-107 392.9 298 71.8
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 1.9e-106 389.8 298 75.2
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 1.0e-104 384.0 301 73.1
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 6.7e-104 381.3 300 72.3
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 1.9e-103 379.8 299 71.9
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 3.3e-103 379.0 300 71.3
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 7.4e-103 377.9 300 75.3
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 7.4e-103 377.9 308 67.9
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 9.7e-103 377.5 297 70.4
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 2.2e-102 376.3 300 68.3
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 2.8e-102 375.9 298 75.5
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 4.8e-102 375.2 301 66.8
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 6.3e-102 374.8 301 68.8
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 1.1e-101 374.0 302 69.2
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 1.4e-101 373.6 300 75.0
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 5.3e-101 371.7 298 74.8
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 1.2e-100 370.5 298 66.8
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 4.5e-100 368.6 300 70.3
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 1.4e-98 363.6 304 65.8
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 1.4e-98 363.6 301 67.4
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 2.7e-97 359.4 288 68.1
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 1.0e-96 357.5 298 64.8
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 1.4e-96 357.1 299 65.6
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 5.1e-96 355.1 302 65.9
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 8.8e-96 354.4 301 68.1
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 8.8e-96 354.4 300 67.7
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 1.1e-95 354.0 295 70.2
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.5e-95 353.6 304 65.1
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 2.0e-95 353.2 293 65.9
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 2.5e-95 352.8 300 68.0
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 3.3e-95 352.4 306 64.1
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 5.7e-95 351.7 301 64.5
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 1.7e-94 350.1 301 64.5
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.7e-94 350.1 304 64.1
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 4.8e-94 348.6 303 64.0
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 1.4e-93 347.1 299 64.5
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 2.4e-93 346.3 297 64.3
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 3.1e-93 345.9 301 63.1
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 3.1e-93 345.9 297 64.3
Psat7g167080 Pisum sativum HOM05D003422 ORTHO05D004263 4.1e-93 345.5 304 65.8
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.5e-92 343.6 300 68.3
Duzib068G0444 Durio zibethinus HOM05D003422 ORTHO05D004263 1.0e-91 340.9 301 69.8
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 1.7e-91 340.1 302 66.6
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 2.9e-91 339.3 298 63.1
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 6.5e-91 338.2 242 72.3
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 1.1e-90 337.4 308 62.0
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 1.9e-90 336.7 292 66.1
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.5e-90 336.3 297 66.3
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 4.2e-90 335.5 302 65.9
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 1.2e-89 334.0 296 62.5
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 2.1e-89 333.2 299 65.9
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 2.7e-89 332.8 301 61.8
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 7.9e-89 331.3 224 79.9
Gohir.A12G199400 Gossypium hirsutum HOM05D003422 ORTHO05D004263 1.8e-88 330.1 308 67.2
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 1.8e-88 330.1 303 61.7
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 3.9e-88 328.9 306 60.5
COL.COLO4_05559 Corchorus olitorius HOM05D003422 ORTHO05D004263 6.7e-88 328.2 301 67.4
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 6.7e-88 328.2 305 66.2
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.6e-87 326.2 301 66.8
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.2e-86 323.2 300 64.0
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 3.7e-86 322.4 288 62.8
Gohir.D12G202200 Gossypium hirsutum HOM05D003422 ORTHO05D004263 6.3e-86 321.6 305 67.5
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 6.3e-86 321.6 303 67.7
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 8.2e-86 321.2 302 65.9
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 3.1e-85 319.3 303 66.7
Thecc.03G025100 Theobroma cacao HOM05D003422 ORTHO05D004263 2.0e-84 316.6 305 66.9
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 2.6e-84 316.2 292 61.6
Medtr2g103560 Medicago truncatula HOM05D003422 ORTHO05D004263 3.5e-84 315.8 333 60.4
Ca_20120_v3 Cicer arietinum L. HOM05D003422 ORTHO05D004263 4.5e-84 315.5 303 65.3
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 7.7e-84 314.7 342 54.1
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 1.3e-83 313.9 298 59.4
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 2.9e-83 312.8 316 59.8
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 3.8e-83 312.4 298 58.4
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 6.5e-83 311.6 304 59.9
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 1.1e-82 310.8 282 62.4
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 1.5e-82 310.5 304 61.5
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 1.9e-82 310.1 300 60.7
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 3.2e-82 309.3 302 63.2
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 5.5e-82 308.5 301 59.5
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 7.2e-82 308.1 307 56.0
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 9.4e-82 307.8 283 62.9
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 1.2e-81 307.4 204 77.0
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 1.4e-80 303.9 398 48.7
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 2.3e-80 303.1 300 56.3
Lj1g0018398 Lotus japonicus HOM05D003422 ORTHO05D004263 6.7e-80 301.6 299 63.9
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 1.5e-79 300.4 299 57.9
ECA233G3049 Erigeron canadensis HOM05D003422 ORTHO05D004263 2.6e-79 299.7 304 63.5
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 4.4e-79 298.9 325 52.9
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 5.7e-79 298.5 289 60.9
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 7.5e-79 298.1 297 57.2
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 4.8e-78 295.4 298 63.1
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 8.2e-78 294.7 202 76.2
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 1.8e-77 293.5 202 72.3
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 1.8e-77 293.5 202 72.3
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 1.8e-77 293.5 202 72.3
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 1.8e-77 293.5 202 72.3
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 5.3e-77 292.0 202 71.8
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 5.3e-77 292.0 202 71.8
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 1.2e-76 290.8 201 71.6
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.6e-76 290.4 265 60.0
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 3.8e-75 285.8 201 70.1
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 3.8e-75 285.8 201 70.1
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 3.8e-75 285.8 201 70.1
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 3.8e-75 285.8 202 69.8
Medtr4g079190 Medicago truncatula HOM05D003422 ORTHO05D004263 8.5e-75 284.6 308 57.1
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 1.1e-74 284.3 295 55.6
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 3.2e-74 282.7 299 55.9
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 3.2e-74 282.7 285 57.9
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 3.2e-74 282.7 259 59.5
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 5.5e-74 282.0 202 70.3
AUR62003555 Chenopodium quinoa HOM05D003422 ORTHO05D004263 1.6e-73 280.4 303 52.8
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 2.7e-73 279.6 298 54.7
CDE02G2608 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 3.6e-73 279.3 251 64.9
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 3.6e-73 279.3 239 61.5
AUR62017869 Chenopodium quinoa HOM05D003422 ORTHO05D004263 8.0e-73 278.1 303 52.8
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 8.0e-73 278.1 301 54.5
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 1.4e-72 277.3 301 54.5
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.4e-72 277.3 191 78.5
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 2.3e-72 276.6 299 54.5
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 3.0e-72 276.2 308 53.9
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 1.5e-71 273.9 298 55.0
SMO331G0073 Selaginella moellendorffii HOM05D003422 ORTHO05D004263 2.2e-70 270.0 265 56.6
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 2.8e-70 269.6 242 62.0
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 3.7e-70 269.2 296 52.0
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 8.3e-70 268.1 309 54.7
Zm00001eb364260 Zea mays HOM05D003422 ORTHO05D004263 2.4e-69 266.5 297 51.5
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 3.1e-69 266.2 299 54.5
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 3.1e-69 266.2 299 54.5
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 3.1e-69 266.2 302 55.3
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 2.7e-68 263.1 249 58.2
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 2.7e-68 263.1 308 49.0
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 3.5e-68 262.7 330 49.7
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 3.5e-68 262.7 219 75.8
CDE05G1364 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 4.5e-68 262.3 261 54.0
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 1.5e-66 257.3 280 56.8
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 2.1e-65 253.4 285 54.7
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 2.7e-65 253.1 277 53.4
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 1.0e-64 251.1 216 58.8
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 4.4e-63 245.7 295 49.5
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 5.7e-63 245.4 269 53.5
Nitab4.5_0000979g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 2.4e-61 240.0 154 78.6
CBR_g32274 Chara braunii HOM05D003422 ORTHO05D004263 3.1e-61 239.6 241 59.3
Prupe.8G011700 Prunus persica HOM05D003422 ORTHO05D004263 2.3e-59 233.4 239 61.5
SEGI_01875 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 1.6e-57 227.3 128 83.6
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 5.2e-56 222.2 270 51.9
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 5.2e-56 222.2 204 57.8
ATR0996G003 Amborella trichopoda HOM05D003422 ORTHO05D004263 2.9e-54 216.5 258 48.8
Cre02.g145231 Chlamydomonas reinhardtii HOM05D003422 ORTHO05D004263 7.8e-52 208.4 220 50.5
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 2.5e-50 203.4 216 67.1
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 3.3e-50 203.0 278 52.2
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 9.5e-50 201.4 193 54.9
PRCOL_00004566 Prasinoderma coloniale HOM05D003422 ORTHO05D004263 3.6e-49 199.5 216 49.5
Pp3c1_36430 Physcomitrium patens HOM05D003422 ORTHO05D004263 3.0e-43 179.9 305 38.0
Eucgr.K00976 Eucalyptus grandis HOM05D003422 ORTHO05D004263 3.3e-42 176.4 289 47.1
MCO01G280 Micromonas commoda HOM05D003422 ORTHO05D004263 9.5e-42 174.9 178 57.9
Haze_26253 Corylus avellana HOM05D003422 ORTHO05D004263 4.9e-38 162.5 242 46.3
Cfa026988 Carpinus fangiana HOM05D003422 ORTHO05D004263 8.3e-38 161.8 233 42.9
Lj1A759T42 Lonicera japonica HOM05D003422 ORTHO05D004263 2.7e-36 156.8 144 68.8
BolC1t04073H Brassica oleracea HOM05D003422 ORTHO05D004263 2.4e-29 133.7 71 81.7
C01p41190 Brassica napus HOM05D003422 ORTHO05D004263 4.1e-29 132.9 71 81.7
Eucgr.B00881 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.3e-27 127.9 71 88.7
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 5.1e-27 125.9 193 49.2
Os07g0271600 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 1.1e-24 118.2 77 72.7
AagrBONN_evm.TU.Sc2ySwM_344.1527 Anthoceros agrestis HOM05D003422 ORTHO05D004263 1.4e-24 117.9 189 46.6
BcaB04g17046 Brassica carinata HOM05D003422 ORTHO05D004263 3.1e-24 116.7 72 80.6
BolC4t24676H Brassica oleracea HOM05D003422 ORTHO05D004263 1.3e-22 111.3 114 57.0
BcaB01g03637 Brassica carinata HOM05D003422 ORTHO05D004263 4.2e-21 106.3 78 73.1
BcaB07g33435 Brassica carinata HOM05D003422 ORTHO05D004263 1.7e-19 100.9 78 70.5
FAN06G3710 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.5e-18 97.8 46 89.1
vmacro17128 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 2.0e-15 87.4 132 55.3
BcaB01g02833 Brassica carinata HOM05D003422 ORTHO05D004263 1.4e-13 81.3 77 62.3
Oeu036040.1 Olea europaea HOM05D003422 ORTHO05D004263 7.1e-13 79.0 130 40.8
BcaC02g10230 Brassica carinata HOM05D003422 ORTHO05D004263 1.3e-11 74.7 73 58.9
Nitab4.5_0000979g0020 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.3e-11 74.7 107 44.9
QL03p061482 Quercus lobata HOM05D003422 ORTHO05D034179 1.3e-09 68.2 170 37.1
SEGI_38458 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 1.3e-09 68.2 171 33.3
FAN10G4221 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.0e-07 60.8 124 39.5
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 3.4e-07 60.1 47 70.2
BcaC09g49085 Brassica carinata HOM05D001456 ORTHO05D015898 2.2e-06 57.4 72 48.6
TWI60G0838 Tripterygium wilfordii HOM05D003422 ORTHO05D413943 4.9e-06 56.2 36 72.2


User provided reference genes

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