Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G082950 Populus trichocarpa HOM05D003482 ORTHO05D004194 3.8e-35 151.0 77 100.0
Sabra18G0002200 Salix brachista HOM05D003482 ORTHO05D004194 3.5e-25 117.9 67 89.6
Sabra18G0005800 Salix brachista HOM05D003482 ORTHO05D004194 3.5e-25 117.9 67 89.6
Sabra18G0007800 Salix brachista HOM05D003482 ORTHO05D004194 3.5e-25 117.9 67 89.6
Sabra18G0009100 Salix brachista HOM05D003482 ORTHO05D004194 3.5e-25 117.9 67 89.6
Sabra18G0008800 Salix brachista HOM05D003482 ORTHO05D004194 1.8e-24 115.5 67 88.1
Potri.018G003400 Populus trichocarpa HOM05D003482 ORTHO05D004194 3.0e-24 114.8 67 88.1
Potri.018G004500 Populus trichocarpa HOM05D003482 ORTHO05D004194 5.1e-24 114.0 67 88.1
Sabra06G0214300 Salix brachista HOM05D003482 ORTHO05D004194 8.2e-22 106.7 69 82.6
Potri.006G276600 Populus trichocarpa HOM05D003482 ORTHO05D004194 1.5e-20 102.4 69 79.7
Manes.03G001800 Manihot esculenta HOM05D003482 ORTHO05D004194 7.9e-17 90.1 68 64.7
Dinv11875 Davidia involucrata HOM05D003482 ORTHO05D004194 1.0e-16 89.7 62 72.6
FvH4_2g36370 Fragaria vesca HOM05D003482 ORTHO05D004194 1.8e-16 89.0 74 64.9
FAN27G0167 Fragaria x ananassa HOM05D003482 ORTHO05D004194 1.8e-16 89.0 74 64.9
COL.COLO4_18624 Corchorus olitorius HOM05D003482 ORTHO05D004194 2.3e-16 88.6 65 67.7
Ciclev10007354m.g Citrus clementina HOM05D003482 ORTHO05D004194 5.1e-16 87.4 65 66.2
Manes.16G137200 Manihot esculenta HOM05D003482 ORTHO05D004194 5.1e-16 87.4 51 78.4
Prupe.1G455100 Prunus persica HOM05D003482 ORTHO05D004194 8.7e-16 86.7 69 60.9
Thecc.09G004000 Theobroma cacao HOM05D003482 ORTHO05D004194 1.5e-15 85.9 66 62.1
DCAR_004550 Daucus carota HOM05D003482 ORTHO05D004194 5.7e-15 84.0 59 66.1
TWI32G0788 Tripterygium wilfordii HOM05D003482 ORTHO05D004194 5.7e-15 84.0 67 62.7
Atru.chr7.2677 Acer truncatum HOM05D003482 ORTHO05D004194 7.4e-15 83.6 62 67.7
RcHm_v2.0_Chr6g0305511 Rosa chinensis HOM05D003482 ORTHO05D004194 9.7e-15 83.2 74 60.8
Duzib168G0916 Durio zibethinus HOM05D003482 ORTHO05D004194 1.3e-14 82.8 63 63.5
FAN15G0261 Fragaria x ananassa HOM05D003482 ORTHO05D004194 1.3e-14 82.8 74 62.2
MD15G1100800 Malus domestica HOM05D003482 ORTHO05D004194 2.2e-14 82.0 59 64.4
MD08G1123100 Malus domestica HOM05D003482 ORTHO05D004194 4.8e-14 80.9 63 61.9
Gohir.A05G066000 Gossypium hirsutum HOM05D003482 ORTHO05D004194 1.1e-13 79.7 51 72.5
Gohir.D05G068400 Gossypium hirsutum HOM05D003482 ORTHO05D004194 1.1e-13 79.7 51 72.5
Gorai.009G069300 Gossypium raimondii HOM05D003482 ORTHO05D004194 1.1e-13 79.7 51 72.5
Cfa013321 Carpinus fangiana HOM05D003482 ORTHO05D004194 1.4e-13 79.3 67 61.2
CiPaw.07G208900 Carya illinoinensis HOM05D003482 ORTHO05D004194 1.8e-13 79.0 74 55.4
MD15G1102100 Malus domestica HOM05D003482 ORTHO05D004194 1.8e-13 79.0 59 62.7
BcaC03g17943 Brassica carinata HOM05D003482 ORTHO05D004194 2.4e-13 78.6 66 62.1
A02p40080 Brassica napus HOM05D003482 ORTHO05D004194 2.4e-13 78.6 66 62.1
C02p60040 Brassica napus HOM05D003482 ORTHO05D004194 2.4e-13 78.6 66 62.1
BolC2t12059H Brassica oleracea HOM05D003482 ORTHO05D004194 2.4e-13 78.6 66 62.1
BraA02t08971Z Brassica rapa HOM05D003482 ORTHO05D004194 2.4e-13 78.6 66 62.1
Eucgr.C03989 Eucalyptus grandis HOM05D003482 ORTHO05D004194 2.4e-13 78.6 72 58.3
Psat6g006000 Pisum sativum HOM05D003482 ORTHO05D004194 2.4e-13 78.6 50 70.0
Sed0005804 Sechium edule HOM05D003482 ORTHO05D004194 2.4e-13 78.6 54 72.2
BcaB07g29924 Brassica carinata HOM05D003482 ORTHO05D004194 3.1e-13 78.2 65 63.1
FAN20G1504 Fragaria x ananassa HOM05D003482 ORTHO05D004194 3.1e-13 78.2 74 59.5
Oeu059293.1 Olea europaea HOM05D003482 ORTHO05D004194 3.1e-13 78.2 50 72.0
Haze_21807 Corylus avellana HOM05D003482 ORTHO05D004194 4.1e-13 77.8 67 62.7
Nitab4.5_0000970g0010 Nicotiana tabacum HOM05D003482 ORTHO05D004194 5.3e-13 77.4 73 60.3
QL12p026010 Quercus lobata HOM05D003482 ORTHO05D004194 5.3e-13 77.4 66 63.6
Rhsim07G0170800 Rhododendron simsii HOM05D003482 ORTHO05D004194 5.3e-13 77.4 64 62.5
vmacro05099 Vaccinium macrocarpon HOM05D003482 ORTHO05D004194 6.9e-13 77.0 69 59.4
SalBow4G3081 Salvia bowleyana HOM05D003482 ORTHO05D004194 9.1e-13 76.6 58 63.8
arahy.Tifrunner.gnm1.ann1.N6E37M Arachis hypogaea HOM05D003482 ORTHO05D004194 1.2e-12 76.3 49 73.5
Ca_12826_v3 Cicer arietinum L. HOM05D003482 ORTHO05D004194 1.5e-12 75.9 50 70.0
BcaNung01256 Brassica carinata HOM05D003482 ORTHO05D004194 2.0e-12 75.5 63 63.5
BraA06t26483Z Brassica rapa HOM05D003482 ORTHO05D004194 2.0e-12 75.5 65 66.2
A06p35580 Brassica napus HOM05D003482 ORTHO05D004194 2.6e-12 75.1 63 63.5
MELO3C003597.2 Cucumis melo HOM05D003482 ORTHO05D004194 2.6e-12 75.1 54 68.5
CsaV3_3G047320 Cucumis sativus L. HOM05D003482 ORTHO05D004194 2.6e-12 75.1 54 68.5
Thhalv10003586m.g Eutrema salsugineum HOM05D003482 ORTHO05D004194 2.6e-12 75.1 56 67.9
TPR.G12040 Trifolium pratense HOM05D003482 ORTHO05D004194 2.6e-12 75.1 50 68.0
C07p42960 Brassica napus HOM05D003482 ORTHO05D004194 3.4e-12 74.7 65 64.6
BolC7t44825H Brassica oleracea HOM05D003482 ORTHO05D004194 3.4e-12 74.7 65 64.6
CARHR188650 Cardamine hirsuta HOM05D003482 ORTHO05D004194 3.4e-12 74.7 63 60.3
arahy.Tifrunner.gnm1.ann1.21Z9DD Arachis hypogaea HOM05D003482 ORTHO05D004194 4.5e-12 74.3 63 60.3
TAR626G0827 Trochodendron aralioides HOM05D003482 ORTHO05D004194 4.5e-12 74.3 74 54.1
TAR506G0002 Trochodendron aralioides HOM05D003482 ORTHO05D004194 5.9e-12 73.9 62 62.9
AT5G24810 Arabidopsis thaliana HOM05D003482 ORTHO05D004194 1.0e-11 73.2 63 60.3
Sopen08g022930 Solanum pennellii HOM05D003482 ORTHO05D004194 1.0e-11 73.2 73 56.2
Cpa.g.sc328.6 Carica papaya HOM05D003482 ORTHO05D004194 1.3e-11 72.8 65 63.1
Actinidia14155 Actinidia chinensis HOM05D003482 ORTHO05D004194 1.7e-11 72.4 50 66.0
Carub.0006s2266 Capsella rubella HOM05D003482 ORTHO05D004194 1.7e-11 72.4 63 58.7
HanXRQChr03g0082881 Helianthus annuus HOM05D003482 ORTHO05D004194 1.7e-11 72.4 74 50.0
Sp2g22640 Schrenkiella parvula HOM05D003482 ORTHO05D004194 1.7e-11 72.4 64 57.8
PGSC0003DMG400029592 Solanum tuberosum HOM05D003482 ORTHO05D004194 1.7e-11 72.4 73 56.2
AL6G36450 Arabidopsis lyrata HOM05D003482 ORTHO05D004194 2.2e-11 72.0 63 58.7
MSTRG.11822 Avicennia marina HOM05D003482 ORTHO05D004194 2.2e-11 72.0 65 60.0
SGA_v2.0_scaffold27G11648 Striga asiatica HOM05D003482 ORTHO05D004194 2.9e-11 71.6 41 75.6
Lj1g0006594 Lotus japonicus HOM05D003482 ORTHO05D004194 3.8e-11 71.2 75 49.3
Lalb_Chr22g0361011 Lupinus albus HOM05D003482 ORTHO05D004194 3.8e-11 71.2 42 73.8
Lsat_1_v5_gn_5_60380 Lactuca sativa HOM05D003482 ORTHO05D004194 5.0e-11 70.9 53 66.0
PSO423G0073 Papaver somniferum HOM05D003482 ORTHO05D004194 5.0e-11 70.9 48 66.7
PSO596G0002 Papaver somniferum HOM05D003482 ORTHO05D004194 5.0e-11 70.9 48 66.7
Cc00_g11230 Coffea canephora HOM05D003482 ORTHO05D004194 8.5e-11 70.1 65 61.5
Glyma.14G139800 Glycine max HOM05D003482 ORTHO05D004194 8.5e-11 70.1 78 51.3
Phvul.001G077100 Phaseolus vulgaris HOM05D003482 ORTHO05D004194 8.5e-11 70.1 67 56.7
Glyma.17G188300 Glycine max HOM05D003482 ORTHO05D004194 1.1e-10 69.7 62 56.5
Lsat_1_v5_gn_5_60400 Lactuca sativa HOM05D003482 ORTHO05D004194 1.1e-10 69.7 50 70.0
Lj7C753G1 Lonicera japonica HOM05D003482 ORTHO05D004194 1.1e-10 69.7 66 56.1
Lalb_Chr14g0362391 Lupinus albus HOM05D003482 ORTHO05D004194 1.4e-10 69.3 62 59.7
Medtr1g008980 Medicago truncatula HOM05D003482 ORTHO05D004194 1.4e-10 69.3 50 64.0
PGR044G0156 Punica granatum HOM05D003482 ORTHO05D004194 1.9e-10 68.9 59 57.6
Peaxi162Scf00213g01025 Petunia axillaris HOM05D003482 ORTHO05D004194 3.2e-10 68.2 82 52.4
HanXRQChr03g0081371 Helianthus annuus HOM05D003482 ORTHO05D004194 4.2e-10 67.8 54 64.8
TWI34G0517 Tripterygium wilfordii HOM05D003482 ORTHO05D004194 4.2e-10 67.8 47 63.8
VMungo0647G1298 Vigna mungo HOM05D003482 ORTHO05D004194 7.2e-10 67.0 67 55.2
COL.COLO4_18622 Corchorus olitorius HOM05D003482 ORTHO05D004194 1.2e-09 66.2 65 56.9
ECA233G2479 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.2e-09 66.2 61 57.4
Migut.A00459 Erythranthe guttata HOM05D003482 ORTHO05D004194 1.2e-09 66.2 59 66.1
Aa31LG11G4020 Aethionema arabicum HOM05D003482 ORTHO05D004194 1.6e-09 65.9 63 55.6
Nn8g40986 Nelumbo nucifera HOM05D003482 ORTHO05D004194 2.1e-09 65.5 56 62.5
Zm00001eb272880 Zea mays HOM05D003482 ORTHO05D004194 2.1e-09 65.5 88 46.6
CDE05G0655 Ceratophyllum demersum HOM05D003482 ORTHO05D004194 2.7e-09 65.1 62 58.1
THA.LOC104814963 Tarenaya hassleriana HOM05D003482 ORTHO05D004194 2.7e-09 65.1 64 57.8
HanXRQChr13g0411821 Helianthus annuus HOM05D003482 ORTHO05D004194 3.6e-09 64.7 59 57.6
Lsat_1_v5_gn_5_58921 Lactuca sativa HOM05D003482 ORTHO05D004194 6.1e-09 63.9 43 74.4
CAN.G195.3 Capsicum annuum HOM05D003482 ORTHO05D004194 7.9e-09 63.5 82 47.6
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 7.9e-09 63.5 60 53.3
Aqoxy7G02727 Aquilegia oxysepala HOM05D003482 ORTHO05D004194 1.4e-08 62.8 68 55.9
MBI13_g31548_MAGBIO Magnolia biondii HOM05D003482 ORTHO05D004194 1.8e-08 62.4 54 64.8
HPP92_015798 Vanilla planifolia HOM05D003482 ORTHO05D004194 1.8e-08 62.4 71 49.3
ATR0626G323 Amborella trichopoda HOM05D003482 ORTHO05D004194 2.3e-08 62.0 55 58.2
ECA240G1915 Erigeron canadensis HOM05D003482 ORTHO05D004194 3.0e-08 61.6 63 55.6
ECA240G2590 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.1e-07 59.7 46 65.2
ECA240G3793 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.1e-07 59.7 46 65.2
Lsat_1_v5_gn_5_60320 Lactuca sativa HOM05D003482 ORTHO05D004194 2.0e-07 58.9 42 69.0
CANSAT25G1343 Cannabis sativa HOM05D003482 ORTHO05D004194 2.6e-07 58.5 78 44.9
Lsat_1_v5_gn_5_59000 Lactuca sativa HOM05D003482 ORTHO05D004194 2.6e-07 58.5 53 56.6
ECA240G2186 Erigeron canadensis HOM05D003482 ORTHO05D004194 3.3e-07 58.2 46 63.0
Sc14g0002010 Simmondsia chinensis HOM05D003482 ORTHO05D004194 4.4e-07 57.8 54 55.6
HPP92_015810 Vanilla planifolia HOM05D003482 ORTHO05D004194 4.4e-07 57.8 71 47.9
ECA240G0756 Erigeron canadensis HOM05D003482 ORTHO05D004194 5.7e-07 57.4 52 59.6
ECA240G4147 Erigeron canadensis HOM05D003482 ORTHO05D004194 7.4e-07 57.0 45 66.7
HanXRQChr03g0082871 Helianthus annuus HOM05D003482 ORTHO05D004194 7.4e-07 57.0 37 67.6
FvH4_2g36372 Fragaria vesca HOM05D003482 ORTHO05D004194 1.7e-06 55.8 59 54.2
Lsat_1_v5_gn_5_58881 Lactuca sativa HOM05D003482 ORTHO05D004194 3.7e-06 54.7 47 63.8
Lsat_1_v5_gn_5_60580 Lactuca sativa HOM05D003482 ORTHO05D004194 3.7e-06 54.7 78 44.9


User provided reference genes

Program Settings