Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 0.0e+00 2108.2 1061 100.0
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 0.0e+00 1862.0 1062 89.4
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 0.0e+00 1628.2 1083 77.8
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 0.0e+00 1557.0 1080 77.3
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 0.0e+00 1208.0 1110 60.0
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 7.7e-304 1047.3 1142 54.4
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 3.8e-303 1045.0 1090 53.3
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 5.5e-302 1041.2 1155 52.6
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 7.7e-296 1020.8 1094 54.4
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 5.0e-295 1018.1 1174 51.6
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 1.0e-292 1010.4 1203 50.8
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 2.3e-292 1009.2 1070 53.9
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 8.2e-290 1000.7 1045 53.6
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 1.8e-289 999.6 1160 51.7
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 2.7e-288 995.7 1158 51.0
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 1.5e-286 989.9 1113 52.5
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 8.8e-284 980.7 1164 52.3
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.8e-282 975.7 1124 52.2
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 3.7e-282 975.3 1122 51.9
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.2e-280 970.3 1125 51.8
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 1.1e-278 963.8 1140 52.1
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 7.2e-278 961.1 1153 49.5
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 2.1e-277 959.5 1179 48.4
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 4.4e-275 951.8 1152 50.3
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 6.1e-269 931.4 1078 51.6
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 1.8e-268 929.9 1173 48.4
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 4.0e-268 928.7 1220 47.9
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 6.8e-268 927.9 1092 50.2
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 3.7e-266 922.2 1074 50.2
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 5.4e-265 918.3 1071 50.0
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.6e-264 916.8 1170 48.2
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.7e-264 916.0 978 53.7
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 7.8e-264 914.4 1169 48.8
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 5.6e-262 908.3 1214 46.2
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 7.0e-257 891.3 1119 49.3
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 4.6e-256 888.6 1095 48.4
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 3.0e-255 885.9 913 54.1
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 4.6e-248 862.1 1066 47.7
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 2.3e-244 849.7 1080 48.1
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 2.3e-244 849.7 1167 46.2
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 4.6e-240 835.5 1081 47.2
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 6.0e-240 835.1 1076 48.3
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 7.8e-240 834.7 1142 46.2
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 6.6e-239 831.6 1112 47.0
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 1.9e-238 830.1 1063 47.9
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 3.3e-238 829.3 1160 46.0
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 5.6e-238 828.6 1188 45.3
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 1.2e-237 827.4 1143 46.1
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 1.6e-237 827.0 1256 42.7
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 2.4e-236 823.2 1066 46.8
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 1.2e-235 820.8 1127 45.1
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 2.2e-234 816.6 1069 46.1
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 2.9e-234 816.2 1089 47.0
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 8.4e-234 814.7 1166 45.4
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 8.4e-234 814.7 1094 46.9
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 2.4e-233 813.1 1143 44.9
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 5.4e-233 812.0 1095 47.0
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 1.2e-232 810.8 558 71.1
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 7.8e-232 808.1 1049 46.6
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 3.0e-231 806.2 1073 45.9
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 3.3e-230 802.7 1091 46.7
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 5.6e-230 802.0 1085 45.3
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 4.0e-228 795.8 1177 43.4
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 9.9e-227 791.2 1062 46.4
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 1.3e-226 790.8 1110 44.4
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 1.1e-225 787.7 1063 44.4
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 1.9e-225 786.9 1200 42.1
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 1.9e-225 786.9 1066 45.2
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 4.2e-225 785.8 1161 43.0
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 1.6e-224 783.9 1065 45.0
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 2.7e-224 783.1 1172 44.5
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 6.7e-223 778.5 999 47.3
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 2.5e-222 776.5 1064 44.8
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 4.3e-222 775.8 1092 44.5
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 1.8e-220 770.4 557 68.0
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 3.4e-219 766.1 1059 44.5
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 3.4e-219 766.1 1110 44.1
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 2.4e-217 760.0 1126 42.2
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 9.3e-217 758.1 914 47.5
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 3.5e-216 756.1 1173 42.8
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 4.6e-216 755.7 1131 43.8
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 1.8e-215 753.8 1066 44.5
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 2.3e-215 753.4 1019 44.9
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 3.0e-215 753.1 1119 43.5
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 4.3e-214 749.2 1094 43.6
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 9.6e-214 748.0 920 47.0
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 3.7e-213 746.1 1064 43.9
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 8.2e-213 745.0 918 45.4
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 1.5e-211 740.7 1021 45.1
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 2.2e-210 736.9 1007 46.5
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 3.0e-207 726.5 757 54.4
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.5e-206 724.2 923 46.6
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 6.5e-202 708.8 1147 43.0
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 7.2e-201 705.3 1104 41.1
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 2.7e-192 676.8 1213 39.3
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 1.3e-189 667.9 913 43.4
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.4e-185 654.4 1185 39.7
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 4.0e-175 619.8 569 54.3
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 1.3e-173 614.8 1048 39.6
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 1.3e-165 588.2 1031 40.3
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 2.1e-152 544.3 1165 34.7
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.7e-149 534.6 492 57.9
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 1.1e-145 521.9 849 41.0
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 1.2e-144 518.5 925 39.8
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 1.1e-137 495.4 781 39.3
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 1.6e-136 491.5 314 74.8
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 2.6e-134 484.2 917 38.1
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 7.1e-132 476.1 413 57.6
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 4.6e-123 446.8 599 43.6
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 8.7e-122 442.6 591 44.0
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 1.3e-117 428.7 513 43.9
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 6.4e-117 426.4 801 37.2
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 8.4e-109 399.4 525 43.4
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 1.8e-106 391.7 730 41.0
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 1.1e-87 329.3 711 35.6
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 1.3e-77 295.8 227 69.6
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 7.0e-71 273.5 704 33.2
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 2.9e-69 268.1 223 61.0
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 7.5e-33 147.1 297 34.3
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 3.5e-30 138.3 608 28.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 8.9e-18 97.1 80 62.5
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 2.0e-17 95.9 167 42.5
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 2.6e-17 95.5 625 25.0
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 5.8e-17 94.4 103 46.6
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 5.8e-17 94.4 57 70.2
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 5.8e-17 94.4 87 54.0
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 9.9e-17 93.6 199 31.2
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 1.7e-16 92.8 69 62.3
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 1.7e-16 92.8 51 78.4
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 3.2e-15 88.6 55 69.1
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 7.8e-14 84.0 117 50.4
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 6.2e-11 74.3 149 38.3
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 9.9e-09 67.0 133 42.9


User provided reference genes

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