Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.4e-50 202.6 101 100.0
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 1.5e-44 182.6 101 93.1
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.8e-37 159.1 103 81.6
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 7.6e-36 153.7 98 79.6
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 5.0e-35 151.0 93 79.6
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 4.2e-34 147.9 101 77.2
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 5.5e-34 147.5 98 74.5
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 7.2e-34 147.1 98 77.6
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 9.3e-34 146.7 91 79.1
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 1.2e-33 146.4 105 70.5
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 3.5e-33 144.8 94 73.4
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 7.9e-33 143.7 98 75.5
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 7.9e-33 143.7 98 75.5
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 1.0e-32 143.3 93 75.3
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.3e-32 142.9 98 74.5
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 2.3e-32 142.1 94 73.4
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 3.0e-32 141.7 103 72.8
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 3.9e-32 141.4 93 76.3
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 6.7e-32 140.6 97 75.3
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 8.7e-32 140.2 97 70.1
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 1.1e-31 139.8 91 76.9
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.3e-30 136.3 100 73.0
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 1.6e-30 136.0 101 71.3
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 1.1e-29 133.3 98 68.4
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 1.8e-29 132.5 91 72.5
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.8e-29 132.5 94 70.2
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 2.4e-29 132.1 100 67.0
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.4e-29 132.1 93 69.9
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 3.1e-29 131.7 101 68.3
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 3.1e-29 131.7 100 68.0
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 4.1e-29 131.3 94 70.2
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 6.9e-29 130.6 96 68.8
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 6.9e-29 130.6 98 66.3
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 1.2e-28 129.8 102 66.7
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 1.5e-28 129.4 102 68.6
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.0e-28 129.0 101 67.3
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 2.6e-28 128.6 101 67.3
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.6e-28 128.6 95 65.3
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 3.4e-28 128.3 93 71.0
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 5.9e-28 127.5 101 64.4
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 1.0e-27 126.7 101 66.3
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 1.3e-27 126.3 100 64.0
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.3e-27 126.3 90 67.8
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 1.7e-27 125.9 102 68.6
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 1.7e-27 125.9 102 68.6
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.7e-27 125.9 90 70.0
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 1.7e-27 125.9 101 65.3
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 2.2e-27 125.6 95 71.6
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 2.2e-27 125.6 94 67.0
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 2.2e-27 125.6 89 74.2
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 2.2e-27 125.6 90 71.1
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 2.2e-27 125.6 97 66.0
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 2.9e-27 125.2 97 64.9
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 3.8e-27 124.8 84 70.2
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 3.8e-27 124.8 91 69.2
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 8.5e-27 123.6 102 65.7
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 1.1e-26 123.2 92 70.7
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.1e-26 123.2 89 67.4
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 1.1e-26 123.2 96 68.8
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 1.1e-26 123.2 94 68.1
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 1.4e-26 122.9 92 66.3
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 1.4e-26 122.9 92 70.7
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 1.4e-26 122.9 94 69.1
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 1.4e-26 122.9 92 68.5
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 2.5e-26 122.1 75 81.3
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 4.2e-26 121.3 92 68.5
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 5.5e-26 120.9 90 67.8
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 7.2e-26 120.6 97 64.9
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 7.2e-26 120.6 91 67.0
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 7.2e-26 120.6 92 67.4
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 7.2e-26 120.6 97 63.9
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 7.2e-26 120.6 94 63.8
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 9.4e-26 120.2 97 66.0
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 9.4e-26 120.2 89 65.2
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.2e-25 119.8 77 72.7
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 2.1e-25 119.0 90 66.7
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 2.7e-25 118.6 97 63.9
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 2.7e-25 118.6 97 63.9
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 2.7e-25 118.6 97 63.9
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 4.6e-25 117.9 86 69.8
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 4.6e-25 117.9 97 61.9
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 6.1e-25 117.5 89 66.3
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 6.1e-25 117.5 86 72.1
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 6.1e-25 117.5 97 62.9
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 6.1e-25 117.5 82 67.1
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 7.9e-25 117.1 95 64.2
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 1.4e-24 116.3 88 64.8
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 1.8e-24 115.9 96 60.4
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 2.3e-24 115.5 97 60.8
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 3.0e-24 115.2 91 63.7
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 3.9e-24 114.8 96 64.6
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 1.1e-23 113.2 92 65.2
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 1.1e-23 113.2 91 62.6
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 1.1e-23 113.2 90 66.7
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 1.5e-23 112.8 94 62.8
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.5e-23 112.8 97 61.9
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 3.3e-23 111.7 94 62.8
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 3.3e-23 111.7 94 62.8
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 4.3e-23 111.3 89 61.8
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 5.7e-23 110.9 92 63.0
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 9.7e-23 110.2 94 61.7
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 9.7e-23 110.2 94 61.7
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 9.7e-23 110.2 94 61.7
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 1.3e-22 109.8 59 91.5
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 1.1e-21 106.7 92 60.9
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 1.1e-21 106.7 92 60.9
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 1.1e-21 106.7 92 60.9
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 3.1e-21 105.1 99 54.5
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 3.1e-21 105.1 103 54.4
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 2.0e-20 102.4 90 56.7
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 4.5e-20 101.3 74 70.3
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 4.5e-20 101.3 74 70.3
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 7.7e-20 100.5 70 72.9
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 1.7e-19 99.4 79 60.8
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 2.9e-19 98.6 75 64.0
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 2.9e-19 98.6 96 56.2
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 6.5e-19 97.4 96 50.0
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 1.9e-18 95.9 87 54.0
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 1.6e-17 92.8 83 61.4
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 4.7e-17 91.3 101 51.5
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 1.4e-16 89.7 101 50.5
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 3.9e-16 88.2 57 71.9
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 3.9e-16 88.2 74 63.5
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 2.6e-15 85.5 73 63.0
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 3.3e-15 85.1 85 47.1
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 4.4e-15 84.7 95 47.4
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 4.4e-15 84.7 76 59.2
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 5.7e-15 84.3 87 52.9
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 2.8e-14 82.0 91 49.5
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 4.8e-14 81.3 91 47.3
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 1.4e-13 79.7 87 51.7
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 1.6e-12 76.3 68 60.3
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 5.9e-12 74.3 51 62.7
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 2.2e-11 72.4 87 44.8
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 2.9e-11 72.0 66 57.6
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 8.5e-11 70.5 57 56.1
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 1.1e-10 70.1 55 61.8
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.5e-10 69.7 54 61.1
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 2.5e-10 68.9 62 56.5
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 2.5e-10 68.9 56 58.9
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 3.2e-10 68.6 54 61.1
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 4.2e-10 68.2 54 61.1
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 9.4e-10 67.0 61 55.7
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 3.6e-09 65.1 34 88.2
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 4.0e-08 61.6 72 47.2
MBI03_g02704_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 5.2e-08 61.2 37 73.0
MBI15_g16478_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 8.8e-08 60.5 36 77.8
MBI05_g13276_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.1e-07 60.1 34 79.4
Pp3c7_6970 Physcomitrium patens HOM05D005070 ORTHO05D005987 2.0e-07 59.3 71 43.7
AagrBONN_evm.TU.Sc2ySwM_362.1955 Anthoceros agrestis HOM05D005070 ORTHO05D005987 4.4e-07 58.2 66 45.5
MBI08_g15145_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D004199 5.7e-07 57.8 34 79.4
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 6.3e-06 54.3 46 56.5


User provided reference genes

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