Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G068600 Populus trichocarpa HOM05D004236 ORTHO05D004903 9.3e-84 313.5 162 100.0
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.5e-25 120.2 68 88.2
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 7.0e-23 111.3 61 86.9
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 5.9e-22 108.2 61 82.0
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 7.7e-22 107.8 68 76.5
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.0e-21 107.5 61 82.0
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 2.2e-21 106.3 61 82.0
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.9e-21 105.9 58 87.9
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 2.9e-21 105.9 68 75.0
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 3.8e-21 105.5 68 73.5
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 5.0e-21 105.1 61 78.7
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 5.0e-21 105.1 61 82.0
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 8.5e-21 104.4 68 72.1
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 8.5e-21 104.4 59 83.1
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 1.1e-20 104.0 61 80.3
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 1.9e-20 103.2 59 83.1
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 1.9e-20 103.2 59 83.1
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 2.5e-20 102.8 61 80.3
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 2.5e-20 102.8 61 78.7
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 3.2e-20 102.4 61 78.7
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 3.2e-20 102.4 61 80.3
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.2e-20 102.4 61 77.0
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 3.2e-20 102.4 61 77.0
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 3.2e-20 102.4 61 78.7
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 5.5e-20 101.7 61 72.1
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 5.5e-20 101.7 62 77.4
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 5.5e-20 101.7 66 71.2
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 5.5e-20 101.7 59 81.4
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 9.4e-20 100.9 68 70.6
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 9.4e-20 100.9 61 77.0
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 9.4e-20 100.9 59 81.4
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 1.2e-19 100.5 61 70.5
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 1.2e-19 100.5 61 70.5
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 1.2e-19 100.5 61 70.5
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 1.6e-19 100.1 61 70.5
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 1.6e-19 100.1 61 75.4
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.6e-19 100.1 61 75.4
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 2.1e-19 99.8 61 78.7
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 2.1e-19 99.8 61 73.8
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 2.7e-19 99.4 61 68.9
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 2.7e-19 99.4 61 68.9
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 2.7e-19 99.4 61 70.5
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 2.7e-19 99.4 61 68.9
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 2.7e-19 99.4 61 78.7
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 2.7e-19 99.4 61 78.7
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 2.7e-19 99.4 61 77.0
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 2.7e-19 99.4 61 77.0
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 2.7e-19 99.4 67 68.7
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 2.7e-19 99.4 67 68.7
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 2.7e-19 99.4 56 85.7
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 3.6e-19 99.0 61 73.8
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 3.6e-19 99.0 61 73.8
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 3.6e-19 99.0 59 79.7
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 3.6e-19 99.0 58 79.3
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 4.7e-19 98.6 58 72.4
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 4.7e-19 98.6 61 75.4
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 4.7e-19 98.6 61 75.4
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 4.7e-19 98.6 59 79.7
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 4.7e-19 98.6 102 55.9
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 4.7e-19 98.6 72 70.8
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 6.1e-19 98.2 59 78.0
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 6.1e-19 98.2 59 79.7
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 8.0e-19 97.8 61 67.2
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 8.0e-19 97.8 61 72.1
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 8.0e-19 97.8 59 78.0
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 8.0e-19 97.8 59 78.0
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 8.0e-19 97.8 61 73.8
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 1.0e-18 97.4 59 78.0
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 1.0e-18 97.4 59 78.0
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.0e-18 97.4 59 78.0
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 1.4e-18 97.1 56 78.6
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.4e-18 97.1 61 75.4
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 1.4e-18 97.1 56 78.6
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 1.4e-18 97.1 56 78.6
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 1.8e-18 96.7 61 70.5
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.8e-18 96.7 61 73.8
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.8e-18 96.7 61 73.8
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 1.8e-18 96.7 61 73.8
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 1.8e-18 96.7 61 75.4
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 2.3e-18 96.3 59 78.0
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 2.3e-18 96.3 68 70.6
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 2.3e-18 96.3 61 75.4
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 2.3e-18 96.3 62 72.6
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 3.0e-18 95.9 56 82.1
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 3.0e-18 95.9 59 78.0
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 4.0e-18 95.5 56 80.4
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 4.0e-18 95.5 61 70.5
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 4.0e-18 95.5 61 72.1
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 5.2e-18 95.1 61 73.8
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 6.8e-18 94.7 69 68.1
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 6.8e-18 94.7 56 78.6
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 6.8e-18 94.7 59 76.3
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 6.8e-18 94.7 59 76.3
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 8.8e-18 94.4 55 74.5
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 8.8e-18 94.4 59 76.3
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 8.8e-18 94.4 60 73.3
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 1.2e-17 94.0 62 66.1
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 1.2e-17 94.0 66 71.2
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 1.2e-17 94.0 59 74.6
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 1.5e-17 93.6 60 73.3
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 1.5e-17 93.6 56 76.8
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.5e-17 93.6 59 74.6
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 2.0e-17 93.2 53 83.0
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 2.0e-17 93.2 53 83.0
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 2.0e-17 93.2 58 74.1
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 2.6e-17 92.8 61 73.8
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 4.4e-17 92.0 56 76.8
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 4.4e-17 92.0 54 77.8
SEGI_28739 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 5.7e-17 91.7 111 47.7
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 7.5e-17 91.3 61 67.2
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 7.5e-17 91.3 61 67.2
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 7.5e-17 91.3 61 70.5
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 7.5e-17 91.3 79 57.0
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 9.8e-17 90.9 67 64.2
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 9.8e-17 90.9 56 73.2
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.7e-16 90.1 61 72.1
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 1.7e-16 90.1 59 71.2
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 2.2e-16 89.7 55 76.4
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 3.7e-16 89.0 53 79.2
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 8.3e-16 87.8 53 75.5
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 8.3e-16 87.8 61 68.9
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 1.1e-15 87.4 56 71.4
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 2.4e-15 86.3 66 60.6
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 5.4e-15 85.1 70 62.9
Zm00001eb334840 Zea mays HOM05D004236 ORTHO05D004903 9.1e-15 84.3 65 66.2
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 1.6e-14 83.6 56 66.1
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 2.7e-14 82.8 56 62.5
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 1.7e-13 80.1 59 71.2
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 1.9e-12 76.6 52 61.5
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 2.5e-12 76.3 97 46.4
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 4.2e-12 75.5 56 57.1
SEGI_26756 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 4.2e-12 75.5 92 52.2
Sed0025807 Sechium edule HOM05D004236 ORTHO05D004903 9.2e-07 57.8 33 78.8
arahy.Tifrunner.gnm1.ann1.YBT00D Arachis hypogaea HOM05D004236 ORTHO05D019770 3.5e-06 55.8 69 46.4
SHI07808 Sapria himalayana HOM05D004236 ORTHO05D004903 5.9e-06 55.1 36 75.0
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 7.7e-06 54.7 32 78.1


User provided reference genes

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