Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G068550 Populus trichocarpa HOM05D004236 ORTHO05D004903 5.7e-46 187.2 92 100.0
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 8.2e-29 130.2 80 87.5
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 1.4e-20 102.8 83 68.7
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 9.1e-20 100.1 84 69.0
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 1.2e-19 99.8 83 66.3
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 1.2e-19 99.8 80 71.2
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 1.6e-19 99.4 83 67.5
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 3.5e-19 98.2 80 67.5
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 4.5e-19 97.8 80 70.0
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.3e-18 96.3 83 66.3
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 1.7e-18 95.9 82 72.0
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 2.2e-18 95.5 81 69.1
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 2.2e-18 95.5 80 67.5
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 2.2e-18 95.5 83 65.1
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 2.2e-18 95.5 83 65.1
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.8e-18 94.7 83 65.1
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 3.8e-18 94.7 83 65.1
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 3.8e-18 94.7 80 70.0
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 3.8e-18 94.7 80 68.8
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 5.0e-18 94.4 81 69.1
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 5.0e-18 94.4 80 68.8
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 6.5e-18 94.0 80 66.2
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 8.5e-18 93.6 83 63.9
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 1.1e-17 93.2 80 68.8
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 1.1e-17 93.2 80 68.8
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 1.9e-17 92.4 80 66.2
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 2.5e-17 92.0 80 65.0
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 2.5e-17 92.0 80 67.5
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 3.2e-17 91.7 80 66.2
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 5.5e-17 90.9 80 67.5
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 5.5e-17 90.9 80 67.5
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 7.2e-17 90.5 80 68.8
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 7.2e-17 90.5 80 67.5
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 7.2e-17 90.5 80 67.5
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 9.5e-17 90.1 80 66.2
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 9.5e-17 90.1 80 66.2
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 1.2e-16 89.7 80 66.2
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 1.2e-16 89.7 80 67.5
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 1.2e-16 89.7 80 65.0
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 1.2e-16 89.7 80 67.5
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 1.2e-16 89.7 80 66.2
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.6e-16 89.4 80 63.8
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.6e-16 89.4 80 63.8
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 1.6e-16 89.4 80 66.2
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 2.1e-16 89.0 80 61.2
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 2.1e-16 89.0 81 66.7
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 2.1e-16 89.0 80 66.2
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 2.1e-16 89.0 80 66.2
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 2.1e-16 89.0 81 64.2
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 2.8e-16 88.6 81 63.0
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 2.8e-16 88.6 80 68.8
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 2.8e-16 88.6 80 65.0
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 3.6e-16 88.2 80 65.0
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 3.6e-16 88.2 80 65.0
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 4.7e-16 87.8 81 65.4
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 4.7e-16 87.8 81 65.4
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 4.7e-16 87.8 80 66.2
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 6.1e-16 87.4 81 65.4
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 6.1e-16 87.4 80 66.2
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 6.1e-16 87.4 80 65.0
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 6.1e-16 87.4 80 61.2
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 6.1e-16 87.4 81 64.2
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 6.1e-16 87.4 80 67.5
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 8.0e-16 87.0 80 65.0
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 8.0e-16 87.0 80 66.2
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 8.0e-16 87.0 80 65.0
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 8.0e-16 87.0 80 65.0
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 1.0e-15 86.7 81 61.7
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 1.0e-15 86.7 81 61.7
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 1.0e-15 86.7 80 67.5
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 1.0e-15 86.7 80 62.5
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.0e-15 86.7 80 62.5
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 1.4e-15 86.3 80 62.5
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 1.4e-15 86.3 80 62.5
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 1.4e-15 86.3 80 63.8
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 1.4e-15 86.3 80 65.0
Sed0017902 Sechium edule HOM05D004236 ORTHO05D004903 1.4e-15 86.3 80 63.8
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 1.8e-15 85.9 82 63.4
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 1.8e-15 85.9 82 63.4
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 1.8e-15 85.9 80 63.8
Oeu048228.1 Olea europaea HOM05D004236 ORTHO05D004903 2.3e-15 85.5 80 62.5
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 3.0e-15 85.1 79 64.6
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 4.0e-15 84.7 82 62.2
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 5.2e-15 84.3 81 60.5
BcaB01g01715 Brassica carinata HOM05D004236 ORTHO05D004903 5.2e-15 84.3 82 62.2
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 5.2e-15 84.3 85 61.2
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 5.2e-15 84.3 78 64.1
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 5.2e-15 84.3 80 62.5
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 5.2e-15 84.3 78 67.9
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 6.8e-15 84.0 80 62.5
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 8.8e-15 83.6 80 62.5
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 8.8e-15 83.6 80 62.5
Nitab4.5_0000901g0080 Nicotiana tabacum HOM05D004236 ORTHO05D000001 8.8e-15 83.6 75 66.7
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 8.8e-15 83.6 80 61.2
HPP92_027367 Vanilla planifolia HOM05D000680 ORTHO05D000738 8.8e-15 83.6 81 58.0
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 1.2e-14 83.2 80 63.8
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.2e-14 83.2 75 64.0
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 1.5e-14 82.8 54 81.5
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.5e-14 82.8 80 61.2
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 1.5e-14 82.8 80 60.0
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.5e-14 82.8 81 63.0
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 2.0e-14 82.4 80 62.5
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 2.6e-14 82.0 79 63.3
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 5.7e-14 80.9 80 58.8
Sopen03g007300 Solanum pennellii HOM05D004236 ORTHO05D004903 5.7e-14 80.9 80 61.2
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 7.5e-14 80.5 83 62.7
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 7.5e-14 80.5 80 60.0
BcaB08g34729 Brassica carinata HOM05D000498 ORTHO05D000354 9.8e-14 80.1 80 60.0
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 9.8e-14 80.1 77 61.0
THA.LOC104822507 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 9.8e-14 80.1 82 59.8
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 1.3e-13 79.7 80 61.2
BcaB06g28281 Brassica carinata HOM05D004236 ORTHO05D004903 2.8e-13 78.6 82 59.8
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 4.9e-13 77.8 78 60.3
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 4.9e-13 77.8 75 57.3
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 8.3e-13 77.0 75 57.3
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 8.3e-13 77.0 83 59.0
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 1.8e-12 75.9 80 57.5
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 1.8e-12 75.9 80 57.5
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.8e-12 75.9 80 57.5
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 5.4e-12 74.3 80 56.2
Zm00001eb334840 Zea mays HOM05D004236 ORTHO05D004903 1.6e-11 72.8 82 50.0
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 3.5e-11 71.6 46 76.1
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 3.5e-11 71.6 95 50.5
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 4.5e-11 71.2 48 77.1
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 4.5e-11 71.2 48 77.1
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 4.5e-11 71.2 48 77.1
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 4.5e-11 71.2 48 77.1
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 7.8e-11 70.5 87 52.9
Actinidia13574 Actinidia chinensis HOM05D004236 ORTHO05D004903 1.7e-10 69.3 79 54.4
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 5.0e-10 67.8 58 58.6
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 1.9e-09 65.9 66 54.5
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 1.9e-09 65.9 77 50.6
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 1.2e-08 63.2 80 47.5
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 1.6e-08 62.8 81 54.3
SHI07812 Sapria himalayana HOM05D004236 ORTHO05D004903 3.6e-08 61.6 39 76.9
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 4.0e-07 58.2 43 67.4


User provided reference genes

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