Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 8.5e-168 593.6 296 100.0
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 4.5e-153 544.7 320 87.2
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 1.3e-136 490.0 296 83.1
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 2.8e-131 472.2 296 79.4
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 4.1e-130 468.4 296 79.4
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 7.0e-130 467.6 296 80.7
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 1.2e-129 466.8 297 80.8
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 1.6e-129 466.5 296 78.4
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 4.5e-129 464.9 296 78.0
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 4.3e-127 458.4 297 77.4
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 5.6e-127 458.0 296 77.4
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 5.6e-127 458.0 296 77.4
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.2e-126 456.8 297 77.4
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 1.2e-126 456.8 296 76.4
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 2.8e-126 455.7 297 77.1
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 3.6e-126 455.3 298 75.8
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 1.8e-125 453.0 295 76.9
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 8.9e-125 450.7 296 78.0
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 8.9e-125 450.7 297 75.1
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 4.9e-123 444.9 296 76.4
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.8e-122 443.0 296 74.3
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 5.4e-122 441.4 284 77.1
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 7.0e-122 441.0 296 75.3
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.6e-121 439.9 296 73.6
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.7e-120 436.4 299 73.6
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 3.0e-120 435.6 309 73.1
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 5.0e-120 434.9 296 73.0
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 5.0e-120 434.9 296 73.6
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 1.9e-119 433.0 280 76.4
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 1.9e-119 433.0 299 73.9
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 2.5e-119 432.6 296 72.3
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 6.2e-118 427.9 296 73.0
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 8.0e-118 427.6 303 71.9
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.8e-117 426.4 300 72.3
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 1.8e-117 426.4 295 71.5
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 4.0e-117 425.2 252 84.1
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 5.2e-117 424.9 299 73.2
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 6.8e-117 424.5 300 72.0
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 8.9e-117 424.1 299 72.9
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 1.2e-116 423.7 295 71.5
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 2.0e-116 422.9 290 73.4
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 2.0e-116 422.9 296 70.9
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 2.6e-116 422.5 295 71.2
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 4.4e-116 421.8 296 71.3
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 5.8e-116 421.4 299 70.9
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 5.8e-116 421.4 298 72.1
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 1.7e-115 419.9 300 71.7
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 1.7e-115 419.9 296 72.0
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 1.9e-114 416.4 296 71.6
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 2.4e-114 416.0 297 70.7
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 9.2e-114 414.1 296 72.3
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 1.2e-113 413.7 311 67.5
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 1.2e-113 413.7 298 73.2
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.2e-113 413.7 296 69.3
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 3.5e-113 412.1 296 71.6
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 4.6e-113 411.8 233 84.5
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 1.3e-112 410.2 299 71.2
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 2.3e-112 409.5 297 70.7
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 3.0e-112 409.1 367 59.9
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 6.6e-112 407.9 296 70.6
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 6.6e-112 407.9 331 65.0
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 8.6e-112 407.5 295 71.5
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 1.1e-111 407.1 296 70.6
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.3e-111 405.6 295 68.5
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 4.3e-111 405.2 299 68.2
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 4.3e-111 405.2 249 80.3
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 4.3e-111 405.2 296 69.3
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 4.3e-111 405.2 296 69.9
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 7.3e-111 404.4 299 69.2
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 9.5e-111 404.1 300 68.3
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 1.2e-110 403.7 297 68.7
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 1.6e-110 403.3 296 69.9
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 1.6e-110 403.3 296 69.9
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 2.1e-110 402.9 296 70.3
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 3.6e-110 402.1 280 71.4
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 6.2e-110 401.4 298 69.1
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 6.2e-110 401.4 297 69.4
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 6.2e-110 401.4 297 69.7
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.8e-109 399.8 298 69.8
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 2.3e-109 399.4 298 68.8
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 3.1e-109 399.1 247 81.0
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 3.1e-109 399.1 299 66.9
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 5.2e-109 398.3 286 69.9
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 6.8e-109 397.9 298 69.1
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 6.8e-109 397.9 298 69.1
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 6.8e-109 397.9 298 69.1
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 6.8e-109 397.9 247 80.2
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 4.4e-108 395.2 295 68.1
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 4.4e-108 395.2 299 68.2
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 4.4e-108 395.2 299 68.9
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 7.5e-108 394.4 294 69.0
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 9.8e-108 394.0 303 69.6
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 9.8e-108 394.0 277 71.8
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 6.4e-107 391.3 283 68.6
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 8.3e-107 391.0 297 67.7
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.9e-106 389.8 331 63.7
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 3.5e-105 385.6 296 67.2
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.7e-104 383.3 296 67.6
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 5.1e-104 381.7 288 69.1
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 2.8e-102 375.9 295 67.5
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 6.2e-102 374.8 298 65.8
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.3e-101 372.9 299 65.2
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 8.9e-101 370.9 348 60.3
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.3e-99 367.1 300 66.0
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.9e-98 363.2 284 66.5
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 1.2e-97 360.5 224 78.1
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.7e-97 359.4 273 67.8
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 7.8e-97 357.8 294 61.9
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 1.3e-96 357.1 221 78.3
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 3.9e-96 355.5 269 66.5
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 4.7e-94 348.6 286 64.0
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 3.4e-92 342.4 257 68.9
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 9.9e-92 340.9 251 67.7
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 3.5e-89 332.4 265 67.5
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 7.8e-89 331.3 262 67.9
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 1.1e-85 320.9 261 65.9
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.4e-85 320.5 226 67.7
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 1.2e-84 317.4 221 68.8
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.4e-84 315.8 207 75.4
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 5.8e-84 315.1 225 66.2
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 1.3e-83 313.9 218 73.4
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.6e-81 307.0 213 69.5
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 1.5e-79 300.4 219 66.2
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 3.0e-72 276.2 287 54.4
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.0e-72 276.2 287 50.5
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.0e-69 265.8 424 40.1
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 1.1e-66 257.7 228 58.3
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.5e-63 247.3 142 85.9
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 4.3e-63 245.7 216 56.5
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 5.0e-59 232.3 148 77.0
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.6e-57 227.3 220 51.4
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.6e-57 227.3 220 51.4
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 6.1e-57 225.3 133 82.0
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.2e-51 206.8 185 55.7
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.5e-50 203.4 234 44.9
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.2e-50 203.0 250 43.2
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.2e-49 201.1 249 43.4
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 2.3e-48 196.8 155 63.9
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 8.2e-46 188.3 167 58.1
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 2.9e-43 179.9 138 66.7
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 9.4e-42 174.9 99 87.9
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 9.4e-42 174.9 112 77.7
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 8.8e-40 168.3 97 87.6
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 6.1e-33 145.6 109 62.4
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 7.5e-31 138.7 155 51.0
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 8.2e-30 135.2 80 80.0
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.6e-28 131.0 101 69.3
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 6.5e-27 125.6 91 70.3
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 8.5e-27 125.2 154 48.7
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 2.2e-22 110.5 67 79.1
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 3.7e-22 109.8 120 49.2
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 5.2e-08 62.8 177 32.2


User provided reference genes

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