Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 0.0e+00 1355.9 682 100.0
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 0.0e+00 1251.9 668 93.7
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 0.0e+00 1208.7 676 89.9
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 0.0e+00 1094.3 674 80.3
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 0.0e+00 1086.2 679 79.7
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 1.2e-310 1069.3 679 78.9
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 4.6e-310 1067.4 679 79.1
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 6.7e-309 1063.5 679 78.6
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 8.7e-309 1063.1 679 78.4
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 2.1e-302 1042.0 661 77.8
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 5.1e-301 1037.3 677 75.9
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 1.9e-300 1035.4 677 75.9
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 5.3e-298 1027.3 694 75.4
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 1.7e-296 1022.3 680 75.6
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 9.3e-295 1016.5 620 80.0
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 3.9e-293 1011.1 694 74.5
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 6.7e-293 1010.4 677 74.3
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.1e-292 1009.6 678 73.9
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 3.3e-292 1008.1 675 75.4
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 4.3e-292 1007.7 654 76.3
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.6e-291 1005.7 675 75.3
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 1.8e-290 1002.3 673 74.6
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 9.0e-290 1000.0 650 76.6
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.0e-289 998.8 677 75.2
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 3.4e-289 998.0 673 74.3
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.9e-288 995.0 689 73.3
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 3.8e-288 994.6 675 75.1
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 8.5e-288 993.4 673 74.6
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.1e-287 993.0 684 73.5
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 4.6e-286 987.6 656 74.7
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 1.5e-284 982.6 653 75.3
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 3.3e-284 981.5 678 73.2
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 4.3e-284 981.1 680 73.4
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.7e-283 979.2 677 73.4
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 3.7e-283 978.0 673 73.1
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 5.3e-282 974.2 679 72.6
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 2.0e-281 972.2 678 72.0
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 2.0e-281 972.2 679 72.3
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 1.0e-280 969.9 675 71.0
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 1.7e-280 969.1 601 80.2
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 2.9e-280 968.4 660 73.2
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 3.8e-280 968.0 678 72.4
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 6.5e-280 967.2 660 73.3
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 6.5e-280 967.2 655 73.3
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 2.5e-279 965.3 678 71.8
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 9.4e-279 963.4 661 72.0
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 1.6e-278 962.6 677 72.2
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 1.0e-277 959.9 602 79.2
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.4e-277 959.5 651 73.3
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 1.8e-277 959.1 652 72.4
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 2.3e-277 958.7 677 71.9
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 5.1e-277 957.6 651 76.8
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 6.7e-277 957.2 652 72.7
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.3e-275 953.0 649 72.9
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.3e-275 953.0 660 73.0
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 4.1e-274 948.0 604 79.0
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 7.0e-274 947.2 660 72.7
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 2.0e-273 945.7 606 77.4
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 3.4e-273 944.9 661 72.5
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 4.5e-273 944.5 651 72.7
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 4.5e-273 944.5 652 72.7
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 5.9e-273 944.1 650 72.5
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 3.8e-272 941.4 651 73.4
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 8.5e-272 940.3 660 72.1
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 9.4e-271 936.8 660 72.3
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 1.2e-270 936.4 676 71.0
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 1.2e-270 936.4 681 69.6
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 6.1e-270 934.1 653 71.7
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.4e-269 932.9 651 71.0
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 1.4e-269 932.9 650 71.1
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 1.1e-268 929.9 678 70.8
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 5.7e-268 927.5 652 73.0
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 8.2e-267 923.7 663 69.2
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 1.1e-266 923.3 655 70.5
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 1.4e-266 922.9 663 69.1
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 1.8e-266 922.5 649 71.0
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 1.8e-266 922.5 664 69.4
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 7.0e-266 920.6 659 71.2
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 5.0e-264 914.4 663 68.8
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 3.2e-263 911.8 662 68.3
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 2.7e-262 908.7 664 68.7
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 6.7e-261 904.0 606 75.2
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 8.8e-261 903.7 602 75.2
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 2.0e-260 902.5 603 72.8
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 3.7e-259 898.3 624 72.3
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 4.1e-258 894.8 602 72.3
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 1.0e-256 890.2 662 69.3
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 1.3e-256 889.8 653 69.4
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 5.0e-256 887.9 682 67.2
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 5.0e-256 887.9 543 79.9
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 1.9e-255 885.9 606 72.1
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 1.9e-255 885.9 603 73.6
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 2.7e-254 882.1 740 63.0
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 3.6e-254 881.7 651 70.0
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 1.3e-235 820.1 626 65.7
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 2.1e-230 802.7 654 63.6
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 3.6e-230 802.0 517 75.8
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 1.2e-228 797.0 780 55.5
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 3.6e-222 775.4 666 61.0
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 1.5e-220 770.0 774 52.6
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 6.4e-219 764.6 747 52.7
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 2.4e-218 762.7 843 50.1
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 3.2e-218 762.3 472 80.5
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 1.9e-215 753.1 680 59.0
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 1.1e-213 747.3 846 48.0
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 7.8e-201 704.5 454 76.7
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 2.2e-195 686.4 590 59.5
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 3.8e-195 685.6 637 54.5
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 7.9e-177 624.8 424 73.3
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.4e-165 587.4 542 56.8
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 6.5e-163 578.6 546 54.8
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 5.7e-159 565.5 437 66.8
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 1.0e-123 448.4 311 71.7
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.4e-117 427.9 401 56.6
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 5.0e-115 419.5 261 79.7
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 7.6e-103 379.0 341 57.5
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 7.3e-98 362.5 259 69.5
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 1.8e-96 357.8 215 79.1
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 1.5e-87 328.2 339 51.3
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 1.4e-80 305.1 548 38.3
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 6.5e-62 243.0 153 73.9
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 3.9e-43 180.6 134 65.7
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 3.7e-41 174.1 139 59.7
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 3.1e-40 171.0 438 30.4
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 4.4e-18 97.4 66 77.3
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 9.2e-16 89.7 80 60.0
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.1e-08 66.2 47 63.8
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 4.1e-08 64.3 49 67.3
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 1.2e-07 62.8 42 71.4
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 3.5e-07 61.2 48 60.4


User provided reference genes

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