Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 3.4e-239 831.2 423 100.0
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 9.8e-218 760.0 421 92.2
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 2.4e-179 632.5 423 75.9
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 1.2e-178 630.2 420 76.4
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 2.2e-177 625.9 379 80.5
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 8.4e-177 624.0 447 73.4
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 3.2e-176 622.1 377 82.0
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.7e-175 619.0 410 77.6
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.3e-174 615.9 418 74.4
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 5.1e-174 614.8 376 79.5
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 1.9e-173 612.8 427 73.5
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 2.5e-173 612.5 425 74.4
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 3.3e-173 612.1 415 76.1
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 1.2e-172 610.1 395 76.5
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 2.8e-172 609.0 380 80.5
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 1.8e-171 606.3 402 76.1
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 6.9e-171 604.4 412 74.0
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 4.4e-170 601.7 391 75.4
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 7.6e-170 600.9 401 74.1
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 9.9e-170 600.5 409 74.8
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 2.9e-169 599.0 413 74.1
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 4.9e-169 598.2 379 79.4
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 8.4e-169 597.4 377 78.5
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.1e-168 597.0 426 72.3
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 1.4e-168 596.7 422 73.2
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 5.4e-168 594.7 376 79.8
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 5.4e-168 594.7 389 75.1
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 7.1e-168 594.3 423 72.8
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 2.1e-167 592.8 388 75.8
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 2.7e-167 592.4 391 74.4
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 2.7e-167 592.4 411 72.7
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 2.7e-167 592.4 403 73.4
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 6.0e-167 591.3 400 74.5
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 1.0e-166 590.5 389 75.3
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 1.3e-166 590.1 418 72.2
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 1.7e-166 589.7 426 71.4
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.7e-166 589.7 399 74.4
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 2.3e-166 589.3 404 73.0
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 2.3e-166 589.3 403 74.2
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.3e-166 589.3 382 77.0
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 3.0e-166 589.0 414 72.7
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 3.0e-166 589.0 412 73.1
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 6.6e-166 587.8 402 72.6
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 8.7e-166 587.4 404 73.3
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 1.5e-165 586.6 380 77.1
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 1.5e-165 586.6 386 75.4
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 1.9e-165 586.3 388 75.3
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.9e-165 586.3 402 73.9
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.5e-165 585.9 436 70.6
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 3.3e-165 585.5 372 78.0
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 4.3e-165 585.1 415 71.8
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 7.3e-165 584.3 379 77.3
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 1.3e-164 583.6 389 73.5
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.1e-164 582.8 377 76.1
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 8.1e-164 580.9 375 76.3
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 1.4e-163 580.1 404 72.5
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 3.8e-161 572.0 394 74.6
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 4.9e-161 571.6 428 68.7
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 4.9e-161 571.6 424 71.2
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 1.9e-160 569.7 389 74.0
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 1.6e-159 566.6 376 74.7
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.1e-159 566.2 423 70.4
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 5.1e-158 561.6 420 68.1
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 1.9e-157 559.7 425 68.5
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 7.4e-157 557.8 412 69.4
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 1.3e-156 557.0 400 73.0
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 8.1e-156 554.3 420 69.0
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 2.0e-154 549.7 366 74.3
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 2.6e-154 549.3 363 75.8
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 3.4e-154 548.9 375 72.5
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 3.4e-154 548.9 370 73.8
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 4.5e-154 548.5 375 71.7
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 4.5e-154 548.5 367 73.8
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 1.3e-153 547.0 372 72.0
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 2.2e-153 546.2 376 71.0
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 2.2e-153 546.2 367 74.4
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 2.9e-153 545.8 375 73.6
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 2.9e-153 545.8 367 74.4
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 4.9e-153 545.0 367 73.8
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 2.4e-152 542.7 374 73.3
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.3e-150 537.0 373 71.3
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 5.6e-149 531.6 415 67.5
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 9.6e-149 530.8 374 70.9
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 9.6e-149 530.8 400 69.8
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 9.6e-149 530.8 400 69.8
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 1.3e-148 530.4 374 70.9
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 5.8e-146 521.5 386 67.1
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 1.9e-144 516.5 349 73.6
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 9.7e-141 504.2 350 73.4
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 1.4e-136 490.3 402 61.7
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 4.2e-136 488.8 397 63.0
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 1.8e-134 483.4 384 63.0
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 3.3e-133 479.2 398 61.1
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 9.7e-133 477.6 302 79.1
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 1.1e-131 474.2 404 59.4
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 1.4e-131 473.8 329 72.6
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 4.5e-130 468.8 390 58.7
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.2e-127 460.7 390 57.9
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 3.9e-126 455.7 386 58.8
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 6.3e-124 448.4 300 74.0
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 8.2e-124 448.0 383 59.3
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 7.0e-123 444.9 353 66.0
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 5.9e-122 441.8 416 57.7
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 8.5e-121 438.0 375 57.6
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 1.1e-117 427.6 378 57.4
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 1.5e-117 427.2 363 60.9
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.6e-117 426.4 405 54.8
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 8.2e-116 421.4 367 58.0
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 4.1e-115 419.1 351 63.5
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 8.5e-113 411.4 388 54.9
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 1.6e-111 407.1 382 57.3
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 5.7e-109 398.7 264 75.4
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 1.3e-108 397.5 340 59.7
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 1.1e-107 394.4 355 58.6
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.8e-107 393.7 362 56.1
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 7.0e-107 391.7 369 57.5
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 2.7e-106 389.8 316 69.0
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 5.9e-106 388.7 257 75.1
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 2.2e-92 343.6 225 74.2
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 8.3e-92 341.7 227 71.4
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 4.5e-90 335.9 352 52.6
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 7.0e-75 285.4 202 73.3
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 3.8e-60 236.5 329 42.2
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 8.4e-60 235.3 175 68.6
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 4.6e-58 229.6 187 63.1
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 7.8e-58 228.8 169 70.4
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 3.8e-52 209.9 240 52.1
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 1.2e-42 178.3 120 70.8
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 6.7e-41 172.6 118 72.0
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 5.6e-40 169.5 112 72.3
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 2.8e-39 167.2 112 75.0
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 2.8e-39 167.2 159 57.2
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 3.7e-39 166.8 111 73.9
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 4.8e-39 166.4 112 74.1
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 1.8e-38 164.5 146 56.8
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 2.0e-37 161.0 116 68.1
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 4.5e-37 159.8 117 68.4
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 1.7e-36 157.9 112 67.9
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.4e-35 154.8 173 47.4
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 3.5e-34 150.2 100 75.0
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 6.9e-30 136.0 104 70.2
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 3.4e-29 133.7 91 74.7
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 3.9e-25 120.2 91 69.2
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 8.7e-25 119.0 348 26.4
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 9.7e-24 115.5 346 26.6
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 2.6e-21 107.5 139 44.6
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 1.7e-20 104.8 75 68.0
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 1.7e-20 104.8 75 68.0
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 1.1e-19 102.1 101 58.4
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 3.2e-19 100.5 73 74.0
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 5.5e-19 99.8 79 63.3
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 2.1e-18 97.8 73 65.8
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 2.7e-18 97.4 71 67.6
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-17 95.1 57 82.5
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 3.9e-17 93.6 63 74.6
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 5.7e-16 89.7 62 71.0
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 5.7e-16 89.7 62 71.0
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 5.7e-16 89.7 62 71.0
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 5.7e-16 89.7 62 71.0
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 3.7e-15 87.0 62 71.0
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 4.8e-15 86.7 59 67.8
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 3.1e-14 84.0 141 39.0
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 1.5e-13 81.6 67 59.7
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 7.7e-13 79.3 58 65.5
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 7.7e-13 79.3 58 65.5
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 6.5e-12 76.3 64 65.6
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 4.2e-11 73.6 71 56.3
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 2.7e-10 70.9 76 51.3
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 1.4e-09 68.6 245 29.0
MSTRG.795 Avicennia marina HOM05D003438 ORTHO05D004235 2.3e-09 67.8 338 26.9
BcaB06g26914 Brassica carinata HOM05D004238 ORTHO05D004934 3.0e-09 67.4 56 60.7
Phvul.005G022900 Phaseolus vulgaris HOM05D003438 ORTHO05D004235 6.7e-09 66.2 301 29.9
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 3.3e-08 63.9 402 25.4
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 3.3e-08 63.9 332 26.5
BcaB06g26915 Brassica carinata HOM05D004238 ORTHO05D004934 4.4e-08 63.5 53 62.3
Dinv16582 Davidia involucrata HOM05D003438 ORTHO05D004235 4.4e-08 63.5 307 29.6
Psat4g113520 Pisum sativum HOM05D003438 ORTHO05D004235 5.7e-08 63.2 328 26.2
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 1.3e-07 62.0 307 29.3
Lalb_Chr16g0392021 Lupinus albus HOM05D003438 ORTHO05D004235 2.2e-07 61.2 357 27.5
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 2.8e-07 60.8 305 26.6
EL10Ac6g14628 Beta vulgaris HOM05D003438 ORTHO05D004235 2.4e-06 57.8 346 27.2
CANSAT64G0670 Cannabis sativa HOM05D003438 ORTHO05D004235 2.4e-06 57.8 352 27.0
Glyma.15G276800 Glycine max HOM05D003438 ORTHO05D004235 3.1e-06 57.4 331 26.9
SGA_v2.0_scaffold16G07841 Striga asiatica HOM05D003438 ORTHO05D004235 7.0e-06 56.2 321 24.0
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 7.0e-06 56.2 53 52.8


User provided reference genes

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