Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 3.9e-143 511.5 275 100.0
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 2.5e-121 439.1 277 84.5
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 3.5e-99 365.5 283 72.4
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 1.5e-89 333.6 274 65.0
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 9.5e-89 330.9 278 64.4
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 1.2e-88 330.5 278 64.4
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 8.1e-88 327.8 281 64.1
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 1.4e-87 327.0 278 63.3
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 1.8e-87 326.6 259 67.6
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 2.3e-87 326.2 276 65.9
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 5.2e-87 325.1 277 62.8
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 2.6e-86 322.8 280 63.6
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 2.6e-86 322.8 275 64.0
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 1.3e-85 320.5 213 75.1
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 3.7e-85 318.9 264 63.6
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 6.4e-85 318.2 278 61.9
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 8.3e-85 317.8 272 63.2
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 1.4e-84 317.0 264 62.9
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 1.9e-84 316.6 261 65.5
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.9e-84 316.6 261 65.5
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 5.4e-84 315.1 264 61.4
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 7.1e-84 314.7 260 62.3
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 9.2e-84 314.3 207 75.4
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 9.2e-84 314.3 269 62.1
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 1.2e-83 313.9 221 72.4
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.6e-83 313.5 261 65.5
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 2.1e-83 313.2 282 62.1
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 3.5e-83 312.4 177 81.9
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 3.5e-83 312.4 261 65.1
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 6.0e-83 311.6 243 65.0
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 7.8e-83 311.2 258 64.7
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.3e-82 310.5 261 64.4
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 1.3e-82 310.5 244 65.2
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 2.3e-82 309.7 243 64.6
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 3.9e-82 308.9 177 84.7
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 3.9e-82 308.9 282 63.8
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 5.1e-82 308.5 205 73.2
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 8.6e-82 307.8 265 64.2
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 1.9e-81 306.6 216 70.4
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 1.9e-81 306.6 176 84.7
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 1.9e-81 306.6 174 81.6
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 4.3e-81 305.4 276 61.2
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 5.6e-81 305.1 178 81.5
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 5.6e-81 305.1 268 63.4
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 1.2e-80 303.9 178 82.6
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 1.6e-80 303.5 236 65.3
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 2.1e-80 303.1 179 80.4
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 2.8e-80 302.8 264 61.0
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 1.1e-79 300.8 178 80.9
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 1.4e-79 300.4 179 78.8
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 1.8e-79 300.1 176 78.4
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.8e-79 300.1 257 62.3
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 1.8e-79 300.1 267 60.7
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 3.1e-79 299.3 206 70.9
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 4.0e-79 298.9 180 78.9
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 4.0e-79 298.9 252 63.1
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 4.0e-79 298.9 212 69.3
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 6.8e-79 298.1 178 79.8
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 8.9e-79 297.7 180 78.9
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 8.9e-79 297.7 180 78.9
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 1.2e-78 297.4 261 59.8
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 2.6e-78 296.2 212 68.4
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.6e-78 296.2 261 60.9
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 3.4e-78 295.8 261 60.2
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 3.4e-78 295.8 249 61.8
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 4.4e-78 295.4 180 78.3
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 5.8e-78 295.0 222 65.8
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 9.9e-78 294.3 174 79.9
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 1.3e-77 293.9 180 78.3
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 1.3e-77 293.9 262 59.9
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 1.3e-77 293.9 257 61.9
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 2.9e-77 292.7 177 79.1
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 3.7e-77 292.4 213 67.1
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 8.4e-77 291.2 178 76.4
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 8.4e-77 291.2 257 61.5
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 7.1e-76 288.1 257 58.4
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 9.2e-76 287.7 256 59.0
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 6.0e-75 285.0 173 80.3
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 1.0e-74 284.3 162 79.6
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 3.9e-74 282.3 278 58.6
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 5.1e-74 282.0 201 70.6
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 8.6e-74 281.2 257 57.2
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 1.1e-73 280.8 178 72.5
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 1.5e-73 280.4 176 73.9
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 3.3e-73 279.3 241 60.6
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 4.3e-73 278.9 176 75.0
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 4.3e-73 278.9 173 75.7
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 1.6e-72 276.9 175 72.0
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 2.1e-72 276.6 162 79.6
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 3.6e-72 275.8 181 71.3
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 4.7e-72 275.4 181 71.3
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 2.4e-71 273.1 174 73.6
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 3.1e-71 272.7 174 73.6
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 1.2e-70 270.8 217 62.7
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 1.2e-70 270.8 150 82.7
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 3.4e-70 269.2 178 71.3
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 9.3e-68 261.2 278 55.0
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 7.3e-65 251.5 173 68.8
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 2.0e-62 243.4 177 68.4
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 7.6e-62 241.5 178 64.6
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 7.3e-57 224.9 186 59.1
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 1.1e-55 221.1 187 55.6
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 6.9e-55 218.4 123 81.3
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 4.2e-52 209.1 165 61.2
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.8e-47 193.7 185 51.4
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 4.5e-46 189.1 184 47.8
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.4e-44 184.1 177 52.0
SEGI_30520 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 1.8e-34 150.6 93 72.0
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 2.5e-33 146.7 163 55.8
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 1.3e-32 144.4 182 51.6
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 5.9e-22 109.0 103 60.2
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 5.0e-21 105.9 171 36.8
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 8.5e-21 105.1 161 45.3
Cre09.g401350 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D008046 1.1e-20 104.8 174 36.2
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 2.3e-18 97.1 137 48.2
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.8e-16 90.1 97 57.7
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 2.8e-16 90.1 97 57.7
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.8e-16 90.1 97 57.7
SEGI_17791 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 2.4e-15 87.0 60 63.3
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 4.1e-15 86.3 97 55.7
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 2.1e-11 73.9 75 61.3
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 8.8e-10 68.6 47 70.2
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 3.7e-08 63.2 67 53.7
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 8.2e-08 62.0 67 52.2
arahy.Tifrunner.gnm1.ann1.PN4BM4 Arachis hypogaea HOM05D001163 ORTHO05D001769 2.7e-06 57.0 83 49.4
arahy.Tifrunner.gnm1.ann1.QNQ2AZ Arachis hypogaea HOM05D006376 ORTHO05D008046 2.7e-06 57.0 83 49.4


User provided reference genes

Program Settings