Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 6.9e-153 543.9 266 100.0
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 1.2e-144 516.5 267 94.4
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.5e-110 402.5 261 70.9
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 3.0e-108 395.6 260 72.7
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.5e-107 393.3 260 70.4
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 2.6e-107 392.5 259 74.5
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 7.5e-107 391.0 260 71.9
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 7.5e-107 391.0 260 70.4
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 1.3e-106 390.2 259 70.3
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.7e-106 389.8 261 70.1
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 1.1e-105 387.1 260 70.4
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 1.8e-105 386.3 261 71.3
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 1.2e-104 383.6 260 70.0
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.0e-104 382.9 259 69.9
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 5.9e-104 381.3 262 71.0
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 5.0e-103 378.3 259 68.7
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.1e-102 377.1 259 68.7
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 2.5e-102 375.9 259 68.3
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 1.2e-101 373.6 260 68.8
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 4.7e-101 371.7 259 68.7
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 6.1e-101 371.3 261 67.8
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 8.0e-101 370.9 259 68.7
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 1.5e-99 366.7 260 66.9
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 5.7e-99 364.8 261 66.7
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 9.8e-99 364.0 258 65.9
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.3e-98 363.6 260 64.6
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.7e-98 363.2 259 66.8
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 6.4e-98 361.3 259 65.6
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 8.3e-98 360.9 262 64.5
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 1.1e-97 360.5 260 65.8
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 7.0e-97 357.8 260 65.0
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 9.2e-97 357.5 298 58.7
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 9.2e-97 357.5 259 65.3
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.2e-96 357.1 260 65.0
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.2e-96 357.1 279 62.0
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 2.0e-96 356.3 260 63.5
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 2.0e-96 356.3 263 65.0
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.0e-96 356.3 263 65.0
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 2.7e-96 355.9 261 66.3
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.5e-96 355.5 263 65.0
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.3e-95 353.6 259 65.3
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 1.3e-95 353.6 260 65.4
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.7e-95 353.2 262 63.0
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 3.0e-95 352.4 259 63.3
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 5.0e-95 351.7 264 66.3
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 5.0e-95 351.7 262 62.6
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 6.6e-95 351.3 263 66.5
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 2.5e-94 349.4 259 62.5
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 3.3e-94 349.0 223 69.5
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 5.6e-94 348.2 259 65.6
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.3e-94 347.8 256 65.2
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 9.5e-94 347.4 280 62.5
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 9.5e-94 347.4 260 65.0
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 1.2e-93 347.1 263 63.9
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 4.7e-93 345.1 240 68.3
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 6.2e-93 344.7 259 63.3
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.0e-93 344.4 208 74.0
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.0e-93 344.4 208 74.0
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 8.0e-93 344.4 219 73.1
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 1.4e-92 343.6 259 62.2
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.1e-92 342.4 253 64.8
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 8.9e-92 340.9 262 63.0
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 2.0e-91 339.7 260 62.3
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 2.6e-91 339.3 265 61.5
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 3.4e-91 339.0 259 64.1
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 4.4e-91 338.6 259 62.2
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.9e-89 333.2 243 65.4
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 9.2e-89 330.9 259 62.5
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 9.2e-89 330.9 264 60.6
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.2e-88 330.5 261 63.6
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.6e-88 330.1 273 59.7
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 2.0e-88 329.7 291 57.7
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 4.6e-88 328.6 260 60.8
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 4.6e-88 328.6 262 61.5
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.0e-87 327.4 301 56.5
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 2.3e-87 326.2 260 58.1
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 6.6e-87 324.7 262 64.1
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.5e-86 323.6 233 61.8
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 3.3e-86 322.4 260 61.5
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 9.5e-86 320.9 259 60.6
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.1e-85 319.7 250 62.0
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 2.1e-85 319.7 326 52.5
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 2.8e-85 319.3 200 71.0
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 3.1e-84 315.8 237 62.4
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 6.8e-84 314.7 218 64.2
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 4.4e-83 312.0 235 63.8
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 7.5e-83 311.2 239 61.5
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.9e-83 310.8 239 61.1
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 2.2e-82 309.7 280 54.6
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 9.2e-81 304.3 261 57.5
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 4.6e-80 302.0 221 64.3
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 7.8e-80 301.2 241 59.3
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 7.3e-78 294.7 275 54.5
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.5e-78 294.3 210 65.2
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 4.7e-77 292.0 259 54.1
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 1.1e-76 290.8 255 56.9
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 2.4e-76 289.7 259 55.6
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 8.9e-76 287.7 225 62.2
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.1e-72 276.6 200 65.0
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 7.8e-72 274.6 303 49.5
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 1.5e-70 270.4 179 69.3
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 9.6e-70 267.7 219 58.0
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 3.1e-68 262.7 183 64.5
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.4e-65 253.8 266 50.4
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.9e-65 253.4 183 65.6
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 3.2e-65 252.7 236 54.7
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.6e-61 240.4 187 61.5
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 2.9e-58 229.6 219 53.0
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 7.1e-57 224.9 197 56.9
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 3.5e-56 222.6 187 57.8
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 3.9e-55 219.2 173 62.4
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 1.1e-54 217.6 178 58.4
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.6e-53 213.8 186 56.5
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 6.2e-53 211.8 225 46.7
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 6.2e-53 211.8 216 50.9
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 6.2e-53 211.8 212 46.7
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.4e-52 210.7 220 49.5
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 2.9e-50 203.0 169 56.8
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 6.4e-50 201.8 151 64.9
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 1.1e-49 201.1 168 61.9
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 9.3e-49 198.0 141 61.7
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 1.8e-47 193.7 141 63.8
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 6.7e-47 191.8 153 59.5
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 7.4e-46 188.3 130 66.2
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 2.1e-45 186.8 207 46.4
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 2.7e-40 169.9 132 62.1
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 6.0e-40 168.7 127 64.6
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 1.1e-38 164.5 116 64.7
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.2e-37 160.2 194 42.8
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.0e-35 153.7 85 81.2
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.0e-35 153.7 113 59.3
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.3e-34 151.0 85 80.0
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.7e-34 150.6 85 80.0
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 2.9e-34 149.8 217 39.6
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 5.0e-34 149.1 85 77.6
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 7.2e-33 145.2 148 52.0
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 6.1e-32 142.1 352 29.5
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.1e-28 128.3 240 36.7
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.9e-27 125.6 97 59.8
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 7.7e-27 125.2 231 35.5
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 2.2e-26 123.6 97 55.7
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 1.9e-25 120.6 294 28.9
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 2.7e-24 116.7 71 74.6
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 5.1e-23 112.5 75 66.7
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 6.7e-23 112.1 69 72.5
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.3e-22 109.8 66 69.7
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.4e-22 109.4 66 65.2
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.7e-22 108.2 66 68.2
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.8e-21 106.7 71 66.2
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 3.4e-19 99.8 74 59.5
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 3.9e-15 86.3 92 52.2
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 6.7e-15 85.5 88 53.4
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.8e-15 85.1 83 53.0
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 3.3e-14 83.2 59 61.0
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 4.1e-12 76.3 85 50.6
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 5.9e-11 72.4 56 57.1
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 1.0e-10 71.6 91 44.0
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 1.5e-09 67.8 61 52.5
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 1.2e-08 64.7 58 51.7
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 2.1e-08 63.9 137 29.9
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 1.2e-06 58.2 66 48.5


User provided reference genes

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