Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 6.3e-110 401.0 230 100.0
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 3.2e-98 362.1 228 85.5
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 2.4e-61 239.6 152 69.7
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 7.0e-61 238.0 154 70.1
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 3.5e-60 235.7 166 67.5
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 5.9e-60 235.0 147 72.1
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 7.8e-60 234.6 154 68.8
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 1.3e-59 233.8 154 70.1
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 1.7e-59 233.4 156 69.9
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 6.6e-59 231.5 147 71.4
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 3.3e-58 229.2 147 70.7
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 5.6e-58 228.4 152 65.1
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 4.7e-57 225.3 151 66.9
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 4.7e-57 225.3 158 65.8
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 8.0e-57 224.6 151 65.6
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.0e-56 224.2 152 66.4
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 1.0e-56 224.2 150 69.3
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.4e-56 223.8 152 66.4
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.4e-56 223.8 152 66.4
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 4.0e-56 222.2 150 68.7
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 5.2e-56 221.9 150 68.0
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 5.2e-56 221.9 150 68.0
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 2.6e-55 219.5 147 68.0
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 5.8e-55 218.4 152 65.8
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 5.8e-55 218.4 168 61.3
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 7.5e-55 218.0 161 65.8
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 7.5e-55 218.0 152 65.8
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 9.8e-55 217.6 161 64.6
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.3e-54 217.2 168 61.9
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.7e-54 216.9 152 63.8
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.7e-54 216.9 152 63.8
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 2.9e-54 216.1 152 63.2
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 2.9e-54 216.1 151 65.6
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 2.9e-54 216.1 164 61.0
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 2.9e-54 216.1 150 64.7
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 8.3e-54 214.5 147 64.6
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 8.3e-54 214.5 148 63.5
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.1e-53 214.2 151 65.6
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 2.4e-53 213.0 147 68.0
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 5.4e-53 211.8 147 65.3
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 5.4e-53 211.8 161 64.0
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 5.4e-53 211.8 153 62.1
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 5.4e-53 211.8 147 67.3
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 9.2e-53 211.1 161 64.0
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 2.0e-52 209.9 151 64.9
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 2.0e-52 209.9 147 64.6
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 3.5e-52 209.1 161 64.0
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 3.5e-52 209.1 161 63.4
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 3.5e-52 209.1 161 63.4
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.0e-51 207.6 148 63.5
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 1.7e-51 206.8 156 63.5
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.7e-51 206.8 156 63.5
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 1.7e-51 206.8 173 56.6
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 3.0e-51 206.1 173 56.6
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 5.0e-51 205.3 156 62.8
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 5.0e-51 205.3 148 63.5
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 5.0e-51 205.3 148 63.5
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 6.6e-51 204.9 154 60.4
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.9e-50 203.4 144 63.2
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 1.9e-50 203.4 161 59.6
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 3.3e-50 202.6 147 63.3
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 7.3e-50 201.4 151 60.9
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 9.5e-50 201.1 150 59.3
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 9.5e-50 201.1 149 61.1
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 1.2e-49 200.7 161 58.4
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 2.8e-49 199.5 148 62.8
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 2.8e-49 199.5 147 63.9
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 6.2e-49 198.4 147 60.5
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 1.1e-48 197.6 161 57.8
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.4e-48 197.2 152 56.6
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 4.0e-48 195.7 163 56.4
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 4.0e-48 195.7 149 61.1
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.5e-47 193.7 144 59.0
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 4.4e-47 192.2 154 57.8
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 5.8e-47 191.8 145 61.4
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 5.8e-47 191.8 145 61.4
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.7e-46 190.3 152 54.6
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 2.2e-46 189.9 141 59.6
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 2.2e-46 189.9 144 61.1
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 2.2e-46 189.9 144 61.1
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 6.4e-46 188.3 156 55.8
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 6.4e-46 188.3 145 60.7
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 8.3e-46 188.0 146 58.2
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 1.1e-45 187.6 147 57.1
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.9e-45 186.8 141 58.9
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 1.2e-44 184.1 147 57.8
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-44 183.7 145 59.3
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-44 183.7 145 59.3
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-44 183.7 145 59.3
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-44 183.7 145 59.3
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-44 183.7 145 59.3
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 2.1e-44 183.3 147 58.5
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 8.6e-43 177.9 144 57.6
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.9e-42 176.8 149 56.4
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 9.5e-42 174.5 168 56.0
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 1.2e-41 174.1 167 53.9
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 3.6e-41 172.6 136 55.9
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 6.2e-41 171.8 152 52.0
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 3.1e-40 169.5 132 59.1
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 2.6e-39 166.4 98 75.5
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 2.6e-39 166.4 149 49.7
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 7.5e-39 164.9 140 55.7
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 1.7e-38 163.7 151 52.3
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 1.7e-38 163.7 136 57.4
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.7e-38 162.5 145 55.2
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 6.4e-38 161.8 159 48.4
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.1e-37 161.0 104 68.3
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 2.4e-37 159.8 151 51.7
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 3.2e-37 159.5 135 51.9
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 1.2e-36 157.5 121 62.0
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.3e-35 154.1 136 49.3
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.7e-35 153.7 98 70.4
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 2.5e-34 149.8 148 50.7
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 4.3e-34 149.1 132 52.3
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 7.3e-34 148.3 114 60.5
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 1.2e-33 147.5 129 58.9
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 3.1e-32 142.9 106 57.5
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 3.4e-31 139.4 148 45.3
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 3.4e-31 139.4 112 59.8
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 6.4e-30 135.2 148 43.2
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 4.6e-28 129.0 134 47.0
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 7.8e-28 128.3 133 42.1
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 3.9e-27 125.9 100 57.0
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 6.6e-27 125.2 97 58.8
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 8.7e-27 124.8 161 45.3
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 8.7e-27 124.8 161 45.3
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 4.8e-25 119.0 102 53.9
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 6.2e-25 118.6 108 50.9
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 6.9e-24 115.2 89 58.4
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 2.6e-23 113.2 79 63.3
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.9e-22 109.8 89 56.2
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 1.9e-21 107.1 136 38.2
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 5.4e-21 105.5 56 76.8
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 1.9e-18 97.1 132 42.4
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 3.6e-17 92.8 74 51.4
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 4.9e-14 82.4 77 54.5
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 9.3e-13 78.2 64 57.8
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 9.3e-13 78.2 89 47.2
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 3.5e-12 76.3 67 53.7
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 6.7e-11 72.0 48 66.7
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.5e-10 70.9 50 64.0
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.5e-10 70.1 45 68.9
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 3.3e-10 69.7 64 53.1
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 5.6e-10 68.9 58 51.7
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 2.1e-09 67.0 64 48.4
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 1.4e-08 64.3 32 78.1
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 1.8e-08 63.9 47 61.7
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.5e-07 60.8 230 24.3
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 7.6e-07 58.5 59 49.2
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 4.9e-06 55.8 50 54.0


User provided reference genes

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