Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 0.0e+00 1977.6 998 100.0
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 0.0e+00 1776.9 1000 90.9
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 0.0e+00 1157.1 1003 61.3
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 2.2e-305 1052.4 1023 57.2
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 1.5e-304 1049.7 1020 57.8
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 4.5e-290 1001.5 1013 54.4
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 1.9e-288 996.1 1015 56.1
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 7.3e-280 967.6 1017 55.3
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 9.5e-280 967.2 1020 54.3
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 9.8e-277 957.2 1016 54.0
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 3.5e-266 922.2 1016 53.1
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 1.6e-263 913.3 1024 53.1
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 4.1e-259 898.7 1017 51.8
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 2.3e-257 892.9 1011 51.3
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 1.6e-255 886.7 1065 49.6
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 3.6e-255 885.6 1010 51.9
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 1.5e-253 880.2 1010 51.5
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 7.8e-250 867.8 1011 51.7
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 1.3e-249 867.1 1021 50.5
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 6.2e-247 858.2 1018 51.1
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.4e-246 857.1 1015 51.0
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 6.9e-246 854.7 1015 51.0
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.5e-245 853.6 1016 51.9
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 3.2e-243 845.9 1008 50.4
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 1.4e-235 820.5 893 54.4
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.2e-227 792.7 1002 49.6
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 4.6e-226 788.9 1066 46.0
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 4.1e-222 775.8 1066 45.7
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 2.6e-221 773.1 998 47.4
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 2.1e-218 763.5 1019 47.0
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 2.3e-217 760.0 1019 46.6
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 1.1e-216 757.7 1011 45.5
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 2.8e-215 753.1 1015 45.9
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 3.1e-214 749.6 882 50.3
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 7.7e-213 745.0 1018 46.2
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.1e-211 741.1 1022 45.3
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 2.7e-210 736.5 1018 44.8
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 3.3e-208 729.6 1010 45.1
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 6.5e-204 715.3 985 45.1
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 6.1e-202 708.8 792 51.3
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 2.0e-200 703.7 1012 44.1
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.4e-198 696.8 827 50.7
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 7.0e-198 695.3 1032 43.5
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 5.9e-197 692.2 1008 43.2
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 1.0e-196 691.4 1009 43.3
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 4.2e-195 686.0 1024 43.0
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 3.3e-192 676.4 1031 42.3
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 5.0e-188 662.5 1032 42.9
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 2.5e-187 660.2 1028 42.0
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 4.2e-187 659.4 1022 42.4
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 4.4e-184 649.4 1002 41.4
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 1.1e-182 644.8 1018 41.3
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 2.4e-182 643.7 1039 41.7
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 9.1e-182 641.7 1012 41.3
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 4.5e-181 639.4 1009 41.2
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 5.9e-181 639.0 1017 41.5
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 1.5e-179 634.4 1016 43.1
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 7.2e-179 632.1 1014 41.6
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 2.1e-178 630.6 1015 43.1
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 2.1e-178 630.6 1013 41.0
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 1.0e-177 628.2 1012 41.6
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 1.5e-176 624.4 914 44.2
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 4.4e-176 622.9 1006 41.2
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 2.2e-175 620.5 1015 40.2
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 1.8e-174 617.5 1025 42.0
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 2.4e-174 617.1 1011 40.5
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 2.4e-174 617.1 1009 41.4
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 2.4e-174 617.1 1011 40.5
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 3.1e-174 616.7 1011 40.4
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 2.0e-173 614.0 1009 41.4
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 5.0e-172 609.4 1008 40.4
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 1.9e-171 607.4 1010 40.9
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 9.5e-171 605.1 1011 40.6
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 9.5e-171 605.1 998 41.5
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 1.6e-170 604.4 1008 40.8
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.6e-170 604.4 779 47.6
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 3.0e-169 600.1 1002 41.1
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 5.8e-168 595.9 1032 40.4
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 7.5e-168 595.5 1007 41.9
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 9.8e-168 595.1 1012 41.4
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 2.9e-167 593.6 1014 41.6
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 4.1e-166 589.7 1009 40.3
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 5.4e-166 589.3 1011 41.0
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 2.1e-162 577.4 999 40.7
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 2.1e-162 577.4 886 41.3
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 3.4e-160 570.1 1018 39.2
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.7e-159 567.8 1018 39.2
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 9.2e-158 562.0 1016 40.5
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 3.1e-153 547.0 1012 39.1
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 5.4e-150 536.2 1021 40.0
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 2.2e-143 514.2 904 39.0
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 3.9e-140 503.4 999 37.1
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 2.9e-135 487.3 668 45.1
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 8.1e-130 469.2 1009 36.6
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 9.9e-128 462.2 935 37.3
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 2.2e-127 461.1 978 37.0
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 6.0e-117 426.4 973 34.0
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 3.9e-116 423.7 1046 33.3
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 6.7e-116 422.9 899 35.2
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 8.4e-111 406.0 622 41.6
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 1.2e-109 402.1 1016 34.3
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.1e-105 389.0 462 50.9
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.9e-103 380.9 474 47.0
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 1.6e-101 375.2 619 37.6
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 6.7e-100 369.8 609 42.2
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.2e-96 359.0 462 47.6
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 6.1e-93 346.7 1040 30.7
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 2.4e-89 334.7 411 48.4
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 6.1e-85 320.1 427 47.3
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.0e-84 319.3 377 50.4
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 5.7e-83 313.5 1080 28.9
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 7.7e-80 303.1 1007 29.5
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 7.7e-72 276.6 958 28.1
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.6e-69 268.9 248 60.1
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 5.4e-65 253.8 321 48.0
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 8.6e-63 246.5 302 48.0
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.8e-57 228.8 308 46.8
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 2.7e-48 198.4 247 50.6
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.0e-43 182.2 491 32.6
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 3.3e-38 164.9 1008 24.5
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 8.1e-37 160.2 368 33.7
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 1.4e-25 122.9 156 47.4
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 6.4e-18 97.4 88 67.0
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 5.4e-17 94.4 188 38.3
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 8.1e-13 80.5 290 29.3
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 3.1e-12 78.6 257 26.5
Actinidia34180 Actinidia chinensis HOM05D005720 ORTHO05D006984 3.2e-09 68.6 121 43.0
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 3.2e-09 68.6 172 32.0
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 1.6e-08 66.2 132 37.9
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 1.3e-07 63.2 190 30.0
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 3.0e-07 62.0 66 57.6
Actinidia30732 Actinidia chinensis HOM05D005720 ORTHO05D006984 1.5e-06 59.7 171 33.9
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 5.6e-06 57.8 185 30.3


User provided reference genes

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