Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G032500 Populus trichocarpa HOM05D003654 ORTHO05D004176 2.4e-38 161.8 88 100.0
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.0e-08 62.4 103 39.8
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 3.4e-08 61.6 92 42.4
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 5.9e-08 60.8 35 80.0
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 1.3e-07 59.7 83 41.0
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.7e-07 59.3 83 42.2
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 2.2e-07 58.9 90 52.2
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 3.8e-07 58.2 35 74.3
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 3.8e-07 58.2 96 37.5
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 3.8e-07 58.2 35 77.1
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 5.0e-07 57.8 93 38.7
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.0e-07 57.8 88 42.0
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 6.5e-07 57.4 87 52.9
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 6.5e-07 57.4 35 74.3
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 6.5e-07 57.4 35 74.3
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 8.5e-07 57.0 93 40.9
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 8.5e-07 57.0 35 74.3
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 8.5e-07 57.0 35 74.3
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 8.5e-07 57.0 35 74.3
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 1.1e-06 56.6 59 47.5
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 1.1e-06 56.6 35 74.3
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 1.1e-06 56.6 35 74.3
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 1.4e-06 56.2 35 74.3
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 1.4e-06 56.2 35 71.4
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 1.4e-06 56.2 35 71.4
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 1.4e-06 56.2 35 71.4
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 1.4e-06 56.2 35 74.3
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.9e-06 55.8 35 71.4
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.9e-06 55.8 35 71.4
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 1.9e-06 55.8 35 71.4
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 1.9e-06 55.8 56 51.8
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 1.9e-06 55.8 35 71.4
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.9e-06 55.8 35 71.4
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 1.9e-06 55.8 81 48.1
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 1.9e-06 55.8 35 71.4
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 2.5e-06 55.5 35 71.4
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 2.5e-06 55.5 35 71.4
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 2.5e-06 55.5 35 71.4
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 2.5e-06 55.5 35 71.4
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.5e-06 55.5 35 71.4
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 2.5e-06 55.5 35 71.4
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 2.5e-06 55.5 35 71.4
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 2.5e-06 55.5 35 74.3
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 2.5e-06 55.5 35 74.3
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.5e-06 55.5 88 40.9
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 3.2e-06 55.1 35 71.4
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.2e-06 55.1 35 68.6
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.2e-06 55.1 35 71.4
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.2e-06 55.1 35 68.6
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.2e-06 55.1 35 71.4
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.2e-06 55.1 72 44.4
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 3.2e-06 55.1 35 71.4
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 3.2e-06 55.1 35 68.6
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 4.2e-06 54.7 35 71.4
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.2e-06 54.7 35 65.7
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 4.2e-06 54.7 35 71.4
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 4.2e-06 54.7 103 37.9
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 5.5e-06 54.3 35 71.4
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 5.5e-06 54.3 35 71.4
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 5.5e-06 54.3 35 71.4
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 5.5e-06 54.3 35 71.4
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 5.5e-06 54.3 35 71.4
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 5.5e-06 54.3 35 71.4
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 5.5e-06 54.3 34 73.5
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 5.5e-06 54.3 34 73.5
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 5.5e-06 54.3 90 51.1
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 7.2e-06 53.9 35 68.6
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 7.2e-06 53.9 35 68.6
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 7.2e-06 53.9 35 68.6
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 7.2e-06 53.9 35 68.6
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 7.2e-06 53.9 35 68.6
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 7.2e-06 53.9 35 68.6
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 7.2e-06 53.9 35 68.6
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 9.4e-06 53.5 99 46.5
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 9.4e-06 53.5 35 68.6


User provided reference genes

Program Settings