Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 2.6e-153 545.4 287 100.0
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 4.0e-130 468.4 353 74.2
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 6.8e-122 441.0 284 84.9
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 2.9e-104 382.5 354 63.8
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 1.5e-100 370.2 288 68.8
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 1.6e-99 366.7 287 70.4
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 2.1e-99 366.3 289 68.9
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 1.8e-98 363.2 289 68.9
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 5.3e-98 361.7 287 68.3
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 3.8e-96 355.5 288 68.8
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 6.4e-96 354.8 287 67.9
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 1.1e-95 354.0 283 68.9
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 2.4e-95 352.8 287 67.2
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 5.4e-95 351.7 287 67.2
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 7.1e-95 351.3 287 66.9
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 2.1e-94 349.7 291 66.7
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 1.7e-93 346.7 289 66.8
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.1e-92 344.0 293 66.6
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 2.5e-92 342.8 288 65.6
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 5.6e-92 341.7 288 66.7
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.3e-91 340.5 292 63.0
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.8e-91 339.3 297 65.0
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 3.6e-91 339.0 291 63.2
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 3.6e-91 339.0 291 63.2
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 4.8e-91 338.6 288 64.6
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.4e-90 336.3 307 60.9
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 2.4e-90 336.3 292 63.7
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 5.3e-90 335.1 295 64.7
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 1.2e-89 334.0 288 63.2
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.5e-89 333.6 296 63.2
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 2.0e-89 333.2 287 64.5
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 1.3e-88 330.5 295 64.1
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 1.1e-87 327.4 287 63.1
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 2.4e-87 326.2 289 63.3
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.2e-86 323.9 322 57.5
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 3.5e-86 322.4 283 62.2
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 6.7e-85 318.2 292 61.0
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 1.1e-84 317.4 288 61.8
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 2.5e-84 316.2 288 60.8
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 4.3e-84 315.5 288 60.4
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 7.4e-84 314.7 288 60.8
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 9.6e-84 314.3 294 58.8
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 9.6e-84 314.3 297 59.6
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 1.3e-83 313.9 292 60.3
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 1.1e-82 310.8 290 60.3
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 1.4e-82 310.5 289 61.6
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 1.4e-82 310.5 289 59.2
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 4.0e-82 308.9 293 60.4
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 4.0e-82 308.9 292 58.6
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 6.9e-82 308.1 290 57.9
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 9.0e-82 307.8 287 62.0
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 2.6e-81 306.2 287 59.9
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 2.6e-81 306.2 293 60.8
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 2.6e-81 306.2 292 58.2
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 4.5e-81 305.4 303 59.4
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 4.5e-81 305.4 287 59.2
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 5.8e-81 305.1 287 58.5
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 5.8e-81 305.1 287 60.6
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 5.8e-81 305.1 332 54.2
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 1.3e-80 303.9 290 59.3
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 4.2e-79 298.9 292 57.5
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 5.5e-79 298.5 288 59.0
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 7.1e-79 298.1 285 58.9
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 7.1e-79 298.1 288 58.7
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 1.2e-78 297.4 287 59.6
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 1.6e-78 297.0 286 57.7
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 1.0e-77 294.3 283 58.7
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 2.3e-77 293.1 285 57.5
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 2.3e-77 293.1 292 57.2
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 6.7e-77 291.6 292 58.2
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 1.1e-76 290.8 290 58.3
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 1.1e-76 290.8 285 58.6
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 1.1e-76 290.8 292 58.2
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 1.5e-76 290.4 285 56.8
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 2.5e-76 289.7 294 58.2
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 2.1e-75 286.6 295 57.3
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 2.8e-75 286.2 285 56.8
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 2.8e-75 286.2 287 58.2
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 5.3e-74 282.0 288 55.6
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 2.0e-73 280.0 296 55.1
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 2.0e-73 280.0 243 63.4
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 1.1e-71 274.2 286 54.2
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 1.1e-71 274.2 293 57.0
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 3.2e-71 272.7 299 53.2
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 9.3e-71 271.2 293 56.0
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 1.2e-70 270.8 287 53.7
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 1.2e-70 270.8 283 55.8
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 2.1e-70 270.0 291 55.3
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 3.5e-70 269.2 291 56.0
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 7.9e-70 268.1 287 54.7
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 1.3e-69 267.3 283 55.5
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 1.8e-69 266.9 288 53.5
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 1.8e-69 266.9 286 58.0
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 8.7e-69 264.6 286 55.2
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 1.1e-68 264.2 287 55.4
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 4.3e-68 262.3 293 55.6
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 4.3e-68 262.3 286 53.5
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 4.3e-68 262.3 286 53.5
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 2.8e-67 259.6 287 54.4
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 1.1e-66 257.7 291 53.6
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 4.1e-66 255.8 299 51.2
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 3.4e-65 252.7 287 51.2
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 1.0e-64 251.1 252 55.2
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.3e-64 250.8 283 52.7
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 5.0e-64 248.8 287 53.3
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 5.5e-63 245.4 284 51.1
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 5.5e-63 245.4 284 51.1
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 5.5e-63 245.4 284 51.1
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 4.6e-62 242.3 483 38.1
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 3.0e-61 239.6 284 51.4
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 3.9e-61 239.2 284 51.1
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 3.9e-61 239.2 288 48.3
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 1.7e-59 233.8 290 50.0
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 6.3e-59 231.9 196 66.3
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 1.8e-58 230.3 514 35.8
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.5e-57 227.3 176 68.8
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 2.0e-57 226.9 290 49.0
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 2.0e-57 226.9 283 50.9
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 6.7e-53 211.8 304 45.4
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 4.8e-51 205.7 282 48.2
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 1.8e-50 203.8 171 66.1
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 7.7e-49 198.4 289 47.1
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 2.6e-44 183.3 236 49.2
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 8.2e-43 178.3 289 44.3
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 1.7e-40 170.6 147 64.6
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 8.5e-40 168.3 175 52.0
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 4.2e-39 166.0 147 63.3
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 2.7e-38 163.3 144 65.3
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 8.0e-38 161.8 176 51.7
Atru.chr1.279 Acer truncatum HOM05D004891 ORTHO05D005997 4.4e-36 156.0 132 69.7
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 6.3e-35 152.1 175 51.4
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 2.4e-34 150.2 277 40.1
AL8G27980 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 1.0e-32 144.8 147 53.1
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 8.5e-32 141.7 297 37.4
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 9.4e-31 138.3 287 36.6
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 9.8e-28 128.3 294 35.4
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 1.8e-26 124.0 175 47.4
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 3.1e-26 123.2 108 65.7
CDE02G0860 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 1.2e-25 121.3 287 33.8
TAR629G2914 Trochodendron aralioides HOM05D004891 ORTHO05D005997 2.9e-24 116.7 278 36.7
MSTRG.62 Avicennia marina HOM05D004891 ORTHO05D005997 3.3e-23 113.2 116 56.0
Oeu036884.1 Olea europaea HOM05D004891 ORTHO05D005997 1.0e-21 108.2 109 56.9
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 4.9e-19 99.4 300 30.0
Sabra10G0105200 Salix brachista HOM05D004891 ORTHO05D005997 4.9e-19 99.4 84 70.2
Sabra15G0071500 Salix brachista HOM05D004891 ORTHO05D005997 4.9e-19 99.4 84 70.2
Sabra12G0063200 Salix brachista HOM05D004891 ORTHO05D005997 7.8e-17 92.0 121 52.9
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 9.5e-15 85.1 160 38.1
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.6e-14 84.3 160 36.9
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 2.6e-12 77.0 165 35.2
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.4e-12 76.3 160 35.0
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 7.5e-12 75.5 126 36.5
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 4.9e-11 72.8 161 35.4
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.4e-10 70.5 162 34.6
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 5.4e-10 69.3 160 35.0
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.6e-09 67.8 163 35.6
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 3.5e-09 66.6 71 47.9
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.0e-08 65.1 165 34.5
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 1.3e-08 64.7 265 25.3
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.0e-08 63.5 92 38.0
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 5.0e-08 62.8 170 32.4
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 5.0e-08 62.8 209 30.1
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 5.0e-08 62.8 199 28.1
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 3.3e-07 60.1 162 32.7
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 4.3e-07 59.7 289 27.7
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 4.3e-07 59.7 168 28.0
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 7.3e-07 58.9 115 34.8
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 9.5e-07 58.5 82 41.5
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 9.5e-07 58.5 160 30.6
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 2.1e-06 57.4 271 27.3
Zm00001eb192840 Zea mays HOM05D004891 ORTHO05D005997 2.8e-06 57.0 119 34.5
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 4.7e-06 56.2 83 39.8
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 6.2e-06 55.8 84 39.3
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 6.2e-06 55.8 71 45.1
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 8.0e-06 55.5 71 43.7
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 8.0e-06 55.5 85 37.6


User provided reference genes

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