Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 0.0e+00 1538.5 815 100.0
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 0.0e+00 1355.9 895 83.4
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 0.0e+00 1273.5 821 84.8
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 0.0e+00 1204.5 824 80.9
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 3.2e-310 1068.1 821 72.4
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 8.9e-284 980.3 840 66.0
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 1.8e-281 972.6 874 63.2
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 7.0e-281 970.7 876 63.2
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 9.2e-281 970.3 864 64.2
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 9.2e-281 970.3 783 68.7
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 2.8e-277 958.7 905 60.3
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.1e-273 946.8 868 62.7
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 1.1e-273 946.8 851 63.7
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 3.5e-272 941.8 851 63.9
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 6.6e-271 937.6 864 62.8
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 1.8e-268 929.5 891 60.9
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 2.3e-268 929.1 864 62.8
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 4.9e-266 921.4 859 61.5
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 5.4e-257 891.3 881 58.7
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.0e-255 887.1 878 58.2
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 6.6e-255 884.4 866 59.7
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 1.9e-254 882.9 910 58.0
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 2.2e-250 869.4 858 59.7
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.4e-249 866.7 841 60.2
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.9e-249 866.3 760 63.2
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 2.4e-249 865.9 854 59.3
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 5.4e-249 864.8 882 58.3
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 9.2e-249 864.0 885 57.2
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 5.1e-247 858.2 887 57.2
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 1.4e-244 850.1 841 58.5
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 3.1e-244 849.0 864 59.3
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.2e-243 847.0 879 56.9
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.0e-243 846.3 866 58.5
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 5.8e-243 844.7 763 62.8
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 5.8e-243 844.7 843 58.6
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 9.9e-243 844.0 830 58.9
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.9e-242 841.6 871 57.3
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 8.4e-242 840.9 833 58.1
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 8.4e-242 840.9 856 57.1
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 1.4e-241 840.1 833 58.0
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.4e-241 840.1 879 56.8
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.9e-241 839.7 861 56.9
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.2e-241 838.6 866 58.4
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 5.4e-241 838.2 843 59.0
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.5e-240 835.5 843 58.0
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 4.6e-240 835.1 861 56.9
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 5.1e-239 831.6 860 57.6
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 7.3e-238 827.8 875 55.5
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.3e-237 827.0 874 55.9
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 2.1e-237 826.2 877 56.9
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.4e-236 823.5 867 57.7
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 1.8e-236 823.2 874 56.6
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.2e-233 812.4 843 57.5
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 7.1e-233 811.2 763 60.7
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 3.0e-231 805.8 849 56.3
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 6.2e-229 798.1 827 56.8
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 6.2e-229 798.1 834 57.3
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.4e-228 797.0 829 56.9
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 3.8e-226 788.9 884 54.2
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 6.4e-226 788.1 825 55.9
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.9e-225 786.6 763 59.0
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 3.2e-225 785.8 751 61.1
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 7.1e-225 784.6 871 54.1
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 5.1e-223 778.5 862 55.3
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.5e-222 776.9 864 55.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.5e-222 776.2 864 55.1
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.6e-221 773.5 864 55.2
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.2e-221 771.2 861 55.2
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.4e-220 770.4 877 53.9
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 8.4e-218 761.1 896 51.2
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.2e-216 757.3 841 53.6
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 3.3e-214 749.2 832 55.0
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 3.3e-214 749.2 825 54.2
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 4.3e-214 748.8 860 53.3
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 2.8e-213 746.1 902 51.8
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 2.5e-209 733.0 871 51.3
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 2.3e-207 726.5 857 54.1
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 8.8e-207 724.5 835 52.7
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.7e-205 719.2 861 52.8
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 8.2e-205 718.0 655 62.1
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 5.9e-203 711.8 854 52.6
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 3.8e-202 709.1 853 50.6
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 1.6e-200 703.7 790 53.3
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 2.1e-200 703.4 820 53.2
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.0e-199 701.0 844 50.8
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 6.7e-199 698.4 858 51.5
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 9.7e-198 694.5 916 49.8
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 4.1e-196 689.1 664 60.1
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 5.0e-194 682.2 859 50.9
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 9.4e-193 677.9 854 50.5
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.2e-192 677.6 855 51.3
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 1.8e-191 673.7 851 50.3
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 1.8e-191 673.7 877 50.3
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 4.4e-190 669.1 782 52.8
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 2.8e-189 666.4 790 51.4
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 3.1e-188 662.9 820 50.6
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 7.7e-187 658.3 798 51.8
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 7.7e-187 658.3 872 49.5
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 6.1e-184 648.7 838 50.7
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 9.1e-180 634.8 853 49.4
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 8.5e-178 628.2 820 49.0
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 1.9e-177 627.1 725 52.1
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 4.4e-174 615.9 800 48.5
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 9.1e-172 608.2 827 48.0
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 2.1e-168 597.0 686 54.1
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.4e-167 594.3 718 50.1
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 2.0e-166 590.5 629 55.3
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 1.5e-161 574.3 835 46.5
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 2.5e-161 573.5 794 47.6
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 5.6e-161 572.4 791 47.5
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 3.4e-158 563.1 764 47.4
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 3.3e-153 546.6 856 42.9
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.7e-149 534.3 863 43.7
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.7e-149 534.3 837 44.9
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 4.9e-149 532.7 746 48.1
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 6.4e-149 532.3 803 45.6
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 7.1e-148 528.9 747 48.3
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 2.5e-145 520.4 750 46.9
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.5e-145 520.4 750 46.5
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 9.5e-145 518.5 747 47.1
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 8.1e-144 515.4 828 42.4
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 4.1e-140 503.1 783 44.1
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 8.6e-138 495.4 842 42.0
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.9e-137 494.2 747 46.1
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.5e-134 484.6 785 42.2
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 4.9e-125 453.0 742 44.5
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 7.1e-124 449.1 744 44.2
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 3.0e-122 443.7 408 61.5
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 4.8e-120 436.4 730 43.3
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 6.2e-120 436.0 748 42.8
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.8e-119 434.5 749 41.9
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 5.8e-118 429.5 744 43.4
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 1.3e-117 428.3 742 43.3
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.9e-113 414.5 469 53.7
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 6.5e-109 399.4 742 41.6
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 2.1e-107 394.4 311 68.2
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 2.1e-107 394.4 311 68.2
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 2.5e-89 334.3 374 54.3
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 1.0e-77 295.8 659 35.8
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.9e-76 291.6 950 28.7
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 1.7e-72 278.5 415 43.4
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 5.9e-70 270.0 747 33.6
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 7.7e-70 269.6 778 32.8
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 6.5e-69 266.5 740 32.8
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 3.2e-68 264.2 812 32.3
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.5e-65 255.4 287 55.1
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 5.9e-54 216.9 351 41.3
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.8e-51 208.0 690 29.1
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 3.1e-42 177.9 153 64.1
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 1.1e-39 169.5 143 64.3
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 1.7e-37 162.2 214 48.1
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 5.0e-37 160.6 163 58.3
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 2.5e-36 158.3 163 57.7
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 9.8e-33 146.4 78 97.4
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 4.6e-30 137.5 173 49.1
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 2.4e-23 115.2 119 57.1
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 3.2e-23 114.8 170 46.5
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 7.1e-23 113.6 121 52.9
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 1.2e-22 112.8 121 52.9
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 1.3e-21 109.4 98 64.3
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 1.7e-21 109.0 184 39.7
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 9.6e-20 103.2 129 52.7
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 1.4e-18 99.4 159 40.9
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 8.4e-16 90.1 87 60.9
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 3.2e-15 88.2 87 59.8
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 3.5e-14 84.7 96 57.3
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 4.6e-14 84.3 199 36.2
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 5.1e-13 80.9 209 32.5
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 3.6e-11 74.7 213 31.9
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 8.1e-11 73.6 153 39.2
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 5.3e-10 70.9 474 27.2
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 5.8e-09 67.4 406 27.8
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 2.9e-08 65.1 34 85.3
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.1e-07 63.2 45 68.9
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 3.2e-07 61.6 191 31.4
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 3.2e-07 61.6 189 34.9
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 7.1e-07 60.5 72 51.4
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 4.6e-06 57.8 63 54.0


User provided reference genes

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