Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 0.0e+00 1825.1 895 100.0
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 0.0e+00 1717.6 895 95.0
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 0.0e+00 1714.1 895 95.0
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 2.3e-309 1065.4 919 59.8
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 2.0e-305 1052.4 927 58.4
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 1.8e-301 1039.3 905 59.4
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 2.6e-297 1025.4 931 58.5
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.2e-294 1016.5 922 56.4
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 1.7e-291 1006.1 920 58.0
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 5.9e-289 997.7 925 57.0
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.1e-286 989.2 925 56.6
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 2.1e-278 962.6 873 57.7
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 1.8e-277 959.5 900 56.9
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 1.8e-274 949.5 896 55.0
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 5.3e-274 948.0 1117 47.9
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 4.5e-273 944.9 898 57.3
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 1.1e-271 940.3 901 54.3
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 3.2e-271 938.7 896 54.6
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 2.9e-264 915.6 905 53.6
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.5e-263 913.3 901 53.5
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.9e-263 912.9 905 53.8
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 3.6e-262 908.7 901 53.1
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 3.4e-260 902.1 868 56.9
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 2.9e-256 889.0 1114 45.1
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 5.0e-256 888.3 1116 46.0
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 1.1e-255 887.1 921 50.7
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 3.7e-251 872.1 829 55.1
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 2.3e-245 852.8 1124 43.8
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 5.1e-240 835.1 905 48.0
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 8.6e-240 834.3 911 47.9
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 3.3e-239 832.4 892 49.8
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 8.1e-238 827.8 921 47.8
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 2.3e-237 826.2 895 49.1
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 8.9e-237 824.3 898 47.8
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 1.5e-236 823.5 913 47.8
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 4.4e-236 822.0 913 47.6
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 1.9e-234 816.6 909 48.4
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 5.4e-234 815.1 916 47.2
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 2.7e-233 812.8 910 47.8
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 2.7e-233 812.8 932 48.0
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 6.0e-233 811.6 898 49.2
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 1.0e-232 810.8 910 47.8
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 1.7e-232 810.1 896 49.8
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 6.6e-232 808.1 919 48.3
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 8.6e-232 807.7 905 47.7
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 1.2e-230 803.9 910 48.7
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 1.6e-230 803.5 909 47.6
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 6.2e-230 801.6 913 47.5
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 6.2e-230 801.6 910 50.1
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 2.4e-229 799.7 1096 42.1
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 3.1e-229 799.3 896 47.1
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 5.2e-229 798.5 901 49.2
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 2.0e-228 796.6 892 49.0
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 2.0e-228 796.6 900 47.3
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 5.8e-228 795.0 899 48.8
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 7.6e-228 794.7 896 47.5
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 1.1e-226 790.8 899 48.6
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 5.4e-226 788.5 900 47.4
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 1.7e-224 783.5 1100 41.3
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 9.0e-221 771.2 903 45.8
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 6.4e-219 765.0 886 47.5
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 1.1e-218 764.2 915 45.4
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 8.1e-214 748.0 924 47.1
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 6.4e-211 738.4 646 59.0
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 8.4e-211 738.0 916 44.9
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 1.1e-210 737.6 917 45.1
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 2.4e-210 736.5 651 58.4
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.9e-208 729.2 906 46.6
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 4.3e-207 725.7 1087 39.7
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.6e-206 723.8 906 45.9
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 1.4e-205 720.7 897 46.2
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 1.2e-201 707.6 1063 41.3
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.9e-200 702.6 904 44.7
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 4.8e-198 695.7 898 43.9
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 3.8e-195 686.0 898 44.5
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 3.2e-194 682.9 910 43.7
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 1.2e-193 681.0 923 44.1
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 1.6e-193 680.6 859 44.9
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 1.6e-190 670.6 804 46.5
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 1.0e-184 651.4 1072 37.5
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 2.3e-184 650.2 797 46.0
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.4e-180 636.3 854 43.4
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 2.2e-179 633.6 1033 39.4
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.2e-179 633.6 871 43.3
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 7.2e-178 628.6 803 44.7
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 3.9e-176 622.9 879 41.8
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 2.0e-175 620.5 973 38.3
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 9.7e-175 618.2 1127 35.7
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 4.2e-170 602.8 773 45.0
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.6e-169 600.9 722 48.1
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 1.0e-163 581.6 952 37.5
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 1.0e-163 581.6 711 46.4
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 5.4e-157 559.3 490 57.8
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 9.1e-157 558.5 526 54.2
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 8.9e-144 515.4 560 48.2
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 1.5e-135 488.0 599 46.2
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 9.2e-133 478.8 901 34.5
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 5.0e-131 473.0 609 43.7
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 7.3e-130 469.2 957 32.1
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 5.2e-128 463.0 962 33.5
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 2.4e-125 454.1 522 48.9
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 2.8e-121 440.7 956 32.7
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 2.0e-119 434.5 725 37.8
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 6.4e-118 429.5 562 45.7
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 7.3e-114 416.0 592 40.0
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 6.6e-107 392.9 1206 27.5
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 3.1e-96 357.5 805 31.8
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 7.6e-95 352.8 379 49.6
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 1.8e-91 341.7 367 50.4
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 2.8e-89 334.3 475 41.1
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 3.4e-87 327.4 676 35.1
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 1.1e-80 305.8 365 44.7
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 7.4e-74 283.1 941 28.4
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 1.6e-73 282.0 365 44.7
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 2.7e-68 264.6 307 49.8
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 7.9e-68 263.1 213 62.0
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 1.4e-67 262.3 300 46.7
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 1.1e-64 252.7 247 53.4
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 1.1e-64 252.7 233 59.7
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 2.7e-60 238.0 158 67.7
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 2.6e-58 231.5 207 58.5
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 1.1e-56 226.1 205 53.2
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.6e-55 221.5 648 27.9
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 8.0e-52 209.9 204 53.4
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 7.0e-48 196.8 262 44.3
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 1.2e-39 169.5 335 34.0
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 9.4e-37 159.8 109 67.0
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 1.0e-35 156.4 866 23.1
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 8.6e-30 136.7 122 58.2
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 8.9e-27 126.7 84 64.3
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 1.3e-22 112.8 176 41.5
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 5.6e-21 107.5 204 30.4
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 5.2e-19 100.9 87 57.5
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 1.1e-16 93.2 166 37.3
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 2.0e-10 72.4 154 31.2
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 1.9e-08 65.9 106 37.7
SHI24230 Sapria himalayana HOM05D005399 ORTHO05D006347 2.3e-06 58.9 42 64.3
SHI24232 Sapria himalayana HOM05D005399 ORTHO05D006347 3.0e-06 58.5 31 74.2


User provided reference genes

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