Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G020400 Populus trichocarpa HOM05D007736 ORTHO05D009783 6.4e-224 780.4 386 100.0
Sabra12G0012700 Salix brachista HOM05D007736 ORTHO05D009783 2.3e-173 612.5 378 82.3
Potri.015G008200 Populus trichocarpa HOM05D007736 ORTHO05D009783 1.4e-151 540.0 409 72.1
Sabra15G0006300 Salix brachista HOM05D007736 ORTHO05D009783 1.7e-144 516.5 410 69.0
Manes.04G057900 Manihot esculenta HOM05D007736 ORTHO05D009783 9.6e-63 245.0 369 43.1
CiPaw.05G040000 Carya illinoinensis HOM05D007736 ORTHO05D009783 7.6e-60 235.3 371 42.0
Cfa021836 Carpinus fangiana HOM05D007736 ORTHO05D009783 3.2e-58 229.9 373 41.3
TWI14G1332 Tripterygium wilfordii HOM05D007736 ORTHO05D009783 3.2e-58 229.9 434 37.8
Haze_10792 Corylus avellana HOM05D007736 ORTHO05D009783 7.1e-58 228.8 382 41.1
Dinv19331 Davidia involucrata HOM05D007736 ORTHO05D009783 2.1e-57 227.3 430 37.9
MELO3C028798.2 Cucumis melo HOM05D007736 ORTHO05D009783 3.7e-54 216.5 440 35.9
ClCG09G014560 Citrullus lanatus HOM05D007736 ORTHO05D009783 8.2e-54 215.3 433 35.6
COL.COLO4_20877 Corchorus olitorius HOM05D007736 ORTHO05D009783 8.2e-54 215.3 393 37.7
TAR625G1059 Trochodendron aralioides HOM05D007736 ORTHO05D009783 8.2e-54 215.3 462 34.8
QL11p018598 Quercus lobata HOM05D007736 ORTHO05D009783 1.4e-53 214.5 365 40.8
Eucgr.I02697 Eucalyptus grandis HOM05D007736 ORTHO05D009783 6.9e-53 212.2 261 46.4
Thecc.02G144400 Theobroma cacao HOM05D007736 ORTHO05D009783 3.4e-52 209.9 388 36.6
CsaV3_7G022310 Cucumis sativus L. HOM05D007736 ORTHO05D009783 7.7e-52 208.8 434 35.9
arahy.Tifrunner.gnm1.ann1.40XV2D Arachis hypogaea HOM05D007736 ORTHO05D009783 1.3e-51 208.0 385 37.4
Phvul.006G209200 Phaseolus vulgaris HOM05D007736 ORTHO05D009783 2.2e-51 207.2 416 36.5
Glyma.15G050700 Glycine max HOM05D007736 ORTHO05D009783 1.9e-50 204.1 381 37.0
arahy.Tifrunner.gnm1.ann1.JZ71MD Arachis hypogaea HOM05D007736 ORTHO05D009783 1.2e-49 201.4 391 36.6
Sed0025125 Sechium edule HOM05D007736 ORTHO05D009783 1.4e-48 198.0 349 37.8
Cpa.g.sc2.48 Carica papaya HOM05D007736 ORTHO05D009783 1.8e-48 197.6 395 36.2
VMungo0540G1970 Vigna mungo HOM05D007736 ORTHO05D009783 5.7e-47 192.6 401 35.4
Cc02_g21990 Coffea canephora HOM05D007736 ORTHO05D009783 9.7e-47 191.8 247 46.6
Sed0013332 Sechium edule HOM05D007736 ORTHO05D009783 9.7e-47 191.8 246 47.2
Ca_00110_v3 Cicer arietinum L. HOM05D007736 ORTHO05D009783 2.2e-46 190.7 402 36.6
Dinv24237 Davidia involucrata HOM05D007736 ORTHO05D009783 2.4e-45 187.2 272 43.0
Lj6g0003665 Lotus japonicus HOM05D007736 ORTHO05D009783 2.4e-45 187.2 422 33.6
Medtr2g008130 Medicago truncatula HOM05D007736 ORTHO05D009783 2.0e-44 184.1 387 37.0
Actinidia38961 Actinidia chinensis HOM05D007736 ORTHO05D009783 2.6e-44 183.7 410 33.9
Glyma.08G181600 Glycine max HOM05D007736 ORTHO05D009783 2.6e-44 183.7 387 35.4
Rhsim11G0133400 Rhododendron simsii HOM05D007736 ORTHO05D009783 1.7e-43 181.0 286 40.2
Atru.chr6.1122 Acer truncatum HOM05D007736 ORTHO05D009783 2.9e-43 180.3 346 36.7
Psat1g218640 Pisum sativum HOM05D007736 ORTHO05D009783 2.9e-43 180.3 385 35.1
Lj5P244T47 Lonicera japonica HOM05D007736 ORTHO05D009783 5.0e-43 179.5 392 34.7
vmacro01801 Vaccinium macrocarpon HOM05D007736 ORTHO05D009783 2.5e-42 177.2 436 33.3
DCAR_021830 Daucus carota HOM05D007736 ORTHO05D009783 5.1e-40 169.5 374 34.5
PGR142G3153 Punica granatum HOM05D007736 ORTHO05D009783 1.5e-39 167.9 383 35.0
Sc16g0009620 Simmondsia chinensis HOM05D007736 ORTHO05D009783 2.2e-38 164.1 375 31.2
Ciclev10028677m.g Citrus clementina HOM05D007736 ORTHO05D009783 1.8e-37 161.0 356 34.8
Lalb_Chr20g0123201 Lupinus albus HOM05D007736 ORTHO05D009783 9.1e-37 158.7 424 31.1
EL10Ac4g09677 Beta vulgaris HOM05D007736 ORTHO05D009783 8.5e-35 152.1 258 38.4
AUR62006887 Chenopodium quinoa HOM05D007736 ORTHO05D009783 8.5e-35 152.1 320 36.9
Hund21796 Selenicereus undatus HOM05D007736 ORTHO05D009783 2.5e-34 150.6 347 32.9
PGSC0003DMG400029771 Solanum tuberosum HOM05D007736 ORTHO05D009783 3.2e-34 150.2 236 39.8
CAN.G523.104 Capsicum annuum HOM05D007736 ORTHO05D009783 4.2e-34 149.8 246 39.0
Lsat_1_v5_gn_5_106541 Lactuca sativa HOM05D007736 ORTHO05D009783 5.5e-34 149.4 228 40.4
AUR62000538 Chenopodium quinoa HOM05D007736 ORTHO05D009783 7.2e-34 149.1 252 40.1
Sopen01g047310 Solanum pennellii HOM05D007736 ORTHO05D009783 7.2e-34 149.1 234 40.6
Solyc01g104790.4 Solanum lycopersicum HOM05D007736 ORTHO05D009783 1.2e-33 148.3 234 40.2
Nitab4.5_0000249g0440 Nicotiana tabacum HOM05D007736 ORTHO05D009783 1.6e-33 147.9 248 39.1
HanXRQChr16g0514111 Helianthus annuus HOM05D007736 ORTHO05D009783 8.0e-33 145.6 226 41.2
TPR.G19753 Trifolium pratense HOM05D007736 ORTHO05D009783 1.0e-32 145.2 375 34.7
Nitab4.5_0014357g0010 Nicotiana tabacum HOM05D007736 ORTHO05D009783 1.3e-30 138.3 270 36.3
MSTRG.5252 Avicennia marina HOM05D007736 ORTHO05D009783 1.8e-29 134.4 260 36.2
Ah.06g188730 Amaranthus hybridus HOM05D007736 ORTHO05D009783 4.5e-28 129.8 274 36.5
MSTRG.27826 Avicennia marina HOM05D007736 ORTHO05D009783 1.3e-27 128.3 267 33.3
Migut.N01016 Erythranthe guttata HOM05D007736 ORTHO05D009783 8.5e-27 125.6 250 34.4
FAN09G0667 Fragaria x ananassa HOM05D007736 ORTHO05D009783 8.5e-27 125.6 147 48.3
ECA234G2384 Erigeron canadensis HOM05D007736 ORTHO05D009783 1.5e-26 124.8 234 35.5
FAN02G1431 Fragaria x ananassa HOM05D007736 ORTHO05D009783 5.5e-26 122.9 147 46.9
FAN14G5928 Fragaria x ananassa HOM05D007736 ORTHO05D009783 9.4e-26 122.1 133 50.4
FAN05G0537 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.2e-25 121.7 135 49.6
FvH4_6g01062 Fragaria vesca HOM05D000868 ORTHO05D000711 1.6e-25 121.3 133 50.4
RcHm_v2.0_Chr3g0448601 Rosa chinensis HOM05D007736 ORTHO05D009783 1.6e-25 121.3 198 40.4
MD04G1236600 Malus domestica HOM05D007736 ORTHO05D009783 2.7e-25 120.6 138 44.9
MD12G1255900 Malus domestica HOM05D007736 ORTHO05D009783 8.0e-25 119.0 145 44.8
Prupe.6G356600 Prunus persica HOM05D007736 ORTHO05D009783 1.0e-24 118.6 153 46.4
FAN05G0165 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.4e-24 118.2 135 48.9
Prupe.7G056800 Prunus persica HOM05D007736 ORTHO05D009783 1.4e-24 118.2 147 42.9
Actinidia00233 Actinidia chinensis HOM05D007736 ORTHO05D009783 8.8e-24 115.5 356 30.6
HanXRQChr10g0289121 Helianthus annuus HOM05D007736 ORTHO05D009783 9.1e-21 105.5 244 31.6
unitig_26.g9583 Utricularia gibba HOM05D007736 ORTHO05D009783 3.8e-19 100.1 127 40.2
Aqoxy4G00650 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 2.5e-18 97.4 400 28.5
Aqoxy5G02135 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 2.5e-18 97.4 400 28.5
CDE02G1981 Ceratophyllum demersum HOM05D007736 ORTHO05D009783 7.2e-18 95.9 246 31.3
TAR381G1413 Trochodendron aralioides HOM05D007736 ORTHO05D009783 2.7e-17 94.0 83 51.8
SGA_v2.0_scaffold45G17286 Striga asiatica HOM05D007736 ORTHO05D009783 1.0e-16 92.0 365 28.8
Nn1g06123 Nelumbo nucifera HOM05D007736 ORTHO05D009783 8.8e-16 89.0 375 26.9
ATR0772G143 Amborella trichopoda HOM05D007736 ORTHO05D009783 2.4e-13 80.9 408 25.0
Zm00001eb382360 Zea mays HOM05D007736 ORTHO05D009783 3.1e-13 80.5 218 32.1
Os06g0468400 Oryza sativa ssp. japonica HOM05D007736 ORTHO05D009783 4.1e-13 80.1 222 30.6
Oeu012723.3 Olea europaea HOM05D007736 ORTHO05D009783 7.7e-12 75.9 174 31.0
Peaxi162Scf01290g00019 Petunia axillaris HOM05D007736 ORTHO05D009783 3.8e-11 73.6 191 30.9
TAR381G0297 Trochodendron aralioides HOM05D007736 ORTHO05D009783 3.4e-07 60.5 229 26.6


User provided reference genes

Program Settings