Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 0.0e+00 1927.9 1144 100.0
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 0.0e+00 1573.5 1194 80.7
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 0.0e+00 1466.1 1161 79.6
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 0.0e+00 1321.6 1153 70.5
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 1.2e-254 884.0 996 60.6
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 1.2e-233 814.3 1214 51.2
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.6e-233 813.1 1241 50.8
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 7.6e-233 811.6 1182 47.4
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 1.3e-229 800.8 1222 50.4
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 8.7e-229 798.1 1243 52.3
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 7.4e-228 795.0 1207 53.2
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.0e-225 786.9 1219 49.1
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 1.0e-224 784.6 1206 49.8
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 5.0e-224 782.3 1217 51.4
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 3.0e-221 773.1 1233 49.1
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 5.7e-220 768.8 1179 51.6
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 9.7e-220 768.1 1224 49.8
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 2.4e-218 763.5 1270 51.1
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 9.1e-210 734.9 1305 47.4
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.3e-208 731.1 1210 50.7
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.0e-205 721.5 1235 48.7
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 6.7e-205 718.8 1202 50.5
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 4.4e-204 716.1 820 53.0
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 1.4e-202 711.1 1252 48.1
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.0e-200 704.9 1044 46.5
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 5.5e-199 699.1 1228 50.2
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 6.1e-198 695.7 1211 50.3
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.4e-194 684.5 1212 50.1
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 4.7e-190 669.5 1247 46.8
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 6.1e-190 669.1 1239 47.5
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 3.4e-188 663.3 1241 47.2
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.9e-184 650.2 1239 47.0
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 8.6e-184 648.7 1253 45.7
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.5e-183 647.1 1239 47.0
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 3.3e-183 646.7 827 48.1
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 1.5e-180 637.9 1236 45.2
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 3.5e-177 626.7 1215 45.5
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 3.5e-177 626.7 1230 42.7
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.6e-174 617.8 1236 44.6
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 8.3e-171 605.5 1189 43.7
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.6e-169 601.3 1236 44.7
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.1e-165 587.0 1254 42.9
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.9e-165 585.5 1235 45.5
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 1.2e-164 585.1 1187 42.5
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 2.6e-164 583.9 1190 44.1
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 1.3e-160 571.6 1208 42.1
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 3.9e-160 570.1 819 45.1
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 2.5e-159 567.4 1295 41.7
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.8e-157 561.2 1220 38.3
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 4.9e-155 553.1 1174 44.6
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 3.5e-153 547.0 1186 43.8
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.2e-148 531.9 1106 44.3
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 2.0e-148 531.2 1292 37.6
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 2.3e-144 517.7 1204 41.1
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 4.9e-139 500.0 1140 39.8
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.4e-138 498.4 1114 40.8
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 3.5e-137 493.8 1077 43.3
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 1.5e-135 488.4 1262 36.8
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 2.5e-135 487.6 839 40.6
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 1.6e-134 485.0 1137 40.3
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 5.3e-133 479.9 802 39.7
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 4.5e-132 476.9 627 47.2
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 8.4e-131 472.6 1221 36.7
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 2.4e-130 471.1 1274 35.6
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 2.4e-130 471.1 1219 38.6
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 3.2e-130 470.7 1070 42.0
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 1.5e-127 461.8 1261 35.6
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 3.3e-127 460.7 1337 36.6
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.6e-126 458.4 1213 37.6
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 2.6e-124 451.1 1248 34.7
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 1.9e-122 444.9 1262 36.8
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 4.6e-121 440.3 1313 34.5
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 8.7e-120 436.0 1113 35.1
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 7.4e-119 433.0 1279 36.9
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 1.3e-118 432.2 815 37.9
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 1.3e-118 432.2 808 38.4
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.0e-116 424.9 731 39.8
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 5.0e-115 420.2 1203 39.6
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.1e-114 419.1 1232 37.8
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.4e-114 418.7 1275 35.5
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.4e-114 418.7 716 39.2
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 1.5e-111 408.7 830 38.3
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 4.8e-110 403.7 1207 33.9
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 3.4e-108 397.5 821 37.8
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 3.2e-106 391.0 1055 41.8
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 9.4e-106 389.4 973 39.6
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 2.7e-105 387.9 1237 36.9
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 7.9e-105 386.3 804 36.6
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 5.1e-104 383.6 1023 42.3
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.1e-103 382.5 1256 35.7
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.0e-103 381.7 1212 33.5
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 5.7e-103 380.2 655 39.5
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.8e-102 377.1 774 36.7
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 1.1e-98 365.9 1055 37.8
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 1.1e-98 365.9 694 39.0
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 9.4e-98 362.8 819 36.1
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 6.1e-97 360.1 824 36.7
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 8.0e-97 359.8 858 35.4
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 3.9e-96 357.5 625 41.3
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 6.7e-96 356.7 691 37.8
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 2.2e-94 351.7 809 36.2
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 8.2e-94 349.7 650 39.1
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.4e-93 349.0 652 37.7
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 2.4e-93 348.2 1033 33.3
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.2e-92 345.9 1017 34.3
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 1.6e-92 345.5 594 40.6
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 7.7e-92 343.2 701 38.2
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 2.2e-91 341.7 806 35.7
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 2.9e-91 341.3 524 43.7
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 1.5e-90 339.0 803 36.2
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 3.2e-90 337.8 771 36.7
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 9.4e-90 336.3 1030 32.4
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 3.0e-88 331.3 781 35.5
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.0e-88 331.3 806 34.7
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.0e-88 331.3 806 34.7
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.0e-88 330.9 676 35.4
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 5.2e-88 330.5 1021 36.2
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.2e-87 329.3 814 35.0
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.6e-87 328.2 1071 34.7
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.8e-86 324.7 691 37.6
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 4.8e-86 323.9 1167 35.7
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 6.3e-86 323.6 910 34.0
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 5.3e-85 320.5 1119 37.1
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 7.0e-85 320.1 829 33.3
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.0e-84 318.5 828 32.9
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.3e-83 315.8 605 37.0
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 6.5e-83 313.5 823 33.2
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.1e-82 312.8 1272 33.8
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 2.7e-81 308.1 825 33.2
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 7.5e-79 300.1 820 34.3
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 7.2e-74 283.5 850 32.7
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 1.4e-69 269.2 814 32.1
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 4.3e-66 257.7 769 31.5
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.7e-59 235.7 1223 31.9
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 2.5e-58 231.9 418 38.8
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 6.8e-56 223.8 808 29.6
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 2.0e-55 222.2 670 30.9
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.1e-53 216.5 838 32.2
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 1.5e-50 206.1 617 31.8
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 3.6e-49 201.4 770 29.0
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 8.1e-49 200.3 699 29.3
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 8.9e-48 196.8 695 29.4
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 4.4e-47 194.5 655 30.2
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 1.3e-46 193.0 1142 30.8
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 5.8e-39 167.5 615 29.4
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 1.9e-37 162.5 969 28.0
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 9.2e-37 160.2 607 29.3
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 1.4e-32 146.4 541 31.1
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 9.0e-32 143.7 603 28.0
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 4.2e-29 134.8 563 28.1
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 2.1e-28 132.5 417 30.7
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 6.6e-27 127.5 662 25.2
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 3.1e-24 118.6 369 30.1
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 4.2e-21 108.2 756 25.1
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 7.9e-20 104.0 1084 27.4
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.8e-11 76.3 509 30.8
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 5.6e-10 71.2 639 24.7
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.3e-09 70.1 151 31.1
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.3e-09 70.1 151 31.1
SHI02386 Sapria himalayana HOM05D003962 ORTHO05D004714 3.7e-09 68.6 83 57.8
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.8e-08 66.2 762 22.8
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 4.0e-08 65.1 250 27.6


User provided reference genes

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