Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G012600 Populus trichocarpa HOM05D036398 ORTHO05D331857 9.9e-132 473.4 229 100.0
Potri.012G012100 Populus trichocarpa HOM05D036398 ORTHO05D332632 1.3e-54 217.2 232 54.7
Potri.012G012300 Populus trichocarpa HOM05D036398 ORTHO05D332163 2.8e-49 199.5 230 50.9
HPP92_012667 Vanilla planifolia HOM05D007218 ORTHO05D008812 9.6e-10 68.2 149 32.9
Lj7A544T36 Lonicera japonica HOM05D007218 ORTHO05D008812 2.1e-09 67.0 156 30.8
Sc26g0001500 Simmondsia chinensis HOM05D007218 ORTHO05D008812 6.2e-09 65.5 111 33.3
TWI59G0129 Tripterygium wilfordii HOM05D007218 ORTHO05D008812 1.4e-08 64.3 116 33.6
HanXRQChr13g0423401 Helianthus annuus HOM05D007218 ORTHO05D008812 1.8e-08 63.9 111 32.4
Thecc.01G392800 Theobroma cacao HOM05D007218 ORTHO05D008812 2.4e-08 63.5 111 36.9
MELO3C005979.2 Cucumis melo HOM05D007218 ORTHO05D008812 3.1e-08 63.2 111 36.9
Cpa.g.sc101.26 Carica papaya HOM05D007218 ORTHO05D008812 5.3e-08 62.4 111 33.3
COL.COLO4_12426 Corchorus olitorius HOM05D001866 ORTHO05D001915 5.3e-08 62.4 111 31.5
Duzib133G0872 Durio zibethinus HOM05D007218 ORTHO05D008812 5.3e-08 62.4 111 33.3
Gohir.A08G059200 Gossypium hirsutum HOM05D007218 ORTHO05D008812 5.3e-08 62.4 111 36.9
Gorai.004G071600 Gossypium raimondii HOM05D007218 ORTHO05D008812 5.3e-08 62.4 111 36.9
Hma1.2p1_0041F.1_g025320 Hydrangea macrophylla HOM05D007218 ORTHO05D008812 5.3e-08 62.4 111 33.3
PGR004G1942 Punica granatum HOM05D007218 ORTHO05D008812 5.3e-08 62.4 116 32.8
Sed0023662 Sechium edule HOM05D007218 ORTHO05D008812 6.9e-08 62.0 111 33.3
TAR375G1119 Trochodendron aralioides HOM05D007218 ORTHO05D008812 6.9e-08 62.0 111 32.4
Atru.chr5.157 Acer truncatum HOM05D007218 ORTHO05D008812 9.0e-08 61.6 116 32.8
BcaB02g08171 Brassica carinata HOM05D007218 ORTHO05D008812 1.2e-07 61.2 111 33.3
ECA240G4247 Erigeron canadensis HOM05D007218 ORTHO05D008812 1.2e-07 61.2 111 34.2
Actinidia12651 Actinidia chinensis HOM05D007218 ORTHO05D008812 1.5e-07 60.8 110 33.6
AL5G42610 Arabidopsis lyrata HOM05D007218 ORTHO05D008812 1.5e-07 60.8 111 33.3
A04p01650 Brassica napus HOM05D007218 ORTHO05D008812 1.5e-07 60.8 111 33.3
Lsat_1_v5_gn_3_131281 Lactuca sativa HOM05D007218 ORTHO05D008812 1.5e-07 60.8 111 32.4
Manes.01G272400 Manihot esculenta HOM05D007218 ORTHO05D008812 1.5e-07 60.8 110 33.6
DCAR_015828 Daucus carota HOM05D007218 ORTHO05D008812 2.0e-07 60.5 111 31.5
Cfa011087 Carpinus fangiana HOM05D007218 ORTHO05D008812 2.6e-07 60.1 111 32.4
CsaV3_3G007570 Cucumis sativus L. HOM05D007218 ORTHO05D008812 2.6e-07 60.1 110 35.5
Lj3g0011179 Lotus japonicus HOM05D007218 ORTHO05D008812 2.6e-07 60.1 141 29.1
Ah.05g173180 Amaranthus hybridus HOM05D007218 ORTHO05D008812 3.4e-07 59.7 111 32.4
ATR0057G039 Amborella trichopoda HOM05D007218 ORTHO05D008812 3.4e-07 59.7 111 32.4
AagrBONN_evm.TU.Sc2ySwM_228.5704 Anthoceros agrestis HOM05D007218 ORTHO05D008812 3.4e-07 59.7 111 33.3
BcaC02g10152 Brassica carinata HOM05D007218 ORTHO05D008812 3.4e-07 59.7 111 32.4
Eucgr.D01515 Eucalyptus grandis HOM05D007218 ORTHO05D008812 3.4e-07 59.7 111 32.4
Lalb_Chr07g0195551 Lupinus albus HOM05D007218 ORTHO05D008812 3.4e-07 59.7 111 33.3
Medtr8g006755 Medicago truncatula HOM05D007218 ORTHO05D008812 3.4e-07 59.7 111 32.4
Potri.014G045600 Populus trichocarpa HOM05D007218 ORTHO05D008812 3.4e-07 59.7 111 32.4
SEGI_03520 Sequoiadendron giganteum HOM05D007218 ORTHO05D008812 3.4e-07 59.7 110 31.8
AT3G60370 Arabidopsis thaliana HOM05D007218 ORTHO05D008812 4.4e-07 59.3 111 32.4
CDE02G4644 Ceratophyllum demersum HOM05D007218 ORTHO05D008812 4.4e-07 59.3 110 30.0
Ciclev10021814m.g Citrus clementina HOM05D007218 ORTHO05D008812 4.4e-07 59.3 114 32.5
Thhalv10006207m.g Eutrema salsugineum HOM05D007218 ORTHO05D008812 4.4e-07 59.3 111 32.4
Rhsim11G0040600 Rhododendron simsii HOM05D007218 ORTHO05D008812 5.8e-07 58.9 111 31.5
EL10Ac1g00779 Beta vulgaris HOM05D007218 ORTHO05D008812 7.6e-07 58.5 111 32.4
PSO675G3278 Papaver somniferum HOM05D007218 ORTHO05D008812 7.6e-07 58.5 111 30.6
Sabra14G0033400 Salix brachista HOM05D007218 ORTHO05D008812 7.6e-07 58.5 111 31.5
GSVIVG01018250001 Vitis vinifera HOM05D007218 ORTHO05D008812 7.6e-07 58.5 111 30.6
Nn1g00887 Nelumbo nucifera HOM05D007218 ORTHO05D008812 9.9e-07 58.2 111 31.5
CiPaw.14G021500 Carya illinoinensis HOM05D007218 ORTHO05D008812 1.3e-06 57.8 111 31.5
AUR62013730 Chenopodium quinoa HOM05D007218 ORTHO05D008812 1.3e-06 57.8 168 25.6
AUR62023423 Chenopodium quinoa HOM05D007218 ORTHO05D008812 1.3e-06 57.8 111 32.4
Dinv43633 Davidia involucrata HOM05D007218 ORTHO05D008812 1.3e-06 57.8 111 31.5
Nitab4.5_0010261g0010 Nicotiana tabacum HOM05D007218 ORTHO05D008812 1.3e-06 57.8 111 32.4
Psat4g225320 Pisum sativum HOM05D007218 ORTHO05D008812 1.3e-06 57.8 111 31.5
Carub.0007s2696 Capsella rubella HOM05D007218 ORTHO05D008812 1.7e-06 57.4 111 31.5
MBI04_g36328_MAGBIO Magnolia biondii HOM05D007218 ORTHO05D008812 1.7e-06 57.4 111 32.4
QL04p030910 Quercus lobata HOM05D007218 ORTHO05D008812 1.7e-06 57.4 111 31.5
SMO111G0227 Selaginella moellendorffii HOM05D007218 ORTHO05D008812 1.7e-06 57.4 110 32.7
arahy.Tifrunner.gnm1.ann1.63W3DY Arachis hypogaea HOM05D007218 ORTHO05D008812 2.2e-06 57.0 111 36.9
arahy.Tifrunner.gnm1.ann1.DN3U87 Arachis hypogaea HOM05D007218 ORTHO05D008812 2.2e-06 57.0 111 36.9
FvH4_7g09860 Fragaria vesca HOM05D007218 ORTHO05D008812 2.2e-06 57.0 111 32.4
FAN03G1686 Fragaria x ananassa HOM05D007218 ORTHO05D008812 2.2e-06 57.0 111 32.4
Glyma.07G112600 Glycine max HOM05D007218 ORTHO05D008812 2.2e-06 57.0 111 32.4
VMungo0331G1963 Vigna mungo HOM05D007218 ORTHO05D008812 2.2e-06 57.0 111 32.4
Ca_14058_v3 Cicer arietinum L. HOM05D007218 ORTHO05D008812 3.8e-06 56.2 111 31.5
Glyma.03G114100 Glycine max HOM05D007218 ORTHO05D008812 3.8e-06 56.2 111 32.4
Os07g0490400 Oryza sativa ssp. japonica HOM05D007218 ORTHO05D008812 3.8e-06 56.2 111 30.6
SalBow8G2238 Salvia bowleyana HOM05D007218 ORTHO05D008812 3.8e-06 56.2 111 33.3
Oeu024171.1 Olea europaea HOM05D007218 ORTHO05D008812 4.9e-06 55.8 111 31.5
Aqoxy7G01797 Aquilegia oxysepala HOM05D007218 ORTHO05D008812 6.4e-06 55.5 110 31.8
MD02G1216500 Malus domestica HOM05D007218 ORTHO05D008812 6.4e-06 55.5 111 30.6
RcHm_v2.0_Chr1g0347401 Rosa chinensis HOM05D007218 ORTHO05D008812 6.4e-06 55.5 111 31.5
CSS0012991 Camellia sinensis var. sinensis HOM05D007218 ORTHO05D008812 8.4e-06 55.1 111 30.6
Solyc10g039270.2 Solanum lycopersicum HOM05D007218 ORTHO05D008812 8.4e-06 55.1 111 33.3
Sopen10g012160 Solanum pennellii HOM05D000004 ORTHO05D000002 8.4e-06 55.1 111 33.3
THA.LOC104817195 Tarenaya hassleriana HOM05D007218 ORTHO05D008812 8.4e-06 55.1 111 31.5


User provided reference genes

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