Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.0e-42 176.4 92 100.0
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 5.4e-20 100.9 86 65.1
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 7.0e-20 100.5 83 62.7
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.5e-19 97.8 92 60.9
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 5.9e-19 97.4 77 67.5
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.0e-18 96.7 89 62.9
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.0e-18 96.7 89 64.0
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 1.0e-18 96.7 87 66.7
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.7e-18 95.9 82 61.0
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 2.2e-18 95.5 81 64.2
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 2.2e-18 95.5 85 63.5
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.8e-18 94.7 92 56.5
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 5.0e-18 94.4 92 56.5
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 6.5e-18 94.0 89 57.3
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 8.5e-18 93.6 89 58.4
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 1.5e-17 92.8 80 66.2
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.5e-17 92.0 89 61.8
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 3.2e-17 91.7 78 61.5
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 4.2e-17 91.3 78 60.3
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 4.2e-17 91.3 78 59.0
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.2e-16 89.7 77 63.6
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.6e-16 89.4 78 59.0
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 2.1e-16 89.0 85 60.0
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 2.8e-16 88.6 89 57.3
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 3.6e-16 88.2 84 60.7
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.6e-16 88.2 79 58.2
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 4.7e-16 87.8 78 56.4
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.7e-16 87.8 89 56.2
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 6.1e-16 87.4 93 53.8
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 6.1e-16 87.4 84 59.5
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 1.0e-15 86.7 92 55.4
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 1.0e-15 86.7 81 56.8
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.0e-15 86.7 84 57.1
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.0e-15 86.7 78 59.0
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.0e-15 86.7 85 55.3
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.4e-15 86.3 83 56.6
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.4e-15 86.3 82 58.5
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.8e-15 85.9 89 56.2
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 5.2e-15 84.3 92 55.4
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 5.2e-15 84.3 89 56.2
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 6.8e-15 84.0 82 58.5
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.8e-15 84.0 85 56.5
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 6.8e-15 84.0 79 58.2
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 1.2e-14 83.2 92 54.3
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.2e-14 83.2 80 56.2
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.5e-14 82.8 77 57.1
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 2.0e-14 82.4 77 59.7
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.0e-14 82.4 84 58.3
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 2.0e-14 82.4 84 58.3
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 2.0e-14 82.4 85 56.5
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 2.6e-14 82.0 92 54.3
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 3.4e-14 81.6 92 55.4
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 4.4e-14 81.3 92 52.2
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 5.7e-14 80.9 85 56.5
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 5.7e-14 80.9 85 58.8
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 5.7e-14 80.9 92 56.5
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 7.5e-14 80.5 81 56.8
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 7.5e-14 80.5 89 55.1
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 9.8e-14 80.1 84 57.1
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 9.8e-14 80.1 92 52.2
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 9.8e-14 80.1 83 57.8
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 1.7e-13 79.3 92 52.2
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 1.7e-13 79.3 90 53.3
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.7e-13 79.3 101 50.5
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 2.2e-13 79.0 81 54.3
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 2.2e-13 79.0 92 52.2
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 2.8e-13 78.6 92 53.3
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 3.7e-13 78.2 92 53.3
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.7e-13 78.2 84 51.2
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 4.9e-13 77.8 99 49.5
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 6.3e-13 77.4 77 54.5
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 6.3e-13 77.4 81 53.1
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 8.3e-13 77.0 81 53.1
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.1e-12 76.6 89 51.7
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.1e-12 76.6 92 51.1
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.8e-12 75.9 82 52.4
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 1.8e-12 75.9 89 51.7
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 2.4e-12 75.5 78 56.4
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.1e-12 75.1 90 50.0
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 4.1e-12 74.7 92 53.3
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 5.4e-12 74.3 78 56.4
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 5.4e-12 74.3 89 53.9
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 7.0e-12 73.9 85 52.9
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 7.0e-12 73.9 77 57.1
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 7.0e-12 73.9 82 51.2
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 7.0e-12 73.9 79 55.7
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 7.0e-12 73.9 85 52.9
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 9.2e-12 73.6 78 55.1
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 1.2e-11 73.2 85 54.1
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.2e-11 73.2 89 51.7
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 1.6e-11 72.8 86 51.2
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.6e-11 72.8 85 52.9
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 2.0e-11 72.4 83 50.6
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 2.0e-11 72.4 78 59.0
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.0e-11 72.4 79 51.9
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.0e-11 72.4 79 51.9
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 2.0e-11 72.4 90 47.8
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.7e-11 72.0 89 49.4
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.7e-11 72.0 89 49.4
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 3.5e-11 71.6 92 48.9
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 4.5e-11 71.2 90 50.0
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 4.5e-11 71.2 86 50.0
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.0e-10 70.1 92 51.1
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.0e-10 70.1 92 47.8
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.3e-10 69.7 82 51.2
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 1.3e-10 69.7 86 48.8
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 1.3e-10 69.7 89 50.6
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 1.3e-10 69.7 79 51.9
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.3e-10 68.9 81 50.6
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 2.9e-10 68.6 87 51.7
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 5.0e-10 67.8 82 51.2
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 5.0e-10 67.8 77 50.6
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 6.6e-10 67.4 77 48.1
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 6.6e-10 67.4 80 48.8
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 6.6e-10 67.4 78 50.0
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 6.6e-10 67.4 92 50.0
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 8.6e-10 67.0 85 54.1
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 8.6e-10 67.0 85 54.1
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 8.6e-10 67.0 80 47.5
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 8.6e-10 67.0 83 49.4
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 8.6e-10 67.0 80 47.5
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 8.6e-10 67.0 80 52.5
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 1.1e-09 66.6 89 47.2
Haze_00874 Corylus avellana HOM05D021618 ORTHO05D004480 1.1e-09 66.6 51 64.7
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.1e-09 66.6 89 49.4
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 1.5e-09 66.2 89 49.4
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.5e-09 66.2 94 44.7
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.5e-09 66.2 94 44.7
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.5e-09 65.5 78 48.7
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 3.3e-09 65.1 83 49.4
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.3e-09 65.1 81 46.9
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 4.3e-09 64.7 80 47.5
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 4.3e-09 64.7 80 51.2
Haze_00184 Corylus avellana HOM05D021618 ORTHO05D004480 4.3e-09 64.7 49 65.3
FAN06G1266 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.3e-09 64.7 81 50.6
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.3e-09 64.7 89 48.3
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 7.3e-09 63.9 78 50.0
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.3e-09 63.9 78 50.0
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 9.5e-09 63.5 85 49.4
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 9.5e-09 63.5 66 53.0
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.6e-08 62.8 80 50.0
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 2.1e-08 62.4 80 48.8
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 2.1e-08 62.4 79 45.6
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.1e-08 62.4 91 46.2
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 2.8e-08 62.0 76 47.4
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 2.8e-08 62.0 80 45.0
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 2.8e-08 62.0 76 47.4
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 2.8e-08 62.0 85 47.1
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 2.8e-08 62.0 91 45.1
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 4.7e-08 61.2 80 46.2
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.7e-08 61.2 78 47.4
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 6.1e-08 60.8 80 48.8
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 6.1e-08 60.8 41 68.3
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 8.0e-08 60.5 80 48.8
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 8.0e-08 60.5 93 47.3
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 8.0e-08 60.5 78 46.2
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 1.0e-07 60.1 76 46.1
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 1.0e-07 60.1 87 42.5
CsaV3_5G000560 Cucumis sativus L. HOM05D004051 ORTHO05D004480 1.8e-07 59.3 44 63.6
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.8e-07 59.3 100 46.0
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 1.8e-07 59.3 89 47.2
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.8e-07 59.3 90 42.2
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 2.3e-07 58.9 78 48.7
Prupe.2G311800 Prunus persica HOM05D004051 ORTHO05D004480 2.3e-07 58.9 65 55.4
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 4.0e-07 58.2 74 43.2
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 4.0e-07 58.2 82 46.3
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 5.2e-07 57.8 83 43.4
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.2e-07 57.8 74 48.6
Os06g0530200 Oryza sativa ssp. japonica HOM05D004051 ORTHO05D004480 5.2e-07 57.8 95 41.1
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 6.8e-07 57.4 97 40.2
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 6.8e-07 57.4 84 44.0
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 8.9e-07 57.0 152 32.9
Zm00001eb277870 Zea mays HOM05D004051 ORTHO05D004480 1.2e-06 56.6 95 38.9
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 4.4e-06 54.7 87 46.0


User provided reference genes

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