Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 8.4e-235 816.6 405 100.0
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 5.0e-203 711.1 463 78.8
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 1.1e-199 699.9 463 78.0
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 5.7e-199 697.6 463 77.5
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 2.8e-190 668.7 463 73.4
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 6.8e-176 620.9 467 68.5
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.5e-172 608.6 454 68.3
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 8.6e-171 604.0 454 67.6
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 3.3e-170 602.1 464 66.2
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 5.6e-170 601.3 456 66.9
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 3.7e-166 588.6 456 65.6
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 3.7e-166 588.6 447 67.1
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.4e-165 586.6 458 65.9
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 9.2e-165 583.9 453 66.7
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.2e-164 583.6 446 65.9
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 2.7e-164 582.4 442 67.9
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.5e-164 582.0 453 66.2
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 3.5e-164 582.0 453 66.2
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 1.3e-163 580.1 461 64.9
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.7e-163 579.7 460 65.0
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.7e-163 579.7 450 65.1
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 3.9e-163 578.6 437 67.0
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 5.0e-163 578.2 441 67.1
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 5.6e-162 574.7 445 67.4
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 1.6e-161 573.2 471 64.3
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 6.2e-161 571.2 460 63.7
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 1.8e-160 569.7 449 64.8
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 2.3e-160 569.3 452 63.3
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 8.9e-160 567.4 439 64.9
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 1.5e-159 566.6 478 61.3
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 2.0e-159 566.2 447 66.2
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 4.4e-159 565.1 450 64.4
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 4.4e-159 565.1 450 64.4
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 4.4e-159 565.1 446 65.0
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 5.8e-159 564.7 460 63.3
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 9.8e-159 563.9 435 66.7
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 9.8e-159 563.9 460 62.0
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 9.8e-159 563.9 452 62.4
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 9.8e-159 563.9 449 63.9
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 9.8e-159 563.9 430 66.5
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 1.7e-158 563.1 450 64.4
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.7e-158 563.1 450 64.7
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.7e-158 563.1 450 64.7
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.9e-158 562.4 458 63.3
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 3.7e-158 562.0 427 67.7
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 4.9e-158 561.6 449 63.7
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 6.4e-158 561.2 425 67.8
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.1e-157 560.5 441 64.2
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 1.4e-157 560.1 450 64.2
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 3.2e-157 558.9 437 64.5
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.0e-157 557.8 450 64.2
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 3.5e-156 555.4 459 62.7
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 3.5e-156 555.4 459 61.7
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 7.8e-156 554.3 439 63.3
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.0e-155 553.9 444 63.5
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.3e-155 553.5 448 63.2
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.7e-155 553.1 448 62.9
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 1.7e-155 553.1 445 62.5
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 2.3e-155 552.7 451 63.4
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 2.3e-155 552.7 449 62.8
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 3.0e-155 552.4 454 61.9
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 3.0e-155 552.4 436 64.2
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 6.6e-155 551.2 448 63.4
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 1.1e-154 550.4 449 63.7
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 1.5e-154 550.1 427 65.3
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 3.3e-154 548.9 433 64.0
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 9.5e-154 547.4 451 63.0
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 2.1e-153 546.2 453 61.8
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 3.6e-153 545.4 452 61.9
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 3.6e-153 545.4 423 64.5
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 4.7e-153 545.0 443 63.4
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 4.7e-153 545.0 445 63.1
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 6.2e-153 544.7 435 64.4
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 8.1e-153 544.3 433 64.0
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 8.1e-153 544.3 442 62.9
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 4.0e-152 542.0 430 64.2
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 1.5e-151 540.0 441 63.3
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 2.6e-151 539.3 461 60.7
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.7e-150 536.6 455 60.4
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 2.2e-150 536.2 439 62.2
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 2.9e-150 535.8 433 63.7
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.4e-149 533.5 436 61.9
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 1.4e-149 533.5 454 61.0
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 1.4e-149 533.5 435 63.2
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 1.9e-149 533.1 433 62.1
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 2.4e-149 532.7 431 62.9
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.1e-149 531.9 463 60.5
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 4.1e-149 531.9 444 61.9
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 5.4e-149 531.6 431 62.6
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 7.1e-149 531.2 441 60.5
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 7.1e-149 531.2 431 62.6
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.6e-148 530.0 441 60.5
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 1.6e-148 530.0 447 60.2
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 2.1e-148 529.6 455 60.2
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 2.7e-148 529.3 440 61.4
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 3.5e-148 528.9 445 61.1
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 4.6e-148 528.5 463 59.8
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 4.6e-148 528.5 446 61.7
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 6.0e-148 528.1 441 60.3
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 6.0e-148 528.1 441 60.3
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 2.3e-147 526.2 444 60.8
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.3e-147 526.2 406 65.8
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 6.6e-147 524.6 468 60.3
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 6.6e-147 524.6 462 59.5
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 6.6e-147 524.6 442 62.0
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 8.6e-147 524.2 434 61.8
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 8.6e-147 524.2 440 60.0
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 8.6e-147 524.2 447 60.9
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 8.6e-147 524.2 435 60.7
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.9e-146 523.1 434 61.5
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 1.9e-146 523.1 442 62.2
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 1.9e-146 523.1 461 58.8
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 3.3e-146 522.3 434 61.5
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 5.6e-146 521.5 441 60.1
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 5.6e-146 521.5 444 60.8
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 7.3e-146 521.2 448 61.4
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 9.5e-146 520.8 440 61.4
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 1.6e-145 520.0 433 61.7
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 2.1e-145 519.6 434 61.3
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 2.8e-145 519.2 430 62.1
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 2.8e-145 519.2 442 60.2
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 4.7e-145 518.5 449 59.9
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.2e-143 513.8 459 58.0
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.4e-143 512.3 409 64.3
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 4.4e-143 511.9 391 66.2
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 2.9e-142 509.2 449 58.8
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 6.4e-142 508.1 461 59.7
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 6.4e-142 508.1 459 59.3
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 7.1e-141 504.6 434 60.6
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 9.2e-141 504.2 435 60.0
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 3.5e-140 502.3 429 60.1
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 6.0e-140 501.5 408 62.5
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 7.8e-140 501.1 388 66.0
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 1.7e-139 500.0 381 66.7
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 3.9e-139 498.8 446 58.5
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 3.3e-138 495.7 406 62.8
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 4.7e-137 491.9 401 62.8
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.8e-136 490.0 435 60.0
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 5.1e-131 471.9 447 54.6
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 3.3e-130 469.2 424 56.6
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 8.1e-129 464.5 379 63.3
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.4e-127 459.1 363 64.5
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 7.6e-127 458.0 388 61.3
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 3.0e-123 446.0 374 61.0
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.6e-122 441.8 404 57.9
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.7e-118 430.3 423 56.0
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.5e-111 407.1 442 51.1
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.1e-104 384.4 419 50.6
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.4e-101 374.0 443 49.2
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 4.1e-96 355.9 281 63.0
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.7e-89 334.0 443 43.6
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 5.5e-85 318.9 316 53.5
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 9.4e-77 291.6 237 61.2
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.8e-75 287.3 440 40.2
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.2e-75 285.8 249 61.4
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 4.2e-69 266.2 231 59.3
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 1.6e-68 264.2 425 39.5
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 7.5e-66 255.4 440 36.4
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 6.8e-59 232.3 267 51.3
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 3.4e-58 229.9 382 38.0
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 2.2e-49 200.7 126 75.4
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 1.9e-48 197.6 165 63.0
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 8.6e-38 162.2 126 64.3
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 8.6e-38 162.2 95 78.9
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 9.5e-37 158.7 392 31.4
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 6.0e-31 139.4 85 78.8
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.9e-30 136.7 79 82.3
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 2.3e-22 110.9 93 59.1
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 1.4e-19 101.7 78 60.3
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 4.0e-11 73.6 79 49.4
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 2.9e-09 67.4 53 58.5


User provided reference genes

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