Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 7.2e-83 310.5 148 100.0
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 5.0e-76 287.7 148 91.2
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.5e-67 258.8 148 80.4
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 9.4e-67 256.9 148 81.1
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 1.2e-66 256.5 148 80.4
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 3.6e-66 255.0 148 80.4
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 3.9e-65 251.5 149 79.9
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 3.9e-65 251.5 149 79.9
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 5.2e-65 251.1 148 80.4
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 5.2e-65 251.1 148 77.7
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 6.7e-65 250.8 146 80.1
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 8.8e-65 250.4 148 79.1
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 8.8e-65 250.4 148 77.7
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.5e-64 249.6 148 78.4
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.5e-64 249.6 148 78.4
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 3.3e-64 248.4 148 79.1
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 5.7e-64 247.7 148 77.7
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 5.7e-64 247.7 148 77.7
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 7.4e-64 247.3 148 75.7
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 9.7e-64 246.9 139 82.0
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 2.2e-63 245.7 148 77.0
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 3.7e-63 245.0 149 78.5
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 1.1e-62 243.4 148 77.0
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.8e-62 242.7 148 75.0
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 1.8e-62 242.7 148 75.7
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 3.1e-62 241.9 148 75.7
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 4.1e-62 241.5 149 77.2
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 5.3e-62 241.1 150 78.0
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 5.3e-62 241.1 148 77.0
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 7.0e-62 240.7 148 75.7
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 9.1e-62 240.4 148 74.3
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.6e-61 239.6 148 75.7
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 2.0e-61 239.2 149 75.8
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.0e-61 239.2 148 75.7
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 3.5e-61 238.4 146 75.3
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 3.5e-61 238.4 150 72.7
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 3.5e-61 238.4 148 75.0
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 3.5e-61 238.4 148 77.0
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 4.5e-61 238.0 148 75.7
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 4.5e-61 238.0 148 75.0
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.0e-60 236.9 148 74.3
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.0e-60 236.9 148 74.3
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.3e-60 236.5 148 72.3
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.7e-60 236.1 149 76.5
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 1.7e-60 236.1 148 73.6
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 1.7e-60 236.1 148 73.6
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 1.7e-60 236.1 148 73.6
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 2.9e-60 235.3 148 75.0
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 2.9e-60 235.3 148 71.6
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 2.9e-60 235.3 148 73.6
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.8e-60 235.0 149 74.5
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.8e-60 235.0 149 74.5
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 3.8e-60 235.0 148 75.7
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 3.8e-60 235.0 149 76.5
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 6.5e-60 234.2 148 73.0
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 6.5e-60 234.2 148 74.3
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 8.5e-60 233.8 148 73.6
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.1e-59 233.4 148 74.3
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.1e-59 233.4 149 74.5
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 1.5e-59 233.0 148 74.3
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 1.9e-59 232.6 148 73.6
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.9e-59 232.6 148 72.3
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.9e-59 232.6 148 73.6
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 3.2e-59 231.9 146 70.5
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 4.2e-59 231.5 149 71.8
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 5.5e-59 231.1 148 73.6
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 5.5e-59 231.1 148 72.3
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 7.2e-59 230.7 148 74.3
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 7.2e-59 230.7 148 74.3
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 7.2e-59 230.7 148 73.6
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 9.4e-59 230.3 148 73.0
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.2e-58 229.9 148 75.0
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.6e-58 229.6 149 74.5
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.7e-58 228.8 148 73.0
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 3.6e-58 228.4 150 72.0
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.6e-58 228.4 148 71.6
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.6e-58 228.4 132 80.3
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 3.6e-58 228.4 132 80.3
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.7e-58 228.0 132 79.5
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 4.7e-58 228.0 148 69.6
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 4.7e-58 228.0 148 72.3
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 1.0e-57 226.9 148 71.6
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.0e-57 226.9 148 70.9
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 1.0e-57 226.9 148 70.3
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.8e-57 226.1 148 73.6
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 3.0e-57 225.3 148 71.6
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 5.2e-57 224.6 139 75.5
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 6.7e-57 224.2 151 73.5
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 6.7e-57 224.2 151 72.8
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 8.8e-57 223.8 149 70.5
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 1.2e-56 223.4 148 70.9
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 1.5e-56 223.0 148 69.6
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 2.6e-56 222.2 151 71.5
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 3.3e-56 221.9 145 69.7
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 4.4e-56 221.5 132 79.5
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 7.5e-56 220.7 143 73.4
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.3e-55 219.9 150 71.3
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 1.3e-55 219.9 149 71.8
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.3e-55 219.9 148 69.6
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.3e-55 219.9 150 71.3
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 1.3e-55 219.9 149 71.8
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.3e-55 219.9 150 71.3
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 2.2e-55 219.2 148 68.2
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 2.2e-55 219.2 148 70.3
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.8e-55 218.8 149 72.5
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 6.3e-55 217.6 148 66.2
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 8.2e-55 217.2 150 70.7
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 8.2e-55 217.2 148 66.2
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 1.1e-54 216.9 149 68.5
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.4e-54 216.5 149 69.8
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 2.4e-54 215.7 148 68.2
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 3.1e-54 215.3 152 71.1
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 5.3e-54 214.5 149 70.5
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 5.3e-54 214.5 149 70.5
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 7.0e-54 214.2 150 69.3
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 7.0e-54 214.2 150 69.3
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 9.1e-54 213.8 148 66.2
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 9.1e-54 213.8 127 78.0
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 9.1e-54 213.8 149 69.8
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 2.0e-53 212.6 150 68.7
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 2.0e-53 212.6 153 66.7
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 4.5e-53 211.5 148 71.6
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 4.5e-53 211.5 136 72.8
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 4.5e-53 211.5 148 66.2
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.0e-52 210.3 150 68.0
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.3e-52 209.9 148 68.2
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.3e-52 209.9 148 68.2
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.3e-52 209.9 148 68.2
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 6.5e-52 207.6 148 66.2
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 8.5e-52 207.2 133 71.4
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 1.9e-51 206.1 150 68.0
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 1.9e-51 206.1 150 68.0
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.2e-50 203.4 148 64.2
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 4.7e-50 201.4 148 61.5
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 1.0e-49 200.3 148 60.1
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.8e-49 199.5 148 63.5
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.2e-48 196.8 134 71.6
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.2e-48 196.8 119 75.6
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.2e-48 196.8 151 63.6
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 7.5e-48 194.1 124 71.8
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 7.0e-46 187.6 150 62.0
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 2.3e-44 182.6 134 65.7
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 2.8e-42 175.6 148 62.2
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 9.8e-40 167.2 103 78.6
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 6.3e-39 164.5 103 73.8
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.1e-38 162.2 148 58.1
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 7.8e-37 157.5 148 57.4
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.3e-36 156.0 127 65.4
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 1.9e-35 152.9 150 52.0
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 4.9e-31 138.3 124 56.5
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 1.5e-24 116.7 166 42.2
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 4.1e-22 108.6 77 71.4
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 2.3e-20 102.8 69 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 3.0e-20 102.4 90 51.1
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 3.9e-20 102.1 128 47.7
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 1.1e-11 73.9 92 38.0
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 1.5e-08 63.5 37 67.6


User provided reference genes

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