Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2313.1 1150 100.0
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2179.8 1197 91.9
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2142.5 1146 92.7
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 1946.4 1147 83.8
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 1929.1 1147 82.2
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 1914.8 1146 81.7
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 1901.7 1148 80.8
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 1880.5 1146 79.6
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 1879.0 1147 79.4
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 1877.8 1152 79.9
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 1871.3 1146 79.7
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 1869.7 1147 80.1
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1862.0 1146 78.7
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1857.4 1149 78.5
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1850.1 1146 78.3
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 1848.9 1147 79.5
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 1845.5 1149 77.9
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1845.5 1149 77.9
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1842.8 1149 77.8
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 1840.9 1163 76.6
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 1840.9 1148 78.7
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 1839.7 1146 78.0
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1839.3 1149 77.9
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1838.2 1149 77.7
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 1837.4 1146 78.5
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 1835.8 1146 77.2
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 1833.2 1148 78.9
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 1829.7 1093 81.7
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 1820.4 1146 76.7
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 1810.8 1146 76.4
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 1790.8 1149 75.8
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 1780.0 1101 78.9
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 1777.3 1149 75.3
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 1776.9 1146 75.0
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 1775.0 1149 74.8
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 1774.2 1149 75.0
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 1773.8 1149 74.8
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 1768.1 1149 74.0
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 1767.3 1149 74.5
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 1766.1 1171 75.7
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 1765.7 1149 74.8
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 1754.6 1147 75.1
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 1751.5 1149 74.2
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 1751.5 1152 74.7
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 1747.3 1146 73.5
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 1746.5 1146 74.3
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 1746.1 1148 74.8
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 1743.4 1147 76.0
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 1743.0 1146 74.2
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 1740.3 1148 74.7
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 1737.2 1147 74.8
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 1736.5 1146 73.0
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 1731.5 1147 73.7
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 1730.7 1149 73.8
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1730.7 1147 72.8
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 1725.7 1146 74.0
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 1724.5 1150 73.9
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 1722.6 1148 72.9
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 1722.2 1150 73.8
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 1720.7 1147 73.9
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 1720.3 1148 73.4
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 1719.1 1149 73.5
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 1716.8 1147 72.4
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 1716.4 1148 73.3
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 1715.7 1146 73.5
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 1715.3 1148 73.4
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 1715.3 1175 71.7
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 1714.1 1150 73.4
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 1713.7 1148 73.3
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 1711.0 1148 73.2
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 1710.7 1146 72.4
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 1708.3 1148 73.1
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 1705.6 1231 68.7
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 1705.6 1148 73.2
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 1697.6 1149 72.8
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 1697.6 1149 74.8
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 1694.1 1198 69.9
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 1692.2 1146 71.6
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 1684.5 1146 71.6
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 1682.5 1146 71.2
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 1682.2 1095 75.3
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 1676.4 1146 71.6
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 1666.0 1072 75.7
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 1654.8 1005 81.4
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 1654.0 1146 71.0
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 1654.0 1146 71.3
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 1651.0 1125 72.3
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 1634.0 1146 70.7
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 1632.8 1151 69.9
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 1631.3 1147 69.8
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 1620.5 1138 69.0
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 1611.7 1147 69.6
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 1594.7 1275 64.2
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 1568.9 1151 67.2
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 1555.4 1171 67.1
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 1545.0 1146 67.3
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 1517.3 1161 64.5
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 1490.7 954 76.8
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 1463.0 978 73.9
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1436.4 944 73.8
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1427.9 893 79.8
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 1421.8 1151 60.9
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 3.0e-309 1065.4 967 59.8
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.5e-308 1063.1 721 72.8
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 1.9e-303 1046.2 644 79.0
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 1.0e-293 1013.8 798 64.4
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 6.2e-275 951.4 999 50.4
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 6.9e-274 948.0 1159 43.1
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 3.4e-273 945.7 1176 43.9
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 1.9e-271 939.9 1178 43.8
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 4.8e-251 872.1 1181 40.5
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 2.4e-250 869.8 689 61.4
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 7.9e-238 828.2 1111 41.1
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 2.0e-236 823.5 1169 40.0
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.9e-223 780.4 1095 40.5
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 8.6e-208 728.4 1224 35.0
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 9.5e-207 724.9 1146 36.4
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 2.4e-173 614.0 725 51.0
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 3.7e-142 510.4 640 48.8
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.4e-138 498.4 458 54.1
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 2.8e-118 431.0 308 70.5
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 4.0e-104 384.0 301 63.5
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 4.0e-104 384.0 220 76.4
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 6.5e-99 366.7 247 78.1
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 3.6e-89 334.3 1096 26.1
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.1e-80 304.7 359 51.8
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 1.2e-79 302.8 345 53.0
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 5.4e-77 293.9 225 61.3
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 7.8e-76 290.0 193 75.6
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 4.3e-74 284.3 166 76.5
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 2.6e-63 248.4 1042 24.5
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.5e-34 152.9 210 44.8
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 9.6e-34 150.2 147 46.9
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 1.8e-27 129.4 651 22.9
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 1.5e-23 116.3 74 68.9
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 4.5e-23 114.8 1087 19.9
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 3.8e-22 111.7 74 68.9
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 3.2e-21 108.6 71 77.5
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 7.2e-21 107.5 65 81.5
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 7.9e-20 104.0 74 71.6
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 3.9e-11 75.1 78 55.1
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 8.8e-11 73.9 63 54.0


User provided reference genes

Program Settings