Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.9e-227 791.6 411 100.0
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 3.1e-216 755.0 411 94.6
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 4.1e-213 744.6 416 93.0
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.3e-211 738.8 448 88.8
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 1.1e-197 693.3 411 86.9
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 6.0e-196 687.6 412 87.1
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 6.0e-196 687.6 411 86.4
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 6.6e-195 684.1 410 86.3
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 2.5e-194 682.2 411 86.6
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 3.6e-193 678.3 411 84.9
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 7.6e-191 670.6 411 85.2
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 6.4e-190 667.5 411 84.7
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 3.2e-189 665.2 412 84.2
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 4.2e-189 664.8 414 84.3
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 6.0e-188 661.0 409 84.4
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 6.0e-188 661.0 412 83.5
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.0e-187 660.2 411 84.2
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 1.3e-187 659.8 410 82.4
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 3.9e-187 658.3 413 83.3
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 6.6e-187 657.5 411 83.2
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.5e-186 656.4 412 82.5
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 2.5e-186 655.6 413 83.1
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.6e-186 654.4 412 82.3
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 9.6e-186 653.7 412 83.3
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.6e-185 652.9 411 82.7
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 3.6e-185 651.7 409 83.6
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 4.8e-185 651.4 424 81.4
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.4e-184 649.8 420 81.0
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.5e-183 646.4 411 82.0
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 3.4e-183 645.2 415 81.4
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 4.4e-183 644.8 409 82.6
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 7.6e-183 644.0 415 81.4
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.3e-182 643.3 413 82.3
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.2e-182 642.5 422 80.3
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 6.4e-182 641.0 430 80.0
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 6.4e-182 641.0 411 82.0
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.1e-181 640.2 411 81.8
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 1.9e-181 639.4 415 81.0
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 2.4e-181 639.0 409 82.6
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.2e-181 638.3 422 79.9
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 5.4e-181 637.9 417 81.1
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 5.4e-181 637.9 411 81.0
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 7.1e-181 637.5 419 81.1
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 1.2e-180 636.7 412 79.9
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 2.1e-180 636.0 409 82.4
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 3.5e-180 635.2 412 80.8
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 7.8e-180 634.0 413 80.1
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 7.8e-180 634.0 425 78.4
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 1.0e-179 633.6 413 79.7
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.3e-179 633.3 442 76.7
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.3e-179 633.3 411 79.1
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 3.9e-179 631.7 411 78.8
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 5.1e-179 631.3 442 76.2
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 1.1e-178 630.2 406 79.8
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 1.5e-178 629.8 415 79.0
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 2.5e-178 629.0 415 79.8
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.3e-178 628.2 411 78.6
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 7.3e-178 627.5 417 80.3
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 1.3e-177 626.7 412 79.6
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.8e-177 625.5 411 80.0
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 3.6e-177 625.2 411 78.3
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 3.6e-177 625.2 415 79.5
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 3.6e-177 625.2 411 79.3
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 4.8e-177 624.8 411 79.8
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 6.2e-177 624.4 416 79.8
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 1.4e-176 623.2 415 78.8
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 1.8e-176 622.9 411 78.1
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 1.8e-176 622.9 415 78.1
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 1.2e-175 620.2 413 77.7
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 2.0e-175 619.4 418 78.0
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 2.6e-175 619.0 413 78.5
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 1.7e-174 616.3 415 77.8
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 2.2e-174 615.9 420 78.6
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 2.9e-174 615.5 412 78.9
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 3.8e-174 615.1 412 78.6
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 3.8e-174 615.1 407 79.4
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 4.9e-174 614.8 411 77.6
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 2.4e-173 612.5 415 78.3
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 5.4e-173 611.3 414 78.5
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 9.3e-173 610.5 434 75.1
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 9.3e-173 610.5 413 78.0
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.2e-172 610.1 424 75.5
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 3.5e-172 608.6 413 78.0
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 4.6e-172 608.2 420 77.6
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 7.9e-172 607.4 422 77.3
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 1.0e-171 607.1 414 77.3
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 1.3e-171 606.7 414 77.3
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 1.8e-171 606.3 412 75.7
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.9e-170 602.8 411 77.9
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 9.6e-170 600.5 409 76.5
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 3.1e-168 595.5 414 76.6
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 3.1e-168 595.5 409 76.3
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 4.0e-168 595.1 412 77.2
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 9.0e-168 594.0 415 76.9
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 1.5e-167 593.2 417 76.5
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 2.0e-167 592.8 342 89.5
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 2.5e-165 585.9 391 77.5
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 5.5e-165 584.7 360 85.0
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.5e-159 566.6 416 72.4
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.2e-158 562.8 361 81.2
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.2e-158 562.8 361 81.2
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 2.7e-156 555.8 412 74.3
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 2.5e-154 549.3 350 80.0
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 9.0e-152 540.8 414 69.3
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.0e-150 537.3 479 64.5
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.0e-150 537.3 479 64.5
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.5e-146 523.5 411 69.1
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.5e-146 523.5 316 84.5
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 4.3e-146 521.9 419 69.5
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 4.5e-143 511.9 357 76.5
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 7.9e-140 501.1 361 73.4
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 4.5e-135 485.3 419 62.3
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 4.2e-125 452.2 424 55.4
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 4.7e-124 448.7 428 61.0
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 5.9e-119 431.8 407 61.7
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 5.2e-115 418.7 272 79.8
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 1.1e-112 411.0 372 58.6
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.0e-107 392.9 342 64.3
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 2.9e-105 386.3 324 67.0
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.4e-96 356.7 365 60.0
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 2.7e-87 326.6 316 54.4
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 4.7e-84 315.8 419 44.6
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.1e-79 300.4 261 64.0
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.1e-77 294.7 425 41.4
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.1e-69 268.1 469 36.9
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.1e-69 268.1 464 39.4
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.4e-64 251.1 326 45.7
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.1e-59 235.0 126 88.9
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 9.9e-58 228.4 135 84.4
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 7.9e-55 218.8 316 42.7
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 4.2e-48 196.4 333 37.5
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 3.5e-47 193.4 336 35.7
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.0e-46 190.3 116 81.0
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 5.1e-46 189.5 116 81.0
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 6.9e-43 179.1 130 72.3
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 7.6e-42 175.6 130 71.5
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 1.3e-36 158.3 99 81.8
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 5.5e-32 142.9 154 57.8
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 9.1e-27 125.6 117 59.0
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 1.6e-23 114.8 65 86.2
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.1e-23 114.4 58 86.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.8e-19 101.3 102 55.9
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 4.1e-19 100.1 133 48.9
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 1.0e-17 95.5 98 58.2
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 5.0e-17 93.2 73 67.1
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 7.2e-16 89.4 65 69.2
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 8.8e-14 82.4 56 78.6
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 5.7e-13 79.7 47 83.0
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 4.1e-11 73.6 49 67.3
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 4.1e-11 73.6 101 42.6
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 5.9e-10 69.7 70 57.1
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 7.7e-10 69.3 42 83.3
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 2.9e-09 67.4 50 62.0
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 6.5e-09 66.2 36 86.1
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 6.5e-09 66.2 36 86.1
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 6.5e-09 66.2 36 86.1
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 8.5e-09 65.9 82 50.0
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 8.5e-09 65.9 72 56.9
Lj3C745G8 Lonicera japonica HOM05D000041 ORTHO05D000452 1.5e-08 65.1 94 48.9
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 5.5e-08 63.2 102 43.1
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 7.2e-08 62.8 97 43.3
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 1.6e-07 61.6 36 86.1
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 2.7e-07 60.8 50 62.0
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 2.7e-07 60.8 37 75.7
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 5.2e-06 56.6 120 27.5
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 6.8e-06 56.2 120 27.5
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 6.8e-06 56.2 120 27.5
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 8.8e-06 55.8 120 27.5
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 8.8e-06 55.8 120 27.5


User provided reference genes

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