Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 2.8e-196 688.3 328 100.0
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 3.1e-147 525.4 267 93.3
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 6.1e-135 484.6 280 81.1
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 1.4e-131 473.4 296 77.7
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.8e-131 473.0 280 80.0
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 4.1e-131 471.9 280 79.6
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 2.7e-130 469.2 282 79.1
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 3.0e-129 465.7 281 77.2
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 2.5e-128 462.6 277 77.6
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 7.3e-128 461.1 300 75.7
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 9.5e-128 460.7 292 74.7
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 6.2e-127 458.0 284 75.7
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 1.4e-126 456.8 280 77.5
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 6.8e-126 454.5 277 76.9
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 8.9e-126 454.1 277 75.8
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 3.7e-124 448.7 279 76.7
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 6.4e-124 448.0 278 74.8
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 1.9e-123 446.4 245 86.9
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 4.1e-123 445.3 325 69.5
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 7.0e-123 444.5 280 77.1
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 1.6e-122 443.4 279 74.9
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 7.8e-122 441.0 280 75.0
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 1.7e-121 439.9 279 73.1
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 1.7e-121 439.9 277 73.6
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 1.7e-121 439.9 328 66.5
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 6.6e-121 438.0 281 72.6
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 8.6e-121 437.6 280 75.4
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 1.1e-120 437.2 277 74.4
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 1.5e-120 436.8 277 72.6
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 1.9e-120 436.4 279 73.8
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 1.9e-120 436.4 279 73.5
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 4.3e-120 435.3 277 72.2
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 5.6e-120 434.9 280 75.0
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 7.3e-120 434.5 277 73.6
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 1.6e-119 433.3 280 75.0
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 6.2e-119 431.4 281 74.0
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 8.1e-119 431.0 279 72.8
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.4e-118 430.3 280 75.0
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 1.4e-118 430.3 278 71.2
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 1.4e-118 430.3 315 66.3
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.8e-118 429.9 326 66.3
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.8e-118 429.9 326 66.3
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 4.0e-118 428.7 282 74.1
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 4.0e-118 428.7 276 71.0
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 5.2e-118 428.3 281 73.7
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 6.8e-118 427.9 281 73.7
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 6.8e-118 427.9 282 73.8
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 1.2e-117 427.2 280 72.1
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 1.2e-117 427.2 280 73.2
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 1.5e-117 426.8 280 71.4
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 2.6e-117 426.0 281 74.0
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 4.4e-117 425.2 278 73.4
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 7.5e-117 424.5 276 74.3
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 2.2e-116 422.9 281 73.0
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 2.2e-116 422.9 279 72.4
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 6.4e-116 421.4 279 71.3
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 1.1e-115 420.6 282 70.6
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 1.1e-115 420.6 275 70.9
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 1.4e-115 420.2 280 72.9
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 1.4e-115 420.2 280 72.9
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 1.9e-115 419.9 280 72.9
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.9e-115 419.9 288 68.8
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 4.1e-115 418.7 275 69.8
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 5.4e-115 418.3 279 69.5
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 2.1e-114 416.4 277 70.8
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 1.0e-113 414.1 279 68.8
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 1.7e-113 413.3 279 73.1
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 5.1e-113 411.8 274 69.3
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.5e-112 410.2 267 69.3
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 2.5e-112 409.5 277 69.3
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 2.5e-112 409.5 278 69.4
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 4.3e-112 408.7 283 68.2
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 4.3e-112 408.7 283 68.2
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 7.3e-112 407.9 285 67.4
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.4e-110 403.7 288 66.0
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 4.4e-109 398.7 259 70.3
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 2.2e-108 396.4 277 69.0
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 7.1e-107 391.3 353 56.1
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 3.5e-106 389.0 315 60.3
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 3.0e-105 386.0 284 64.1
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 3.0e-105 386.0 284 64.1
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 4.3e-104 382.1 281 65.8
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 9.6e-104 380.9 391 51.4
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 3.6e-103 379.0 306 60.1
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 6.8e-102 374.8 400 50.2
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 2.0e-101 373.2 236 73.3
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 2.9e-100 369.4 308 58.8
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 4.9e-100 368.6 280 61.4
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 4.2e-99 365.5 274 63.5
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 4.6e-98 362.1 277 62.5
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.0e-97 360.9 279 64.2
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 3.0e-97 359.4 282 63.1
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 6.6e-97 358.2 322 57.5
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 3.3e-96 355.9 278 62.6
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 9.6e-96 354.4 279 62.7
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 6.2e-95 351.7 237 70.0
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 2.7e-90 336.3 288 59.7
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 2.1e-87 326.6 261 59.0
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 3.8e-84 315.8 224 71.0
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 8.4e-84 314.7 186 78.0
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 5.1e-81 305.4 273 55.7
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 2.5e-80 303.1 216 66.7
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 2.1e-79 300.1 322 50.0
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.5e-77 293.9 228 61.4
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 4.5e-77 292.4 304 50.7
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 7.6e-77 291.6 187 72.2
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.8e-73 280.4 188 68.1
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 9.0e-70 268.1 268 51.1
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 7.4e-64 248.4 253 48.2
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 1.4e-62 244.2 144 78.5
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 7.7e-61 238.4 249 45.8
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 2.2e-60 236.9 259 46.7
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.4e-57 227.6 252 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 6.3e-55 218.8 200 55.5
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 1.4e-41 174.5 120 65.8
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 5.2e-41 172.6 111 70.3
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 7.0e-38 162.2 98 77.6
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 2.8e-31 140.2 128 61.7
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 8.3e-31 138.7 89 71.9
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 4.1e-30 136.3 90 66.7
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 2.7e-29 133.7 94 63.8
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 5.9e-29 132.5 89 71.9
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 7.7e-29 132.1 95 69.5
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 3.2e-27 126.7 116 60.3
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 2.1e-26 124.0 93 63.4
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 1.2e-24 118.2 91 63.7
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 2.2e-23 114.0 59 91.5
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 2.4e-22 110.5 109 49.5
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 3.1e-22 110.2 61 78.7
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 2.7e-21 107.1 75 69.3
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 5.0e-20 102.8 52 86.5
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 1.9e-19 100.9 112 45.5
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.9e-19 100.9 55 74.5
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 5.6e-19 99.4 64 70.3
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 3.9e-12 76.6 38 81.6
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 3.3e-11 73.6 36 77.8
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 5.6e-11 72.8 67 55.2
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 7.3e-11 72.4 57 57.9
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 4.7e-10 69.7 46 67.4
Haze_05939 Corylus avellana HOM05D005284 ORTHO05D006609 4.0e-09 66.6 42 76.2
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 5.8e-08 62.8 37 67.6
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 5.8e-08 62.8 37 67.6
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 4.9e-07 59.7 53 50.9


User provided reference genes

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