Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 3.2e-81 305.8 268 100.0
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 7.0e-36 155.2 102 77.5
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 8.5e-26 121.7 112 50.9
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 3.0e-23 113.2 98 57.1
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 3.4e-22 109.8 90 58.9
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 1.4e-20 104.4 66 81.8
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 1.8e-20 104.0 118 46.6
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 2.4e-20 103.6 97 53.6
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 3.1e-20 103.2 66 80.3
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 5.4e-20 102.4 97 53.6
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 1.2e-19 101.3 94 52.1
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 1.6e-19 100.9 90 53.3
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.3e-18 97.1 96 47.9
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.9e-18 96.7 96 46.9
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 3.8e-18 96.3 114 42.1
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 3.8e-18 96.3 112 49.1
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 5.0e-18 95.9 109 43.1
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 5.0e-18 95.9 92 47.8
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 8.6e-18 95.1 104 49.0
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 3.3e-17 93.2 100 52.0
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 4.2e-17 92.8 90 47.8
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 7.2e-17 92.0 89 47.2
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 7.2e-17 92.0 92 53.3
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 7.2e-17 92.0 91 49.5
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 9.5e-17 91.7 92 50.0
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 9.5e-17 91.7 122 39.3
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 9.5e-17 91.7 89 47.2
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 9.5e-17 91.7 104 47.1
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 9.5e-17 91.7 104 47.1
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.2e-16 91.3 106 44.3
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 1.2e-16 91.3 90 48.9
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 1.6e-16 90.9 118 42.4
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 2.1e-16 90.5 112 44.6
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 2.1e-16 90.5 124 38.7
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 4.7e-16 89.4 118 41.5
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 4.7e-16 89.4 94 42.6
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 8.0e-16 88.6 124 37.9
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 1.0e-15 88.2 124 37.9
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 1.0e-15 88.2 90 48.9
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 1.8e-15 87.4 118 41.5
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.3e-15 87.0 92 44.6
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 2.3e-15 87.0 99 47.5
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 4.0e-15 86.3 82 52.4
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 6.8e-15 85.5 86 44.2
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 8.9e-15 85.1 91 42.9
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 1.5e-14 84.3 92 45.7
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.0e-14 84.0 119 42.0
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 2.0e-14 84.0 95 46.3
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 2.6e-14 83.6 105 42.9
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 1.7e-13 80.9 89 44.9
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 2.2e-13 80.5 90 44.4
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 2.2e-13 80.5 92 45.7
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.2e-13 80.5 111 42.3
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 2.8e-13 80.1 87 43.7
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 8.3e-13 78.6 89 41.6
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.1e-12 78.2 89 42.7
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 1.1e-12 78.2 89 44.9
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 1.4e-12 77.8 92 50.0
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 1.8e-12 77.4 92 43.5
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 4.1e-12 76.3 92 45.7
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 4.1e-12 76.3 89 46.1
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 7.0e-12 75.5 93 44.1
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 9.2e-12 75.1 92 40.2
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 1.2e-11 74.7 93 41.9
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.7e-11 73.6 101 43.6
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 3.5e-11 73.2 116 39.7
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 1.0e-10 71.6 92 40.2
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 2.9e-10 70.1 104 40.4
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 2.9e-10 70.1 91 35.2
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 8.6e-10 68.6 108 38.0
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 8.6e-10 68.6 119 38.7
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 2.5e-09 67.0 109 40.4
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 2.5e-09 67.0 104 42.3
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 3.3e-09 66.6 103 41.7
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 3.3e-09 66.6 94 42.6
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 4.3e-09 66.2 94 42.6
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 4.3e-09 66.2 94 42.6
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 4.3e-09 66.2 94 42.6
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 4.3e-09 66.2 104 38.5
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 5.6e-09 65.9 104 38.5
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 5.6e-09 65.9 104 39.4
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 9.5e-09 65.1 62 54.8
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 9.5e-09 65.1 115 39.1
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.1e-08 63.9 112 36.6
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 2.1e-08 63.9 92 38.0
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 3.6e-08 63.2 100 40.0
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 3.6e-08 63.2 94 41.5
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.0e-07 61.6 89 43.8
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 3.1e-07 60.1 101 33.7
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 8.9e-07 58.5 55 50.9
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 7.5e-06 55.5 86 39.5


User provided reference genes

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