Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 1.0e-25 119.4 64 100.0
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 4.4e-21 104.0 64 84.4
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 3.7e-20 100.9 64 81.2
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 1.1e-19 99.4 64 78.1
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 5.4e-19 97.1 64 76.6
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 1.2e-18 95.9 60 81.7
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 2.7e-18 94.7 60 80.0
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 2.7e-18 94.7 62 77.4
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 2.7e-18 94.7 62 77.4
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 4.6e-18 94.0 62 77.4
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 5.9e-18 93.6 62 75.8
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 3.9e-17 90.9 61 78.7
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 5.0e-17 90.5 61 73.8
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 6.6e-17 90.1 60 73.3
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 4.3e-16 87.4 62 72.6
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 5.6e-16 87.0 65 72.3
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 7.3e-16 86.7 61 75.4
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 1.2e-15 85.9 61 73.8
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 1.2e-15 85.9 57 73.7
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 3.6e-15 84.3 59 71.2
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 3.6e-15 84.3 59 71.2
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 3.6e-15 84.3 59 71.2
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 4.7e-15 84.0 52 78.8
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 6.2e-15 83.6 65 67.7
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 8.0e-15 83.2 52 75.0
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 8.0e-15 83.2 62 69.4
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 1.4e-14 82.4 61 68.9
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 1.4e-14 82.4 64 67.2
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 1.8e-14 82.0 64 67.2
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 1.8e-14 82.0 53 77.4
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 2.3e-14 81.6 64 65.6
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 2.3e-14 81.6 64 65.6
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 2.3e-14 81.6 53 81.1
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 3.1e-14 81.3 59 67.8
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 3.1e-14 81.3 53 69.8
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 4.0e-14 80.9 60 71.7
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 4.0e-14 80.9 60 73.3
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 5.2e-14 80.5 52 75.0
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 6.8e-14 80.1 59 67.8
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 6.8e-14 80.1 59 67.8
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 6.8e-14 80.1 59 67.8
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 6.8e-14 80.1 60 71.7
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 1.2e-13 79.3 59 66.1
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 1.5e-13 79.0 59 69.5
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 1.5e-13 79.0 58 69.0
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 2.0e-13 78.6 63 66.7
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 2.0e-13 78.6 59 66.1
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 2.0e-13 78.6 55 67.3
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 2.0e-13 78.6 55 67.3
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 2.6e-13 78.2 55 67.3
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 3.4e-13 77.8 59 64.4
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 4.4e-13 77.4 57 70.2
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 5.8e-13 77.0 68 60.3
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 5.8e-13 77.0 63 66.7
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 5.8e-13 77.0 51 78.4
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 9.8e-13 76.3 57 68.4
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 1.3e-12 75.9 52 69.2
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 1.7e-12 75.5 55 70.9
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 2.9e-12 74.7 50 72.0
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 4.9e-12 73.9 63 61.9
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 1.1e-11 72.8 63 58.7
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 1.4e-11 72.4 67 58.2
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 1.9e-11 72.0 51 72.5
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.9e-11 72.0 51 72.5
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 2.4e-11 71.6 55 60.0
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 2.4e-11 71.6 55 60.0
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 3.2e-11 71.2 51 70.6
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 3.2e-11 71.2 51 70.6
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 4.1e-11 70.9 48 70.8
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 4.1e-11 70.9 67 55.2
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 4.1e-11 70.9 51 70.6
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 5.4e-11 70.5 63 60.3
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 5.4e-11 70.5 59 55.9
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 7.0e-11 70.1 62 58.1
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 1.2e-10 69.3 58 67.2
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 1.6e-10 68.9 65 55.4
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 4.6e-10 67.4 60 50.0
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 6.0e-10 67.0 55 58.2
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 1.3e-09 65.9 58 62.1
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 8.6e-09 63.2 54 55.6
Zm00001eb388110 Zea mays HOM05D007790 ORTHO05D009880 5.6e-08 60.5 34 76.5
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 9.5e-08 59.7 55 50.9
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 1.6e-07 58.9 80 43.8
PGSC0003DMG401005708 Solanum tuberosum HOM05D007790 ORTHO05D009880 1.6e-07 58.9 34 70.6
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 2.1e-07 58.5 58 55.2


User provided reference genes

Program Settings